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The Protein Information Resource (PIR)

W. C. Barker
2000 Nucleic Acids Research  
The Protein Information Resource (PIR) produces the largest, most comprehensive, annotated protein sequence database in the public domain, the PIR-International Protein Sequence Database, in collaboration  ...  with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Sequence Database (JIPID).  ...  ACKNOWLEDGEMENTS PIR is a registered mark of NBRF. The work at NBRF is supported by grant number P41 LM05978 from the National Library of Medicine and by gifts from COMPAQ, Pfizer and Dupont.  ... 
doi:10.1093/nar/28.1.41 pmid:10592177 pmcid:PMC102418 fatcat:jmqdvezniratdgfskh5llytmua

The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database

D. G. George, R. J. Dodson, J. S. Garavelli, D. H. Haft, L. T. Hunt, C. R. Marzec, B. C. Orcutt, K. E. Sidman, G. Y. Srinivasarao, L.-S. L. Yeh, L. M. Arminski, R. S. Ledley (+2 others)
1997 Nucleic Acids Research  
From its origin, the PIR has aspired to support research in computational biology and genomics through the compilation of a comprehensive, quality controlled and well-organized protein sequence information  ...  Since 1988, the Protein Sequence Database has been maintained collaboratively by PIR-International, an association of macromolecular sequence data collection centers dedicated to fostering international  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine.  ... 
doi:10.1093/nar/25.1.24 pmid:9016497 pmcid:PMC146415 fatcat:3dgqdeps6vglrlamwglkltwdvq

The Protein Information Resource

C. H. Wu
2003 Nucleic Acids Research  
The Protein Information Resource (PIR) is an integrated public resource of protein informatics that supports genomic and proteomic research and scientific discovery.  ...  PIR maintains the Protein Sequence Database (PSD), an annotated protein database containing over 283 000 sequences covering the entire taxonomic range.  ...  ACKNOWLEDGEMENT The PIR is supported by grant P41 LM05978 from the National Library of Medicine, National Institutes of Health.  ... 
doi:10.1093/nar/gkg040 pmid:12520019 pmcid:PMC165487 fatcat:tkixiygtdvg7vjpo6xsbz34qte

The Protein Information Resource: an integrated public resource of functional annotation of proteins

C. H. Wu
2002 Nucleic Acids Research  
The Protein Information Resource (PIR) serves as an integrated public resource of functional annotation of protein data to support genomic/proteomic research and scientific discovery.  ...  The PIR, in collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Information Database (JIPID), produces the PIR-International Protein Sequence  ...  The PIR is supported by grant P41 LM05978 from the National Library of Medicine, National Institutes of Health.  ... 
doi:10.1093/nar/30.1.35 pmid:11752247 pmcid:PMC99125 fatcat:prcjea53zrcj3bhdd2yvoydagi

PIRSF: family classification system at the Protein Information Resource

C. H. Wu
2004 Nucleic Acids Research  
The PIRSF system provides a comprehensive resource for bioinformatics analysis and comparative studies of protein function and evolution.  ...  The PIRSF protein classification system (http://pir.georgetown.edu/pirsf/) reflects evolutionary relationships of full-length proteins and domains.  ...  Acknowledgements The project is supported by grant U01-HG02712 from the National Institutes of Health and grant DBI-0138188 from the National Science Foundation.  ... 
doi:10.1093/nar/gkh097 pmid:14681371 pmcid:PMC308831 fatcat:tr72ubcszncfdmbv4sc7lwpsym

The Universal Protein Resource (UniProt): an expanding universe of protein information

C. H. Wu
2006 Nucleic Acids Research  
The Universal Protein Resource (UniProt) provides a central resource on protein sequences and functional annotation with three database components, each addressing a key need in protein bioinformatics.  ...  The UniProt Knowledgebase (UniProtKB), comprising the manually annotated UniProtKB/Swiss-Prot section and the automatically annotated UniProtKB/ TrEMBL section, is the preeminent storehouse of protein  ...  PIR activities are also supported by the NIH grants for NIAID proteomic resource (HHSN266200400061C) and grid enablement (NCI-caBIG-ICR-10-10-01) and National Science Foundation grants for iProClass (DBI  ... 
doi:10.1093/nar/gkj161 pmid:16381842 pmcid:PMC1347523 fatcat:6xrpacost5entptndstyr7gnry

The protein identification resource (PIR)

Kathryn E. Sidman, David G. George, Winona C. Barker, Lois T. Hunt
1988 Nucleic Acids Research  
The Protein Identification Resource consists of an integrated computer system composed of a number of protein and nucleic acid sequence databases and software designed for the identification and analysis  ...  The PIR serves the scientific community through on-line access, distributing magnetic tapes, and performing off-line sequence identification services for researchers.  ...  Inquiries regarding the services of the PIR should be directed to K.E. Sidman, Protein Identification Resource, at the above address. Prices subject to change. BITNET address: PIRMAILaGUNBRF.  ... 
doi:10.1093/nar/16.5.1869 pmid:3353227 pmcid:PMC338183 fatcat:kb5jizjtwbcx7ikjkipneb35ju

The protein identification resource (PIR)

David G. George, Winona C. Barker, Lois T. Hunt
1986 Nucleic Acids Research  
The resource consists of an integrated computer system composed of a number of protein and nucleic acid sequence databases and the software necessary to analyze this information effectively.  ...  The Protein Identification Resource, which provides the scientific community with an efficient on-line computer system designed for the identification and analysis of protein sequences and their corresponding  ...  ACKNOWLEDGMENTS The Protein Identification Resource is supported by grant RR01821 from the Division of Research Resources of the National Institutes of Health.  ... 
doi:10.1093/nar/14.1.11 pmid:3945547 pmcid:PMC339349 fatcat:fjafjbupk5hlrdzcfqn5wnsnfq

The PIR-lnternational databases

Winona C. Barker, David G. George, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita
1993 Nucleic Acids Research  
PIR-International is most noted for the Protein Sequence Database.  ...  PIR-International also maintains a number of other genomic, protein sequence, and sequence-related databases. The databases of PIR-International are made widely available.  ...  ACKNOWLEDGEMENTS The Protein Identification Resource is supported by National Institutes of Health Grant LM05206 and National Science Foundation Grant DIR9107540.  ... 
doi:10.1093/nar/21.13.3089 pmid:8332528 pmcid:PMC309735 fatcat:rvg2yghe5rbnhltovj2v4oqwti

The Protein Model Portal—a comprehensive resource for protein structure and model information

Juergen Haas, Steven Roth, Konstantin Arnold, Florian Kiefer, Tobias Schmidt, Lorenza Bordoli, Torsten Schwede
2013 Database: The Journal of Biological Databases and Curation  
The Protein Model Portal-a comprehensive resource for protein structure and model information.  ...  The Protein Model Portal (PMP) has been developed to foster effective use of 3D molecular models in biomedical research by providing convenient and comprehensive access to structural information for proteins  ...  Acknowledgements We would like to thank Helen Berman, John Westbrook and the SBKB team for stimulating discussions and inspiration.  ... 
doi:10.1093/database/bat031 pmid:23624946 pmcid:PMC3889916 fatcat:acu4ceij6raabopjz4l2pxnkvi

PIR: a new resource for bioinformatics

P. B. McGarvey, H. Huang, W. C. Barker, B. C. Orcutt, J. S. Garavelli, G. Y. Srinivasarao, L.-S. L. Yeh, C. Xiao, C. H. Wu
2000 Bioinformatics  
The Protein Information Resource (PIR) has greatly expanded its Web site and developed a set of interactive search and analysis tools to facilitate the analysis, annotation, and functional identification  ...  The new PIR search systems have proved very useful in providing enriched functional annotation of protein sequences, determining protein superfamily-domain relationships, and detecting annotation errors  ...  The Protein Information Resource (PIR), along with the Munich Information Center for Protein Sequences (MIPS), and the Japanese International Protein Sequence Database (JIPID), maintains the PIR-International  ... 
doi:10.1093/bioinformatics/16.3.290 pmid:10869023 fatcat:avr5thud2vao7f3elqh6l4aeqa

The PIR-International Protein Sequence Database

W. C. Barker, J. S. Garavelli, P. B. McGarvey, C. R. Marzec, B. C. Orcutt, G. Y. Srinivasarao, L.-S. L. Yeh, R. S. Ledley, H.-W. Mewes, F. Pfeiffer, A. Tsugita, C. Wu
1999 Nucleic Acids Research  
The Protein Information Resource (PIR; http://wwwnbrf.georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining a comprehensive, non-redundant  ...  The PIR WWW server supports direct on-line sequence similarity searches, information retrieval, and knowledge discovery by providing the Protein Sequence Database and other supplementary databases.  ...  PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/27.1.39 pmid:9847137 pmcid:PMC148092 fatcat:uq7zz564e5f6vkhnb76u5t4wcy

The PIR-International Protein Sequence Database

W. C. Barker, D. G. George, H.-W. Mewes, A. Tsugita
1992 Nucleic Acids Research  
The Protein Information Resource (PIR; http://wwwnbrf.georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining a comprehensive, non-redundant  ...  The PIR WWW server supports direct on-line sequence similarity searches, information retrieval, and knowledge discovery by providing the Protein Sequence Database and other supplementary databases.  ...  PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/20.suppl.2023 pmid:1375994 pmcid:PMC333980 fatcat:pk66vyryyfb5vaugsej5ij3bna

The PIR-International Protein Sequence Database

D. George
1996 Nucleic Acids Research  
From its origin the Protein Information Resource (http://www-nbrf.georgetown.edu/pir/ ) has supported research on evolution and computational biology by designing and compiling a comprehensive, quality  ...  Since 1988 it has been maintained collaboratively by the PIR-International, an association of data collection centers engaged in international cooperation for the development of this research resource  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine. PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/24.1.17 pmid:8594572 pmcid:PMC145575 fatcat:x24ghg3fnzd55cluciiwo33hbm

The PIR-International Protein Sequence Database

W. Barker
1998 Nucleic Acids Research  
From its origin the Protein Information Resource (http://www-nbrf.georgetown.edu/pir/ ) has supported research on evolution and computational biology by designing and compiling a comprehensive, quality  ...  Since 1988 it has been maintained collaboratively by the PIR-International, an association of data collection centers engaged in international cooperation for the development of this research resource  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine. PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/26.1.27 pmid:9399794 pmcid:PMC147240 fatcat:mpbgtbyxa5bvvobxtyg2euuk6y
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