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The Mouse Gene Expression Database (GXD)

M. Ringwald
2001 Nucleic Acids Research  
The Gene Expression Database (GXD) is a community resource of gene expression information for the laboratory mouse.  ...  GXD is integrated with the Mouse Genome Database (MGD).  ...  We also would like to thank the journal Development for making electronic image files available to us on a regular basis. The Gene Expression Database is supported by NIH grant HD33745.  ... 
doi:10.1093/nar/29.1.98 pmid:11125060 pmcid:PMC29814 fatcat:hmixkiky7fbnnbhd5kyahr7jpu

The mouse Gene Expression Database (GXD): 2007 update

C. M. Smith, J. H. Finger, T. F. Hayamizu, I. J. McCright, J. T. Eppig, J. A. Kadin, J. E. Richardson, M. Ringwald
2007 Nucleic Acids Research  
The Gene Expression Database (GXD) is a community resource of mouse developmental expression information.  ...  GXD integrates different types of expression data at the transcript and protein level and captures expression information from many different mouse strains and mutants.  ...  ACKNOWLEDGEMENTS We would like to thank our colleagues from the other MGI projects for their contributions to the GXD project and to the larger integrated MGI resource.  ... 
doi:10.1093/nar/gkl1003 pmid:17130151 pmcid:PMC1716716 fatcat:uricgpyc6bcpvjvm7wr7tfcl6m

The mouse Gene Expression Database (GXD): 2014 update

Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Joanne Berghout, Jeff Campbell, Lori E. Corbani, Kim L. Forthofer, Pete J. Frost, Dave Miers, David R. Shaw (+5 others)
2013 Nucleic Acids Research  
The Gene Expression Database (GXD; http://www. informatics.jax.org/expression.shtml) is an extensive and well-curated community resource of mouse developmental expression information.  ...  Integration with the other data in Mouse Genome Informatics (MGI) and interconnections with other databases places GXD's gene expression information in the larger biological and biomedical context.  ...  ACKNOWLEDGEMENTS We would like to thank our colleagues from the other MGI projects for their contributions to the GXD project and to the larger MGI resource.  ... 
doi:10.1093/nar/gkt954 pmid:24163257 pmcid:PMC3965015 fatcat:eogjmum57rcurgukgaz4hdqaq4

The mouse Gene Expression Database (GXD): 2017 update

Jacqueline H. Finger, Constance M. Smith, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Meiyee Law, David R. Shaw, Richard M. Baldarelli, Jon S. Beal, Olin Blodgett, Jeff W. Campbell, Lori E. Corbani (+12 others)
2016 Nucleic Acids Research  
The mouse Gene Expression Database (GXD) is an extensive, well-curated community resource freely available at www.informatics.jax. org/expression.shtml.  ...  GXD's gene expression information is integrated with the other data in Mouse Genome Informatics and interconnected with other databases, placing these data in the larger biological and biomedical context  ...  Enabling the anatomical comparison of expression and phenotype data GXD uses the Mouse Developmental Anatomy (EMAPA) Ontology to describe gene expression patterns (9, 10) .  ... 
doi:10.1093/nar/gkw1073 pmid:27899677 pmcid:PMC5210556 fatcat:ap7xedirirbnjdzo5qrckxvf2y

GXD: a Gene Expression Database for the laboratory mouse

M. Ringwald, M. E. Mangan, J. T. Eppig, J. A. Kadin, J. E. Richardson
1999 Nucleic Acids Research  
The Gene Expression Database (GXD) is a community resource that stores and integrates expression information for the laboratory mouse, with a particular emphasis on mouse development, and makes these data  ...  GXD is implemented as a relational database and integrated with the Mouse Genome Database (MGD) to enable global analysis of genotype, expression and phenotype information.  ...  The Gene Expression Database is supported by NIH grants HD33745 and HD08435.  ... 
doi:10.1093/nar/27.1.106 pmid:9847152 pmcid:PMC148107 fatcat:q33vgq3e7vdo5igprmyemlkpam

The mouse Gene Expression Database (GXD): updates and enhancements

D. P. Hill
2004 Nucleic Acids Research  
The Gene Expression Database (GXD) is a community resource for gene expression information in the laboratory mouse.  ...  Integration with other Mouse Genome Informatics (MGI) databases places the gene expression information in the context of mouse genetic, genomic and phenotypic information.  ...  GXD is supported by NIH grant HD33745. The GO project is supported by NIH grant HG02273.  ... 
doi:10.1093/nar/gkh069 pmid:14681482 pmcid:PMC308803 fatcat:phgvq2wd5valpiel3ogajfx3ee

The Gene Expression Database (GXD) for mouse developmental data

J. Finger, T. Hayamizu, I. McCright, C. Smith, J.T. Eppig, J. Kadin, L. Richardson, M. Ringwald
2006 Developmental Biology  
The Gene Expression Database (GXD) is a public resource of mouse expression data with a primary focus on development.  ...  GXD uses many standardized vocabularies and is fully integrated with the genetic and phenotypic data in the Mouse Genome Database, so expression data can be analyzed in a larger biological context.  ... 
doi:10.1016/j.ydbio.2006.04.169 fatcat:sexwxf5x2vcudkqoynayrevfy4

The Gene Expression Database (GXD): A mouse developmental data resource

Jacqueline H. Finger, T.F. Hayamizu, I.J. McCright, C.M. Smith, J.T. Eppig, J.A. Kadin, J.E. Richardson, M. Ringwald
2009 Developmental Biology  
Abstracts Patterning and transcription factors Program/Abstract # 456 Unraveling the gene regulatory network underlying mesoderm subdivision in the sea urchin embryo  ...  The Gene Expression Database (GXD) is a large public resource of mouse developmental expression information from both wild type and mutant specimens.  ...  We show that Sox3 can counteract the Developmental Biology 331 (2009) doi:10.1016/j.ydbio.2009.05.484 Program/Abstract # 457 The Gene Expression Database (GXD): A mouse developmental data resource  ... 
doi:10.1016/j.ydbio.2009.05.485 fatcat:kkftpca5xvbzjimmco4iw672jy

The Gene Expression Database (GXD): A resource of mouse developmental data

Jacqueline Finger, Terry Hayamizu, Ingeborg McCright, Janan Eppig, James Kadin, Joel Richardson, Martin Ringwald
2011 Developmental Biology  
This centralized repository for in situ hybridization gene expression information provides a valuable tool for the research and developmental biology education communities.  ...  opportunity for service learning while gaining familiarity with development, the primary literature and online genomic resources.  ...  The Gene Expression Database (GXD) is a large and freely available resource of mouse developmental expression information.  ... 
doi:10.1016/j.ydbio.2011.05.389 fatcat:ocmbftn3s5dshf5mxatb3quzae

Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD)

Xiangying Jiang, Martin Ringwald, Judith Blake, Haggit Shatkay
2020 Database: The Journal of Biological Databases and Curation  
relevant to the mouse Gene Expression Database (GXD)" by Xiangying Jiang, Martin Ringwald, Judith Blake and Hagit Shatkay (Database, Volume 2017, bax017).  ...  RF-H-and-H represents using half of the GXD dataset for training and the other half for testing. Standard deviation is shown in parentheses.  ... 
doi:10.1093/database/baaa043 pmid:32525206 pmcid:PMC7287504 fatcat:mfeuaxf66ngohpfplcop3lrnbm

GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements

M. Ringwald
2000 Nucleic Acids Research  
The Gene Expression Database (GXD) is a community resource of gene expression information for the laboratory mouse.  ...  GXD is integrated with the Mouse Genome Database (MGD).  ...  We also would like to thank the journal Development for making electronic image files available to us on a regular basis. The Gene Expression Database is supported by NIH grant HD33745.  ... 
doi:10.1093/nar/28.1.115 pmid:10592197 pmcid:PMC102464 fatcat:n24f7g6gebf2vfv7pppjz3lsni

Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD)

Xiangying Jiang, Martin Ringwald, Judith Blake, Hagit Shatkay
2017 Database: The Journal of Biological Databases and Curation  
The Gene Expression Database (GXD) is a comprehensive online database within the Mouse Genome Informatics resource, aiming to provide available information about endogenous gene expression during mouse  ...  Database URL: www.informatics.jax.org V C The Author(s)  ...  The GXD is supported by NIH grant HD062499. Conflict of interest. None declared.  ... 
doi:10.1093/database/bax017 pmid:28365740 pmcid:PMC5467553 fatcat:dk74pwf4czhkxpukpuzj5kie3a

The gene expression database for mouse development (GXD): Putting developmental expression information at your fingertips

Constance M. Smith, Jacqueline H. Finger, James A. Kadin, Joel E. Richardson, Martin Ringwald
2014 Developmental Dynamics  
Using the Gene Expression Database for Mouse Development (GXD) as an example, we illustrate the progress made towards this goal, and discuss relevant issues that apply to developmental databases and developmental  ...  Here we describe the data and search tools of GXD; explain how to use the database most effectively; discuss how we acquire, curate, and integrate developmental expression information; and describe how  ...  Acknowledgments We would like to thank our colleagues from the GXD project, as well as our colleagues from other MGI projects for their contributions to GXD and the larger MGI resource.  ... 
doi:10.1002/dvdy.24155 pmid:24958384 pmcid:PMC4415381 fatcat:tumwmojagvghdeabpmkg7jyq4y

The mouse gene expression database: New features and how to use them effectively

Jacqueline H. Finger, Constance M. Smith, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald
2015 Genesis  
The Gene Expression Database (GXD) is an extensive and freely available community resource of mouse developmental expression data.  ...  As an integral component of the Mouse Genome Informatics (MGI) Resource, GXD combines expression data with genetic, functional, phenotypic and disease-related data, and provides tools for the research  ...  GXD thanks the GEISHA, Xenbase and ZFIN resources for their help in establishing links between our respective databases.  ... 
doi:10.1002/dvg.22864 pmid:26045019 pmcid:PMC4545717 fatcat:6kygkmdf4zh5togap5lhwvqzaq

GXD: a community resource of mouse Gene Expression Data

Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald
2015 Mammalian Genome  
The Gene Expression Database (GXD) is an extensive, easily searchable, and freely available database of mouse gene expression information (www.informatics. jax.org/expression.shtml).  ...  GXD contains information about when and where genes are expressed in different tissues in the mouse, especially during the embryonic period.  ...  The GXD resource has benefited from the work of our former colleagues, as well as from our current colleagues from other MGI projects.  ... 
doi:10.1007/s00335-015-9563-1 pmid:25939429 pmcid:PMC4534488 fatcat:u5hoj6da5nhjlfz6jbvkhlmqxu
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