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The PIR-International Protein Sequence Database

W. Barker
1998 Nucleic Acids Research  
controlled, and well-organized protein sequence database.  ...  Since 1988 it has been maintained collaboratively by the PIR-International, an association of data collection centers engaged in international cooperation for the development of this research resource  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine. PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/26.1.27 pmid:9399794 pmcid:PMC147240 fatcat:mpbgtbyxa5bvvobxtyg2euuk6y

The PIR-International Protein Sequence Database

D. George
1996 Nucleic Acids Research  
controlled, and well-organized protein sequence database.  ...  Since 1988 it has been maintained collaboratively by the PIR-International, an association of data collection centers engaged in international cooperation for the development of this research resource  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine. PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/24.1.17 pmid:8594572 pmcid:PMC145575 fatcat:x24ghg3fnzd55cluciiwo33hbm

The PIR-International Protein Sequence Database

W. C. Barker, J. S. Garavelli, P. B. McGarvey, C. R. Marzec, B. C. Orcutt, G. Y. Srinivasarao, L.-S. L. Yeh, R. S. Ledley, H.-W. Mewes, F. Pfeiffer, A. Tsugita, C. Wu
1999 Nucleic Acids Research  
The weekly release of the Protein Sequence Database can be accessed through the PIR Web site.  ...  The PIR WWW server supports direct on-line sequence similarity searches, information retrieval, and knowledge discovery by providing the Protein Sequence Database and other supplementary databases.  ...  PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/27.1.39 pmid:9847137 pmcid:PMC148092 fatcat:uq7zz564e5f6vkhnb76u5t4wcy

The PIR-International Protein Sequence Database

D G George, W C Barker, H W Mewes, F Pfeiffer, A Tsugita
1994 Nucleic Acids Research  
A major objective of PIR-International is to continue the development of the Protein Sequence Database as an essential public resource for protein sequence information.  ...  PIR-International is an association of macromolecular sequence data collection centers dedicated to fostering international cooperation as an essential element in the development of scientific databases  ...  Thus the PIR-International Protein Sequence Database is both the largest and the fastest growing of the curated protein sequence databases.  ... 
pmid:7937060 pmcid:PMC308322 fatcat:gd2dtoks6jfaje7pg2uyzizruq

The PIR-International Protein Sequence Database

W. C. Barker, D. G. George, H.-W. Mewes, A. Tsugita
1992 Nucleic Acids Research  
The weekly release of the Protein Sequence Database can be accessed through the PIR Web site.  ...  The PIR WWW server supports direct on-line sequence similarity searches, information retrieval, and knowledge discovery by providing the Protein Sequence Database and other supplementary databases.  ...  PIR is a registered mark of the NBRF.  ... 
doi:10.1093/nar/20.suppl.2023 pmid:1375994 pmcid:PMC333980 fatcat:pk66vyryyfb5vaugsej5ij3bna

The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database

D. G. George, R. J. Dodson, J. S. Garavelli, D. H. Haft, L. T. Hunt, C. R. Marzec, B. C. Orcutt, K. E. Sidman, G. Y. Srinivasarao, L.-S. L. Yeh, L. M. Arminski, R. S. Ledley (+2 others)
1997 Nucleic Acids Research  
Since 1988, the Protein Sequence Database has been maintained collaboratively by PIR-International, an association of macromolecular sequence data collection centers dedicated to fostering international  ...  From its origin, the PIR has aspired to support research in computational biology and genomics through the compilation of a comprehensive, quality controlled and well-organized protein sequence information  ...  Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Library of Medicine.  ... 
doi:10.1093/nar/25.1.24 pmid:9016497 pmcid:PMC146415 fatcat:3dgqdeps6vglrlamwglkltwdvq

The Protein Information Resource (PIR)

W. C. Barker
2000 Nucleic Acids Research  
The Protein Information Resource (PIR) produces the largest, most comprehensive, annotated protein sequence database in the public domain, the PIR-International Protein Sequence Database, in collaboration  ...  The PIR-International Protein Sequence Database and other files are also available by FTP.  ...  ACKNOWLEDGEMENTS PIR is a registered mark of NBRF. The work at NBRF is supported by grant number P41 LM05978 from the National Library of Medicine and by gifts from COMPAQ, Pfizer and Dupont.  ... 
doi:10.1093/nar/28.1.41 pmid:10592177 pmcid:PMC102418 fatcat:jmqdvezniratdgfskh5llytmua

The Protein Information Resource: an integrated public resource of functional annotation of proteins

C. H. Wu
2002 Nucleic Acids Research  
The PIR, in collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Information Database (JIPID), produces the PIR-International Protein Sequence  ...  Database (PSD), the major annotated protein sequence database in the public domain, containing about 250 000 proteins.  ...  The iProClass and RESID databases are supported by DBI-9974855 and DBI-9808414 from the National Science Foundation.  ... 
doi:10.1093/nar/30.1.35 pmid:11752247 pmcid:PMC99125 fatcat:prcjea53zrcj3bhdd2yvoydagi

PIR-ALN: a database of protein sequence alignments

G. Y. Srinivasarao, L. S. Yeh, C. R. Marzec, B. C. Orcutt, W. C. Barker
1999 Bioinformatics  
Motivation: The Protein Information Resource (PIR) maintains a database of annotated and curated alignments in order to visually represent interrelationships among sequences in the PIR-International Protein  ...  Sequence Database, to spread and standardize protein names, features and keywords among members of a family or superfamily, and to aid us in classifying sequences, in identifying conserved regions, and  ...  The authors thank PIR staff for their contributions of alignments to the database and Kathryn Sidman for administrative support.  ... 
doi:10.1093/bioinformatics/15.5.382 pmid:10366659 fatcat:jv5js5zwfbgxbfqd6kd3szcx5i

Database of protein sequence alignments: PIR-ALN

G. Y. Srinivasarao, L.-S. L. Yeh, C. R. Marzec, B. C. Orcutt, W. C. Barker, F. Pfeiffer
1999 Nucleic Acids Research  
The Protein Information Resource (PIR) has been maintaining a database of curated protein sequence alignments since 1991. The collection includes superfamily, family and homology domain alignments.  ...  The database has helped in classifying sequences, in defining new homology domains, and in spreading and standardizing protein names, features and keywords among members of a family or superfamily.  ...  The authors thank PIR staff for their contributions of alignments to the database and Katie Sidman and Desiree Goins for administrative support and help with Web page design.  ... 
doi:10.1093/nar/27.1.284 pmid:9847202 pmcid:PMC148157 fatcat:7zjhne6z6zewdldkcuu63lqynm

The RESID Database of protein structure modifications

J. S. Garavelli
1999 Nucleic Acids Research  
Because the number of post-translational modifications requiring standardized annotation in the PIR-International Protein Sequence Database was large and steadily increasing, a database of protein structure  ...  In 1995 RESID was publicly released as a PIR-International text database distributed on CD-ROM and accessible through the ATLAS program.  ...  ACKNOWLEDGEMENTS Enhancement of the RESID Database is supported by NSF grant DBI-9808414. The RESID Database is copyrighted by the National Biomedical Research Foundation.  ... 
doi:10.1093/nar/27.1.198 pmid:9847179 pmcid:PMC148134 fatcat:miynu6p5afdfrmmycnmhvcql6i

Protein Information Resource: a community resource for expert annotation of protein data

W. C. Barker
2001 Nucleic Acids Research  
PIR, along with the Munich Information Center for Protein Sequences and the Japan International Protein Information Database, maintains the PIR-International Protein Sequence Database, the most comprehensive  ...  , well-annotated, and non-redundant protein sequence database in the public domain.  ...  PIR, along with the Munich Information Center for Protein Sequences and the Japan International Protein Information Database, maintains the PIR-International Protein Sequence Database, the most comprehensive  ... 
doi:10.1093/nar/29.1.29 pmid:11125041 pmcid:PMC29802 fatcat:ipmquez4fbdlfghsacscn4h7zi

The PIR-lnternational databases

Winona C. Barker, David G. George, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita
1993 Nucleic Acids Research  
PIR-International is most noted for the Protein Sequence Database.  ...  PIR-International also maintains a number of other genomic, protein sequence, and sequence-related databases. The databases of PIR-International are made widely available.  ...  ACKNOWLEDGEMENTS The Protein Identification Resource is supported by National Institutes of Health Grant LM05206 and National Science Foundation Grant DIR9107540.  ... 
doi:10.1093/nar/21.13.3089 pmid:8332528 pmcid:PMC309735 fatcat:rvg2yghe5rbnhltovj2v4oqwti

PIR: a new resource for bioinformatics

P. B. McGarvey, H. Huang, W. C. Barker, B. C. Orcutt, J. S. Garavelli, G. Y. Srinivasarao, L.-S. L. Yeh, C. Xiao, C. H. Wu
2000 Bioinformatics  
The new PIR search systems have proved very useful in providing enriched functional annotation of protein sequences, determining protein superfamily-domain relationships, and detecting annotation errors  ...  The Protein Information Resource (PIR) has greatly expanded its Web site and developed a set of interactive search and analysis tools to facilitate the analysis, annotation, and functional identification  ...  The Protein Information Resource (PIR), along with the Munich Information Center for Protein Sequences (MIPS), and the Japanese International Protein Sequence Database (JIPID), maintains the PIR-International  ... 
doi:10.1093/bioinformatics/16.3.290 pmid:10869023 fatcat:avr5thud2vao7f3elqh6l4aeqa

MIPS: a database for protein sequences, homology data and yeast genome information

H. W. Mewes, K. Albermann, K. Heumann, S. Liebl, F. Pfeiffer
1997 Nucleic Acids Research  
the framework of the tripartite association of the PIR-International Protein Sequence Database (1,2).  ...  MIPS contributes nearly 50% of the data input to the PIR-International Protein Sequence Database.  ...  ACKNOWLEDMENTS MIPS is supported by the Max-Planck-Gesellschaft, the Forschungszentrum f. Umwelt und Gesundheit (GSF) and the European Commission BRIDGE Grants BIOT-CT-0167 and 0172.  ... 
doi:10.1093/nar/25.1.28 pmid:9016498 pmcid:PMC146421 fatcat:3vh6ocnq4fc2hdorrauw4g6gse
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