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The PSSH database of alignments between protein sequences and tertiary structures

A. Schafferhans
2003 Nucleic Acids Research  
We introduce the PSSH ('Protein Sequence-to-Structure Homologies') database derived from HSSP2, an improved version of the HSSP ('Homology-derived Secondary Structure of Proteins') database [Dodge et al  ...  Currently (September 2002), PSSH provides structural information for over 400 000 protein sequences, covering 48% of SWALL and 61% of SWISS-PROT sequences; HSSPchain provides sequence information for over  ...  This work was partly funded by a grant from the German Federal Ministry for Science and Education ('Protein Structure Factory' grant 01 GG 9817).  ... 
doi:10.1093/nar/gkg110 pmid:12520061 pmcid:PMC165557 fatcat:4tb6jl65m5duvh3wfyykefhwwi

Databases and QSAR for cancer research

Adeel Malik, Hemajit Singh, Munazah Andrabi, Syed Akhtar Husain, Shandar Ahmad
2007 Cancer Informatics  
In this review, we take a survey of bioinformatics databases and quantitative structure-activity relationship studies reported in published literature.  ...  Databases from the most general to special cancer-related ones have been included.  ...  .bse.kyutech.ac.jp/jouhou/ therm/protherm.html Thermodynamic data for Pro-wild-type and mutant proteins PSSH http://srs3d.ebi.ac.uk/ Alignments between protein sequences and tertiary structures  ... 
pmid:19458762 pmcid:PMC2675501 fatcat:dwxracpa4fcbjh2h6odrsmec6e