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The Peptide MS/MS-Fragmentome: A Set of Predictable Fragment Ions with Highly Redundant Sequence Information

Wolf D. Lehmann, Junhua Wei, Juri Rappsilber, Mojiborahman Salek, Christian G. Huber, Oliver Kohlbacher, Knut Reinert
2006
Upon low energy collision induced dissociation (CID), multiply protonated peptides generate a set of interdependent fragment ions detectable by MS/MS, the '[peptide]n+-fragmentome'.  ...  In particular dynamic fragmentation of [peptide]n+ ions in a collision cell generates information-rich MS/MS spectra.  ...  Using the phosphopeptide SA-pT-PEALAFVR as an example, a description of the redundant structural information is provided that can be extracted from the peptide MS/MS-fragmentome, which is the universe  ... 
doi:10.4230/dagsemproc.05471.15 fatcat:ehhlm7qd4vfgdcpdqzj4msrxjq

05471 Abstract Collection – Computational Proteomics

Christian G. Huber, Oliver Kohlbacher, Knut Reinert
2006
Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper.  ...  The first section describes the seminar topics and goals in general. Links to extended abstracts or full papers are provided, if available.  ...  The Peptide MS/MS-Fragmentome: A Set of Predictable Fragment Ions with Highly Redundant Sequence Information Wolf D.  ... 
doi:10.4230/dagsemproc.05471.1 fatcat:x2wobcswyrejjmztfci2pevdlq