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The Mouse Gene Expression Database (GXD)
2001
Nucleic Acids Research
The Gene Expression Database (GXD) is a community resource of gene expression information for the laboratory mouse. ...
GXD is integrated with the Mouse Genome Database (MGD). ...
We also would like to thank the journal Development for making electronic image files available to us on a regular basis. The Gene Expression Database is supported by NIH grant HD33745. ...
doi:10.1093/nar/29.1.98
pmid:11125060
pmcid:PMC29814
fatcat:hmixkiky7fbnnbhd5kyahr7jpu
The mouse Gene Expression Database (GXD): 2007 update
2007
Nucleic Acids Research
The Gene Expression Database (GXD) is a community resource of mouse developmental expression information. ...
GXD integrates different types of expression data at the transcript and protein level and captures expression information from many different mouse strains and mutants. ...
ACKNOWLEDGEMENTS We would like to thank our colleagues from the other MGI projects for their contributions to the GXD project and to the larger integrated MGI resource. ...
doi:10.1093/nar/gkl1003
pmid:17130151
pmcid:PMC1716716
fatcat:uricgpyc6bcpvjvm7wr7tfcl6m
The mouse Gene Expression Database (GXD): 2014 update
2013
Nucleic Acids Research
The Gene Expression Database (GXD; http://www. informatics.jax.org/expression.shtml) is an extensive and well-curated community resource of mouse developmental expression information. ...
Integration with the other data in Mouse Genome Informatics (MGI) and interconnections with other databases places GXD's gene expression information in the larger biological and biomedical context. ...
ACKNOWLEDGEMENTS We would like to thank our colleagues from the other MGI projects for their contributions to the GXD project and to the larger MGI resource. ...
doi:10.1093/nar/gkt954
pmid:24163257
pmcid:PMC3965015
fatcat:eogjmum57rcurgukgaz4hdqaq4
The mouse Gene Expression Database (GXD): 2017 update
2016
Nucleic Acids Research
The mouse Gene Expression Database (GXD) is an extensive, well-curated community resource freely available at www.informatics.jax. org/expression.shtml. ...
GXD's gene expression information is integrated with the other data in Mouse Genome Informatics and interconnected with other databases, placing these data in the larger biological and biomedical context ...
Enabling the anatomical comparison of expression and phenotype data GXD uses the Mouse Developmental Anatomy (EMAPA) Ontology to describe gene expression patterns (9, 10) . ...
doi:10.1093/nar/gkw1073
pmid:27899677
pmcid:PMC5210556
fatcat:ap7xedirirbnjdzo5qrckxvf2y
GXD: a Gene Expression Database for the laboratory mouse
1999
Nucleic Acids Research
The Gene Expression Database (GXD) is a community resource that stores and integrates expression information for the laboratory mouse, with a particular emphasis on mouse development, and makes these data ...
GXD is implemented as a relational database and integrated with the Mouse Genome Database (MGD) to enable global analysis of genotype, expression and phenotype information. ...
The Gene Expression Database is supported by NIH grants HD33745 and HD08435. ...
doi:10.1093/nar/27.1.106
pmid:9847152
pmcid:PMC148107
fatcat:q33vgq3e7vdo5igprmyemlkpam
The mouse Gene Expression Database (GXD): updates and enhancements
2004
Nucleic Acids Research
The Gene Expression Database (GXD) is a community resource for gene expression information in the laboratory mouse. ...
Integration with other Mouse Genome Informatics (MGI) databases places the gene expression information in the context of mouse genetic, genomic and phenotypic information. ...
GXD is supported by NIH grant HD33745. The GO project is supported by NIH grant HG02273. ...
doi:10.1093/nar/gkh069
pmid:14681482
pmcid:PMC308803
fatcat:phgvq2wd5valpiel3ogajfx3ee
The Gene Expression Database (GXD) for mouse developmental data
2006
Developmental Biology
The Gene Expression Database (GXD) is a public resource of mouse expression data with a primary focus on development. ...
GXD uses many standardized vocabularies and is fully integrated with the genetic and phenotypic data in the Mouse Genome Database, so expression data can be analyzed in a larger biological context. ...
doi:10.1016/j.ydbio.2006.04.169
fatcat:sexwxf5x2vcudkqoynayrevfy4
The Gene Expression Database (GXD): A mouse developmental data resource
2009
Developmental Biology
Abstracts Patterning and transcription factors Program/Abstract # 456 Unraveling the gene regulatory network underlying mesoderm subdivision in the sea urchin embryo ...
The Gene Expression Database (GXD) is a large public resource of mouse developmental expression information from both wild type and mutant specimens. ...
We show that Sox3 can counteract the Developmental Biology 331 (2009) doi:10.1016/j.ydbio.2009.05.484 Program/Abstract # 457 The Gene Expression Database (GXD): A mouse developmental data resource ...
doi:10.1016/j.ydbio.2009.05.485
fatcat:kkftpca5xvbzjimmco4iw672jy
The Gene Expression Database (GXD): A resource of mouse developmental data
2011
Developmental Biology
This centralized repository for in situ hybridization gene expression information provides a valuable tool for the research and developmental biology education communities. ...
opportunity for service learning while gaining familiarity with development, the primary literature and online genomic resources. ...
The Gene Expression Database (GXD) is a large and freely available resource of mouse developmental expression information. ...
doi:10.1016/j.ydbio.2011.05.389
fatcat:ocmbftn3s5dshf5mxatb3quzae
Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD)
2020
Database: The Journal of Biological Databases and Curation
relevant to the mouse Gene Expression Database (GXD)" by Xiangying Jiang, Martin Ringwald, Judith Blake and Hagit Shatkay (Database, Volume 2017, bax017). ...
RF-H-and-H represents using half of the GXD dataset for training and the other half for testing. Standard deviation is shown in parentheses. ...
doi:10.1093/database/baaa043
pmid:32525206
pmcid:PMC7287504
fatcat:mfeuaxf66ngohpfplcop3lrnbm
GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements
2000
Nucleic Acids Research
The Gene Expression Database (GXD) is a community resource of gene expression information for the laboratory mouse. ...
GXD is integrated with the Mouse Genome Database (MGD). ...
We also would like to thank the journal Development for making electronic image files available to us on a regular basis. The Gene Expression Database is supported by NIH grant HD33745. ...
doi:10.1093/nar/28.1.115
pmid:10592197
pmcid:PMC102464
fatcat:n24f7g6gebf2vfv7pppjz3lsni
Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD)
2017
Database: The Journal of Biological Databases and Curation
The Gene Expression Database (GXD) is a comprehensive online database within the Mouse Genome Informatics resource, aiming to provide available information about endogenous gene expression during mouse ...
Database URL: www.informatics.jax.org V C The Author(s) ...
The GXD is supported by NIH grant HD062499. Conflict of interest. None declared. ...
doi:10.1093/database/bax017
pmid:28365740
pmcid:PMC5467553
fatcat:dk74pwf4czhkxpukpuzj5kie3a
The gene expression database for mouse development (GXD): Putting developmental expression information at your fingertips
2014
Developmental Dynamics
Using the Gene Expression Database for Mouse Development (GXD) as an example, we illustrate the progress made towards this goal, and discuss relevant issues that apply to developmental databases and developmental ...
Here we describe the data and search tools of GXD; explain how to use the database most effectively; discuss how we acquire, curate, and integrate developmental expression information; and describe how ...
Acknowledgments We would like to thank our colleagues from the GXD project, as well as our colleagues from other MGI projects for their contributions to GXD and the larger MGI resource. ...
doi:10.1002/dvdy.24155
pmid:24958384
pmcid:PMC4415381
fatcat:tumwmojagvghdeabpmkg7jyq4y
The mouse gene expression database: New features and how to use them effectively
2015
Genesis
The Gene Expression Database (GXD) is an extensive and freely available community resource of mouse developmental expression data. ...
As an integral component of the Mouse Genome Informatics (MGI) Resource, GXD combines expression data with genetic, functional, phenotypic and disease-related data, and provides tools for the research ...
GXD thanks the GEISHA, Xenbase and ZFIN resources for their help in establishing links between our respective databases. ...
doi:10.1002/dvg.22864
pmid:26045019
pmcid:PMC4545717
fatcat:6kygkmdf4zh5togap5lhwvqzaq
GXD: a community resource of mouse Gene Expression Data
2015
Mammalian Genome
The Gene Expression Database (GXD) is an extensive, easily searchable, and freely available database of mouse gene expression information (www.informatics. jax.org/expression.shtml). ...
GXD contains information about when and where genes are expressed in different tissues in the mouse, especially during the embryonic period. ...
The GXD resource has benefited from the work of our former colleagues, as well as from our current colleagues from other MGI projects. ...
doi:10.1007/s00335-015-9563-1
pmid:25939429
pmcid:PMC4534488
fatcat:u5hoj6da5nhjlfz6jbvkhlmqxu
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