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The Pathway Editor: A tool for managing complex biological networks

A. Sorokin, K. Paliy, A. Selkov, O. V. Demin, S. Dronov, P. Ghazal, I. Goryanin
<span title="">2006</span> <i title="IBM"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/cr766v23pncdhc7hmikak4m7pi" style="color: black;">IBM Journal of Research and Development</a> </i> &nbsp;
., as well as GlaxoSmithKline, Hugh Spence, and Frank Tobin in particular for ideas, support, useful comments and feedback during the initial stage of EPE development. ** Trademark, service mark, or registered  ...  of Bioinformatics, Apache Software Foundation, MySQL AB, Oracle Corporation, the World Wide Web Consortium, Independent Joint Photographic Experts Group, The Open Group, and BioCarta, Inc. in the United  ...  As a final visualization, Figure 8 shows a part of the complex compartmental genetic network for the interferon pathway. The very small squares represent input and output ports.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1147/rd.506.0561">doi:10.1147/rd.506.0561</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dduxd735a5aatlxqiyffofdeti">fatcat:dduxd735a5aatlxqiyffofdeti</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20061017112119/http://researchweb.watson.ibm.com/journal/rd/506/sorokin.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/70/98/7098425582f7bfd806fcc2b13fdff6c221b7902e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1147/rd.506.0561"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

The Pathway Tools software

P. D. Karp, S. Paley, P. Romero
<span title="2002-07-01">2002</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
Motivation: Bioinformatics requires reusable software tools for creating model-organism databases (MODs).  ...  ACKNOWLEDGEMENTS This work was supported by grant 1-R01-RR07861-01 from the National Center for Research Resources, by grant DE-FG03-01ER6321 from the Department of Energy, and by DARPA contract N66001  ...  The Editors provided in the Pathway Tools are a gene editor, a protein editor, a transcription-unit (operon) editor, a reaction editor, a chemical-compound editor, and a pathway editor.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/18.suppl_1.s225">doi:10.1093/bioinformatics/18.suppl_1.s225</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12169551">pmid:12169551</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/g7rbiqy3sba3xlqf5mbrmrfp4e">fatcat:g7rbiqy3sba3xlqf5mbrmrfp4e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20060902004644/http://www.cs.wmich.edu/%7Ezijiang/Pathway/pathwaytools.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/32/b5/32b5f303d01ff37cdfaa1a7754d76ae50748a93e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/18.suppl_1.s225"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

WikiPathways: Pathway Editing for the People

Alexander R Pico, Thomas Kelder, Martijn P van Iersel, Kristina Hanspers, Bruce R Conklin, Chris Evelo
<span title="2008-07-22">2008</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tsaumnzpkvdmvdi3blhl5clb24" style="color: black;">PLoS Biology</a> </i> &nbsp;
Two Models for Managing Biological DataCurrent biological databases provide the community with data submission forms or tools and access to the compiled data via websites, FTP sites, and, sometimes, programmatic  ...  We see the potential for a wiki-based pathway curation resource, coupled with an embedded graphical pathway editing tool, to meet the growing challenge presented by the influx of biological data and to  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pbio.0060184">doi:10.1371/journal.pbio.0060184</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18651794">pmid:18651794</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2475545/">pmcid:PMC2475545</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ohczavszz5b3dpsllugdbwxcfe">fatcat:ohczavszz5b3dpsllugdbwxcfe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190506023552/https://journals.plos.org/plosbiology/article/file?id=10.1371/journal.pbio.0060184&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pbio.0060184"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2475545" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

To the Editor

Jeremy I Simon, Harla K O'Donnell, Zachary Broyer
<span title="2017-08-01">2017</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wqsrbceyxrapph7nqt4ak3zr2y" style="color: black;">Pain medicine (Malden, Mass.)</a> </i> &nbsp;
Acknowledgments The authors thank colleagues in the Simulation and Visualization Group, Department of Computer Science, University of Hull for valuable discussions and technical assistance.  ...  JGE acknowledges funding from the University of Hull in support of his PhD studies. We thank the reviewers for their valuable comments. Acknowledgements This work is part-funded by DSTL.  ...  ) [23] as the model management tool.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/pm/pnx150">doi:10.1093/pm/pnx150</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29016898">pmid:29016898</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pao75lxgbvg3hkyhod262f5ebe">fatcat:pao75lxgbvg3hkyhod262f5ebe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190307002920/http://pdfs.semanticscholar.org/d7f6/6c2306d29053ef52baf4e822903ab69f3a5f.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d7/f6/d7f66c2306d29053ef52baf4e822903ab69f3a5f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/pm/pnx150"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

The BioPAX community standard for pathway data sharing

Emek Demir, Michael P Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Imre Vastrik, Guanming Wu, Peter D'Eustachio, Carl Schaefer, Joanne Luciano, Frank Schacherer, Irma Martinez-Flores (+78 others)
<span title="">2010</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/t2bqrmk7orfmxpqzqwiiyjwide" style="color: black;">Nature Biotechnology</a> </i> &nbsp;
The principal motivation for building pathway databases and software tools is to facilitate qualitative and quantitative analysis and modeling of large biological systems using a computational approach  ...  Biological Pathway Exchange (BioPAX) is a standard language to represent biological pathways at the molecular and cellular level and to facilitate the exchange of pathway data.  ...  Thanks to many people who contributed to discussions on BioPAX mailing lists, at conferences and at BioPAX workshops, especially A. Ruttenberg and J. Rees. AUTHOR CONTRIBUTIONS  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nbt.1666">doi:10.1038/nbt.1666</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20829833">pmid:20829833</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3001121/">pmcid:PMC3001121</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ca72iftu2vfdxg4w4ehbvb7lqm">fatcat:ca72iftu2vfdxg4w4ehbvb7lqm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190426223338/http://repository.bilkent.edu.tr/bitstream/handle/11693/38163/The%20BioPAX%20community%20standard%20for%20pathway%20data%20sharing.pdf;jsessionid=F1AA31B622E2148E7802EB5361986952?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/32/40/3240e44458d4e951f9fce15bf2a681c1cf092bcb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nbt.1666"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001121" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Bower JM, Bolouri H, (editors): Computational Modeling of Genetic and Biochemical Networks

Werner Dubitzky
<span title="2005-10-04">2005</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/u2ij72rn4fgcljv3o6um2aiwge" style="color: black;">BioMedical Engineering OnLine</a> </i> &nbsp;
Since the coming-of-age of the scientific discipline called bioinformatics it has become increasingly clear that computers in biology will be important not only for managing and analyzing biological and  ...  Overall, the volume provides an excellent and broad overview of computational biology and the methodologies and tools needed to model and simulate complex biological systems.  ...  Since the coming-of-age of the scientific discipline called bioinformatics it has become increasingly clear that computers in biology will be important not only for managing and analyzing biological and  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1475-925x-4-56">doi:10.1186/1475-925x-4-56</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ld6rjwnrpzenzakxr2zsy7nve4">fatcat:ld6rjwnrpzenzakxr2zsy7nve4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190428003248/https://biomedical-engineering-online.biomedcentral.com/track/pdf/10.1186/1475-925X-4-56" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/be/77/be77b3ad7341e8d3475ee843acc0ff2a4ba9dcbc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1475-925x-4-56"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

Regulatory network operations in the Pathway Tools software

Suzanne M Paley, Mario Latendresse, Peter D Karp
<span title="">2012</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
Biologists are elucidating complex collections of genetic regulatory data for multiple organisms. Software is needed for such regulatory network data.  ...  Results: The Pathway Tools software supports storage and manipulation of regulatory information through a variety of strategies.  ...  The content of this article is solely the responsibility of the authors and does not necessarily represent the official views of the National Institute of General Medical Sciences or the National Institutes  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-13-243">doi:10.1186/1471-2105-13-243</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22998532">pmid:22998532</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3473263/">pmcid:PMC3473263</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vjnwkmagn5gyvmgjkutttw7n4q">fatcat:vjnwkmagn5gyvmgjkutttw7n4q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180720010615/https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-243?site=bmcbioinformatics.biomedcentral.com" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/44/f3/44f329a68a849ae35a2d200eb75cb70b96867013.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-13-243"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3473263" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Social pathway annotation: extensions of the systems biology metabolic modelling assistant

I. Navas-Delgado, A. Real-Chicharro, M. A. Medina, F. Sanchez-Jimenez, J. F. Aldana-Montes
<span title="2010-10-21">2010</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/op7ztx4fhvairowgqifu7dnvsi" style="color: black;">Briefings in Bioinformatics</a> </i> &nbsp;
In this article, we focus on a tool with social networking capabilities built on top of the SBMM (Systems Biology Metabolic Modelling) Assistant to enable the collaborative improvement of metabolic pathway  ...  The integration of data in the life sciences is a key component in the analysis of biological processes.  ...  We would also like to mention the undergraduate students enrolled in a Metabolic Biochemistry Group and the graduate students enrolled in a master course on 'Analysis and Modelling of Complex Biological  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/bbq061">doi:10.1093/bib/bbq061</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20965999">pmid:20965999</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3ls3d7nvj5edbaqrjaw3tc3pqa">fatcat:3ls3d7nvj5edbaqrjaw3tc3pqa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180728004037/https://watermark.silverchair.com/bbq061.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAZwwggGYBgkqhkiG9w0BBwagggGJMIIBhQIBADCCAX4GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM2d9ysHOTMTc4W8yFAgEQgIIBT5wT3YXUgg4aqbJ6TVL2CCK_7tuYiClcYcHi5TLZdtPlhiOKIaah6WXrzQdrBT1zWxY_4gtJz-ZT8vE5JbkZLtkvzmNsWq48H8VyMIXbYbhWLhh47JLAnQ1rsjlF4kulsxUKsOJN7PCwSK-Z2m5GDYiryXULyGdZ5-H9c227jLG0TKKy32orBj9Ll9YkAoLWuHzPLOpYKJ7oILZwOxlPtoMldnlFfn2W1oMiHrqGP6w8-AiYuNFsCNeZMEqPf1HOamnjtdCHzPrjzNueuQBvjfmtgSe-aa7vbTUttZxoaDF7TL8f4xibAv87gcJ4tmvrr-WXMS5tuPoqJqoQbqOVxR8JucMD28CLvjmQz54iG9biryW6HsGZ7kIUh8r9xbSmzZ2q8bo1NQ4bUUhbgHCyAXwyYd65BrncabWckxY36KoMD-TLOzWed0WFE92nfjyr" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1d/ac/1dacb897f1618b038c45b1f82e04c9542aa2c924.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/bbq061"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Graph Models for Biological Pathway Visualization: State of the Art and Future Challenges [article]

Hsiang-Yun Wu and Martin Nöllenburg and Ivan Viola
<span title="2021-10-10">2021</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
The contribution will, therefore, lie in providing guidelines and challenges of using multilayer networks as a unified data structure for the biological pathway visualization.  ...  Biological pathways are an example of complex real-world networks, where vertices represent biological entities, and edges indicate the underlying connectivity.  ...  Scientists need to either use pathway editors, such as CellDesigner [9] , SBGN-ED [22] , or Newt [34] to create the pathway diagrams, or adopt conventional network analysis tools, such as Gephi [1  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2110.04808v1">arXiv:2110.04808v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/usdekhyy7zcezdxggpl35oy5wu">fatcat:usdekhyy7zcezdxggpl35oy5wu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20211015221120/https://arxiv.org/pdf/2110.04808v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/25/02/2502cb9453a3647be4adc0998400b421fe536fb3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2110.04808v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Editors & Editorial Board

Simon Lin
<span title="">2010</span> <i title="OMICS Publishing Group"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/cfj7yw2qavhc5f35je6wes764m" style="color: black;">Journal of computer science and systems biology</a> </i> &nbsp;
Written Action Plans (WAPs) may be a useful tool for the practicing allergist to enhance patient understanding of the management plan ( Figure 2 ).  ...  Written Action Plans, such as this Asthma Action Plan, may be a useful tool for the practicing allergist to enhance patient understanding of the management plan.  ...  a comprehensive global strategy for the management of allergic diseases customers to consult a physician for their allergic risk.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4172/jcsb.10000e4">doi:10.4172/jcsb.10000e4</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7r5mmnm6cbhbllp4uxdy3f6lyy">fatcat:7r5mmnm6cbhbllp4uxdy3f6lyy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160128111239/http://www.eaaci.org/globalatlas/GlobalAtlasAllergy.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4172/jcsb.10000e4"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Editors & Editorial Board

Simon Lin
<span title="">2010</span> <i title="OMICS Publishing Group"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/cfj7yw2qavhc5f35je6wes764m" style="color: black;">Journal of computer science and systems biology</a> </i> &nbsp;
Written Action Plans (WAPs) may be a useful tool for the practicing allergist to enhance patient understanding of the management plan ( Figure 2 ).  ...  Written Action Plans, such as this Asthma Action Plan, may be a useful tool for the practicing allergist to enhance patient understanding of the management plan.  ...  a comprehensive global strategy for the management of allergic diseases customers to consult a physician for their allergic risk.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4172/jcsb.10000e5">doi:10.4172/jcsb.10000e5</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/uzzoahvykfdhrbhho3pprtk34a">fatcat:uzzoahvykfdhrbhho3pprtk34a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160128111239/http://www.eaaci.org/globalatlas/GlobalAtlasAllergy.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4172/jcsb.10000e5"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

Emek Demir, Michael P Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Imre Vastrik, Guanming Wu, Peter D'Eustachio, Carl Schaefer, Joanne Luciano, Frank Schacherer, Irma Martinez-Flores (+78 others)
<span title="">2010</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/t2bqrmk7orfmxpqzqwiiyjwide" style="color: black;">Nature Biotechnology</a> </i> &nbsp;
.; Pandey, A.; Thomas, P.; Wingender, E.; Karp, P. D.; Sander, C.; and Bader, G. D., "The BioPAX Community Standard for Pathway Data Sharing" (2010). Biology Faculty Works. 22.  ...  .; Lopez-Fuentes, A.  ...  See Supplementary Table 5 for a full list of author contributions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nbt1210-1308c">doi:10.1038/nbt1210-1308c</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2jwkkkz2gvdctmvgnej3gagrdu">fatcat:2jwkkkz2gvdctmvgnej3gagrdu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170921233004/http://digitalcommons.lmu.edu/cgi/viewcontent.cgi?article=1021&amp;context=bio_fac" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/78/7d/787d027ff2f5633a3e9fba986b1ed4fc90060c0b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nbt1210-1308c"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

Adaptation and learning over complex networks [From the Guest Editors]

Ali H. Sayed, Sergio Barbarossa, Sergios Theodoridis, Isao Yamada
<span title="">2013</span> <i title="Institute of Electrical and Electronics Engineers (IEEE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/txj4mzfpbne4hhwgo2ku5cycbq" style="color: black;">IEEE Signal Processing Magazine</a> </i> &nbsp;
For example, these networks can help model and study how individuals are linked over social networks; they can describe the range of activities in macroeconomies, or even model pathways defined over complex  ...  Although biological networks provide inspiration for the design of powerful engineered networks, the resulting theory and algorithms are applicable to a broader context including machine learning applications  ...  Processing Magazine cover a wide range of topics that are relevant to the study of complex networks such as: 1) "Models for the Diffusion of Beliefs in Social Networks" by Chamley et al.  ... 
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Letter to the Editor

<span title="">1990</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xazd7sz56bhlblccecvt53itke" style="color: black;">Japanese Journal of Cancer Research</a> </i> &nbsp;
We do not have the tools to analyze multi-variable systems of the complexity expected from growth regulation, but we can look around to see whether such tools are becoming available somewhere else.  ...  genetic and biological levels.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1111/j.1349-7006.1990.tb03348.x">doi:10.1111/j.1349-7006.1990.tb03348.x</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/h7ylexmwfzbjvg3pny427pzboa">fatcat:h7ylexmwfzbjvg3pny427pzboa</a> </span>
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WikiPathways: capturing the full diversity of pathway knowledge

Martina Kutmon, Anders Riutta, Nuno Nunes, Kristina Hanspers, Egon L. Willighagen, Anwesha Bohler, Jonathan Mélius, Andra Waagmeester, Sravanthi R. Sinha, Ryan Miller, Susan L. Coort, Elisa Cirillo (+3 others)
<span title="2015-10-19">2015</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
WikiPathways (http://www.wikipathways.org) is an open, collaborative platform for capturing and disseminating models of biological pathways for data visualization and analysis.  ...  We introduce the Quick Edit feature for pathway authors and curators, in addition to new means of publishing pathways and maintaining custom pathway collections to serve specific research topics and communities  ...  ACKNOWLEDGEMENTS Thanks to all the people who contributed to WikiPathways content, code and discussions. We are grateful for the support of the Google Summer of Code program.  ... 
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