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The Mouse Genome Database (MGD): integrating biology with the genome

C. J. Bult
2004 Nucleic Acids Research  
The Mouse Genome Database (MGD) is one component of the Mouse Genome Informatics (MGI) system (http://www.informatics.jax.org), a community database resource for the laboratory mouse.  ...  MGD strives to provide a comprehensive knowledgebase about the mouse with experiments and data annotated from both literature and online sources.  ...  ACKNOWLEDGEMENTS MGD is supported by NIH/NHGRI grant HG00330.  ... 
doi:10.1093/nar/gkh125 pmid:14681461 pmcid:PMC308859 fatcat:uprwazyvfndahp6bojvp5rxqo4

MGD: the Mouse Genome Database

J. A. Blake
2003 Nucleic Acids Research  
The Mouse Genome Database (MGD) (http://www. informatics.jax.org) one component of a community database resource for the laboratory mouse, a key model organism for interpreting the human genome and for  ...  MGD collaborates with other bioinformatics groups to curate a definitive set of information about the laboratory mouse.  ...  ACKNOWLEDGEMENTS MGD is supported by NIH/NHGRI grant HG00330. GO development and annotation efforts for MGI are supported by NIH/NHGRI grant HG02273.  ... 
doi:10.1093/nar/gkg047 pmid:12519980 pmcid:PMC165494 fatcat:m2a3h2f4ubah7hmqaqbuklqpbi

The Mouse Genome Database (MGD): updates and enhancements

J. A. Blake
2006 Nucleic Acids Research  
The Mouse Genome Database (MGD) integrates genetic and genomic data for the mouse in order to facilitate the use of the mouse as a model system for understanding human biology and disease processes.  ...  A core component of the MGD effort is the acquisition and integration of genomic, genetic, functional and phenotypic information about mouse genes and gene products.  ...  ACKNOWLEDGEMENTS The Mouse Genome Database is supported by NIH/ NHGRI grant HG00330. Funding to pay the Open Access publication charges for this article was provided by NHGRI P41-00330.  ... 
doi:10.1093/nar/gkj085 pmid:16381933 pmcid:PMC1347448 fatcat:xls3y2e44nevzpfc3bul6tyohy

The Mouse Genome Database (MGD): mouse biology and model systems

C. J. Bult, J. T. Eppig, J. A. Kadin, J. E. Richardson, J. A. Blake
2007 Nucleic Acids Research  
The Mouse Genome Database, (MGD, http:// www.informatics.jax.org/), integrates genetic, genomic and phenotypic information about the laboratory mouse, a primary animal model for studying human biology  ...  Recent improvements in MGD described here include the association of gene trap data with mouse genes and a new batch query capability for customized data access and retrieval.  ...  ACKNOWLEDGEMENTS The Mouse Genome Database is supported by NIH/ NHGRI grant HG000330. Funding to pay the Open Access publication charges for this article was provided by HG000330.  ... 
doi:10.1093/nar/gkm961 pmid:18158299 pmcid:PMC2238849 fatcat:pmebitz5ura4pmusobr7cfxbuy

Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database

Yunxia Zhu, Benjamin L King, Babak Parvizi, Brian P Brunk, Christian J Stoeckert, John Quackenbush, Joel Richardson, Carol J Bult
2003 Genome Biology  
The utility of such databases is enhanced when the sequences they contain are integrated with such biological information as genomic location, gene function, gene expression and phenotypic variation.  ...  We present the analysis and results of a semi-automated process of connecting transcript assemblies with highly curated biological information for mouse genes that is available through the Mouse Genome  ...  The comments of Martin Ringwald, Molly Bogue, and Dong (Donnie) Qi helped to improve the clarity of the manuscript.  ... 
doi:10.1186/gb-2003-4-2-r16 fatcat:k43kned745czjfmzgb54vnc22y

Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database

Yunxia Zhu, Benjamin L King, Babak Parvizi, Brian P Brunk, Christian J Stoeckert, John Quackenbush, Joel Richardson, Carol J Bult
2003 Genome Biology  
The utility of such databases is enhanced when the sequences they contain are integrated with such biological information as genomic location, gene function, gene expression and phenotypic variation.  ...  We present the analysis and results of a semi-automated process of connecting transcript assemblies with highly curated biological information for mouse genes that is available through the Mouse Genome  ...  The comments of Martin Ringwald, Molly Bogue, and Dong (Donnie) Qi helped to improve the clarity of the manuscript.  ... 
pmid:12620126 pmcid:PMC151306 fatcat:etkzkochhzg4hi6b32vdvyptpy

Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse

Cynthia L Smith, Judith A Blake, James A Kadin, Joel E Richardson, Carol J Bult
2017 Nucleic Acids Research  
The Mouse Genome Database (MGD; http://www. informatics.jax.org) is the key community mouse database which supports basic, translational and computational research by providing integrated data on the genetics  ...  , genomics, and biology of the laboratory mouse.  ...  ACKNOWLEDGEMENTS We are grateful to our collaborators at Disease Ontology (DO) and Rat Genome Database (RGD) for providing updated disease ontology files and help with revisions and additions to the ontology  ... 
doi:10.1093/nar/gkx1006 pmid:29092072 pmcid:PMC5753350 fatcat:vvlq4zpe4jac7ik25sh26qrulq

The Mouse Genome Database (MGD): the model organism database for the laboratory mouse

J. A. Blake
2002 Nucleic Acids Research  
The Mouse Genome Database (MGD) is the community database resource for the laboratory mouse, a key model organism for interpreting the human genome and for understanding human biology and disease (http  ...  MGD strives to provide a highly curated, highly integrated information resource that not only includes the consensus view of current knowledge about the mouse, but also provides comparative genomic information  ...  ACKNOWLEDGEMENTS MGD is supported by NIH/NHGRI grant HG00330. GO development and annotation efforts for MGI are supported by NIH/NHGRI grant HG02273.  ... 
doi:10.1093/nar/30.1.113 pmid:11752269 pmcid:PMC99116 fatcat:bhiq5oc2lvct7pfw32picmq2xq

The Mouse Genome Database (MGD): integration nexus for the laboratory mouse

J. A. Blake
2001 Nucleic Acids Research  
The Mouse Genome Database (MGD) is the community database resource for the laboratory mouse, a key model organism for interpreting the human genome and for understanding human biology and disease (http  ...  This link between the genome and the biology of the mouse is especially important as phenotype information grows from large mutagenesis projects and genotype information grows from large-scale sequencing  ...  ACKNOWLEDGEMENTS The Mouse Genome Database is supported by NIH grant HG00330. The MouseBLAST is supported by NIH:HG01559 and DOE:DE-FG02-99ER62850.  ... 
doi:10.1093/nar/29.1.91 pmid:11125058 pmcid:PMC29788 fatcat:tehxcnxurzaltlsmbtsbgkdfzq

The Mouse Genome Database (MGD): genetic and genomic information about the laboratory mouse

J. A. Blake, J. E. Richardson, M. T. Davisson, J. T. Eppig
1999 Nucleic Acids Research  
The Mouse Genome Database (MGD) focuses on the integration of mapping, homology, polymorphism and molecular data about the laboratory mouse.  ...  MGD is accessible at http://www.informatics.jax.org + The Mouse Genome Database Group:  ...  The MGI web site provides integrated access to various information resources on the genetics and biology of the laboratory mouse, including the MGD, GXD (4), the Mouse Tumor Database (MTB) (5) and the  ... 
doi:10.1093/nar/27.1.95 pmid:9847150 pmcid:PMC148105 fatcat:cdtowpch3rfpvlfa2qkirwhftm

The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse

J. A. Blake
2000 Nucleic Acids Research  
The Mouse Genome Database (MGD) is a comprehensive public database of mouse genomic, genetic and phenotypic information (http://www.informatics.jax.org ).  ...  MGD scientists and annotators work cooperatively with the research community to provide an integrated, consensus view of the mouse genome while also providing experimental data including data conflicting  ...  Other projects include the Gene Expression Database (GXD) (2) and the Mouse Tumor Biology (MTB) (3) database.  ... 
doi:10.1093/nar/28.1.108 pmid:10592195 pmcid:PMC102449 fatcat:ktxj23y7izcjxprc5733y4lvve

Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse

Judith A. Blake, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Cynthia L. Smith, Carol J. Bult
2016 Nucleic Acids Research  
The Mouse Genome Database (MGD: http://www. informatics.jax.org) is the primary community data resource for the laboratory mouse.  ...  It provides a highly integrated and highly curated system offering a comprehensive view of current knowledge about mouse genes, genetic markers and genomic features as well as the associations of those  ...  ACKNOWLEDGEMENTS The authors thank David Shaw for his contributions and leadership in providing User Support services to the community of scientists who use MGD and all MGI data resources.  ... 
doi:10.1093/nar/gkw1040 pmid:27899570 pmcid:PMC5210536 fatcat:t7apqsxrl5h7zbjn4bo47zejhu

The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology

J. T. Eppig
2004 Nucleic Acids Research  
The Mouse Genome Database (MGD) forms the core of the Mouse Genome Informatics (MGI) system (http://www.informatics.jax.org), a model organism database resource for the laboratory mouse.  ...  MGD provides essential integration of experimental knowledge for the mouse system with information annotated from both literature and online sources.  ...  ACKNOWLEDGEMENTS The Mouse Genome Database is supported by NIH/NHGRI grant HG00330.  ... 
doi:10.1093/nar/gki113 pmid:15608240 pmcid:PMC540067 fatcat:b3zp33jchrbjhec3owbmkswslm

The mouse genome database (MGD): new features facilitating a model system

J. T. Eppig, J. A. Blake, C. J. Bult, J. A. Kadin, J. E. Richardson
2007 Nucleic Acids Research  
The mouse genome database (MGD, http://www. informatics.jax.org/), the international community database for mouse, provides access to extensive integrated data on the genetics, genomics and biology of  ...  MGD collaborates with the bioinformatics community on the development of data and semantic standards, and it incorporates key ontologies into the MGD annotation system, including the Gene Ontology (GO)  ...  ACKNOWLEDGEMENTS The Mouse Genome Database is supported by NIH/ NHGRI grant HG000330. Funding to pay the Open Access publication charges for this article was provided by The Mouse Genome Database.  ... 
doi:10.1093/nar/gkl940 pmid:17135206 pmcid:PMC1751527 fatcat:7k2or5spprcaxgacqxy6ju3bam

The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse

J. T. Eppig, J. A. Blake, C. J. Bult, J. A. Kadin, J. E. Richardson
2011 Nucleic Acids Research  
A summary of the current contents of MGD is given in Table 1 . Integrated with MGD are other components of the Mouse Genome Informatics (MGI) database resource (http://www.informatics.jax.org).  ...  These include the Gene Expression Database (7) , the Mouse Tumor Biology Database (8) and the MouseCyc database of metabolic pathways (9) .  ... 
doi:10.1093/nar/gkr974 pmid:22075990 pmcid:PMC3245042 fatcat:266dcvh3yrhspdtm6q2jd3es3a
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