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The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database

D. G. George, R. J. Dodson, J. S. Garavelli, D. H. Haft, L. T. Hunt, C. R. Marzec, B. C. Orcutt, K. E. Sidman, G. Y. Srinivasarao, L.-S. L. Yeh, L. M. Arminski, R. S. Ledley (+2 others)
1997 Nucleic Acids Research  
Since 1988, the Protein Sequence Database has been maintained collaboratively by PIR-International, an association of macromolecular sequence data collection centers dedicated to fostering international  ...  From its origin, the PIR has aspired to support research in computational biology and genomics through the compilation of a comprehensive, quality controlled and well-organized protein sequence information  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine.  ... 
doi:10.1093/nar/25.1.24 pmid:9016497 pmcid:PMC146415 fatcat:3dgqdeps6vglrlamwglkltwdvq

The Protein Information Resource (PIR)

W. C. Barker
2000 Nucleic Acids Research  
The Protein Information Resource (PIR) produces the largest, most comprehensive, annotated protein sequence database in the public domain, the PIR-International Protein Sequence Database, in collaboration  ...  with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Sequence Database (JIPID).  ...  ACKNOWLEDGEMENTS PIR is a registered mark of NBRF. The work at NBRF is supported by grant number P41 LM05978 from the National Library of Medicine and by gifts from COMPAQ, Pfizer and Dupont.  ... 
doi:10.1093/nar/28.1.41 pmid:10592177 pmcid:PMC102418 fatcat:jmqdvezniratdgfskh5llytmua

The Protein Information Resource: an integrated public resource of functional annotation of proteins

C. H. Wu
2002 Nucleic Acids Research  
The PIR, in collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Information Database (JIPID), produces the PIR-International Protein Sequence  ...  The Protein Information Resource (PIR) serves as an integrated public resource of functional annotation of protein data to support genomic/proteomic research and scientific discovery.  ...  The iProClass and RESID databases are supported by DBI-9974855 and DBI-9808414 from the National Science Foundation.  ... 
doi:10.1093/nar/30.1.35 pmid:11752247 pmcid:PMC99125 fatcat:prcjea53zrcj3bhdd2yvoydagi

The PIR-lnternational databases

Winona C. Barker, David G. George, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita
1993 Nucleic Acids Research  
PIR-International also maintains a number of other genomic, protein sequence, and sequence-related databases. The databases of PIR-International are made widely available.  ...  PIR-International is most noted for the Protein Sequence Database.  ...  ACKNOWLEDGEMENTS The Protein Identification Resource is supported by National Institutes of Health Grant LM05206 and National Science Foundation Grant DIR9107540.  ... 
doi:10.1093/nar/21.13.3089 pmid:8332528 pmcid:PMC309735 fatcat:rvg2yghe5rbnhltovj2v4oqwti

The protein identification resource (PIR)

David G. George, Winona C. Barker, Lois T. Hunt
1986 Nucleic Acids Research  
The resource consists of an integrated computer system composed of a number of protein and nucleic acid sequence databases and the software necessary to analyze this information effectively.  ...  The Protein Identification Resource, which provides the scientific community with an efficient on-line computer system designed for the identification and analysis of protein sequences and their corresponding  ...  ACKNOWLEDGMENTS The Protein Identification Resource is supported by grant RR01821 from the Division of Research Resources of the National Institutes of Health.  ... 
doi:10.1093/nar/14.1.11 pmid:3945547 pmcid:PMC339349 fatcat:fjafjbupk5hlrdzcfqn5wnsnfq

The PIR-International Protein Sequence Database

W. C. Barker, J. S. Garavelli, P. B. McGarvey, C. R. Marzec, B. C. Orcutt, G. Y. Srinivasarao, L.-S. L. Yeh, R. S. Ledley, H.-W. Mewes, F. Pfeiffer, A. Tsugita, C. Wu
1999 Nucleic Acids Research  
The PIR WWW server supports direct on-line sequence similarity searches, information retrieval, and knowledge discovery by providing the Protein Sequence Database and other supplementary databases.  ...  The Protein Information Resource (PIR; http://wwwnbrf.georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining a comprehensive, non-redundant  ...  PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/27.1.39 pmid:9847137 pmcid:PMC148092 fatcat:uq7zz564e5f6vkhnb76u5t4wcy

The PIR-International Protein Sequence Database

W. C. Barker, D. G. George, H.-W. Mewes, A. Tsugita
1992 Nucleic Acids Research  
The PIR WWW server supports direct on-line sequence similarity searches, information retrieval, and knowledge discovery by providing the Protein Sequence Database and other supplementary databases.  ...  The Protein Information Resource (PIR; http://wwwnbrf.georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining a comprehensive, non-redundant  ...  PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/20.suppl.2023 pmid:1375994 pmcid:PMC333980 fatcat:pk66vyryyfb5vaugsej5ij3bna

PIR: a new resource for bioinformatics

P. B. McGarvey, H. Huang, W. C. Barker, B. C. Orcutt, J. S. Garavelli, G. Y. Srinivasarao, L.-S. L. Yeh, C. Xiao, C. H. Wu
2000 Bioinformatics  
The Protein Information Resource (PIR) has greatly expanded its Web site and developed a set of interactive search and analysis tools to facilitate the analysis, annotation, and functional identification  ...  The new PIR search systems have proved very useful in providing enriched functional annotation of protein sequences, determining protein superfamily-domain relationships, and detecting annotation errors  ...  The Protein Information Resource (PIR), along with the Munich Information Center for Protein Sequences (MIPS), and the Japanese International Protein Sequence Database (JIPID), maintains the PIR-International  ... 
doi:10.1093/bioinformatics/16.3.290 pmid:10869023 fatcat:avr5thud2vao7f3elqh6l4aeqa

The PIR-International Protein Sequence Database

D. George
1996 Nucleic Acids Research  
From its origin the Protein Information Resource (http://www-nbrf.georgetown.edu/pir/ ) has supported research on evolution and computational biology by designing and compiling a comprehensive, quality  ...  controlled, and well-organized protein sequence database.  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine. PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/24.1.17 pmid:8594572 pmcid:PMC145575 fatcat:x24ghg3fnzd55cluciiwo33hbm

The PIR-International Protein Sequence Database

W. Barker
1998 Nucleic Acids Research  
From its origin the Protein Information Resource (http://www-nbrf.georgetown.edu/pir/ ) has supported research on evolution and computational biology by designing and compiling a comprehensive, quality  ...  controlled, and well-organized protein sequence database.  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine. PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/26.1.27 pmid:9399794 pmcid:PMC147240 fatcat:mpbgtbyxa5bvvobxtyg2euuk6y

The PIR-International Protein Sequence Database

D G George, W C Barker, H W Mewes, F Pfeiffer, A Tsugita
1994 Nucleic Acids Research  
A major objective of PIR-International is to continue the development of the Protein Sequence Database as an essential public resource for protein sequence information.  ...  This paper briefly describes the architecture of the Protein Sequence Database and how it and associated data sets are distributed and can be accessed electronically.  ...  PIR-International has undertaken the task of completely and formally defining the information contained in the Protein Sequence Database.  ... 
pmid:7937060 pmcid:PMC308322 fatcat:gd2dtoks6jfaje7pg2uyzizruq

Database of protein sequence alignments: PIR-ALN

G. Y. Srinivasarao, L.-S. L. Yeh, C. R. Marzec, B. C. Orcutt, W. C. Barker, F. Pfeiffer
1999 Nucleic Acids Research  
The Protein Information Resource (PIR) has been maintaining a database of curated protein sequence alignments since 1991. The collection includes superfamily, family and homology domain alignments.  ...  The ATLAS information retrieval system can be used to browse and query the PIR-ALN alignments. The quarterly and weekly updates can be accessed via the WWW at http://www-nbrf.georgetown.edu/pir/  ...  The authors thank PIR staff for their contributions of alignments to the database and Katie Sidman and Desiree Goins for administrative support and help with Web page design.  ... 
doi:10.1093/nar/27.1.284 pmid:9847202 pmcid:PMC148157 fatcat:7zjhne6z6zewdldkcuu63lqynm

PIR-ALN: a database of protein sequence alignments

G. Y. Srinivasarao, L. S. Yeh, C. R. Marzec, B. C. Orcutt, W. C. Barker
1999 Bioinformatics  
Motivation: The Protein Information Resource (PIR) maintains a database of annotated and curated alignments in order to visually represent interrelationships among sequences in the PIR-International Protein  ...  The ATLAS information retrieval system can be used to browse and query the PIR-ALN alignments.  ...  The authors thank PIR staff for their contributions of alignments to the database and Kathryn Sidman for administrative support.  ... 
doi:10.1093/bioinformatics/15.5.382 pmid:10366659 fatcat:jv5js5zwfbgxbfqd6kd3szcx5i

The PIR integrated protein databases and data retrieval system

H Huang, ZZ Hu, BE Suzek, CH Wu
2004 Data Science Journal  
The Protein Information Resource (PIR) provides many databases and tools to support genomic and proteomic research.  ...  PIR is a member of UniProt--Universal Protein Resource--the central repository of protein sequence and function, which maintains UniProt Knowledgebase with extensively curated annotation, UniProt Reference  ...  The PIR web site (Protein Information Resource, 2004a) connects data mining and sequence analysis tools to underlying databases for information retrieval and knowledge discovery, with functionalities for  ... 
doi:10.2481/dsj.3.163 fatcat:dzvrwfkazfbzddrch6vcfkcwiy

PIR: PMaC's Idiom Recognizer

Catherine Olschanowsky, Allan Snavely, Mitesh R. Meswani, Laura Carrington
2010 2010 39th International Conference on Parallel Processing Workshops  
PIR, PMaC's Static Idiom Recognizer, automates the pattern recognition process. PIR recognizes specified patterns and tags the source code where they appear using static analysis.  ...  We examine the effectiveness of the tool, demonstrating 95% identification accuracy and present the results of using PIR on two HPC applications.  ...  ACKNOWLEDGMENT This work was supported by the DoD and used elements at the Extreme Scale Systems Center, located at ORNL and funded by the DoD.  ... 
doi:10.1109/icppw.2010.36 dblp:conf/icppw/OlschanowskySMC10 fatcat:552nlyfvsne4zegqbntbfj6jze
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