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The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics

Sierra A. T. Moxon, Harold Solbrig, Deepak R. Unni, Dazhi Jiao, Richard M. Bruskiewich, James P. Balhoff, Gaurav Vaidya, William D. Duncan, Harshad Hegde, Mark Miller, Matthew H. Brush, Nomi L. Harris (+2 others)
2021 International Conference on Biomedical Ontology  
The Linked data Modeling Language (LinkML, is an object-oriented data modeling framework that aims to bring semantic web standards to the masses, simplifying the production of  ...  Data integration is a major challenge in the life sciences, due to heterogeneity, complexity, the proliferation of ad-hoc formats and data structures, and poor compliance with FAIR guidelines.  ...  Acknowledgments This work is supported in part by the Genomic Science Program in the U.S.  ... 
dblp:conf/icbo/MoxonSUJBBVDHMB21 fatcat:sq5jcdwervcivcazqs3dw4n2lm

OntoCommons D4.3 - Report on Landscape Analysis of Ontology Engineering Tools

Martin G. Skjæveland, Laura Ann Slaughter, Christian Kindermann
2022 Zenodo  
We find that some areas in ontology engineering seem to be lacking in terms of tool support, e.g., modularisation, conceptual modelling, and ontology reuse.  ...  Lastly, we conduct a desk review analysis of the collected software systems considering novel challenges arising from application domains as put forward by the report on "Requirements on ontology tools  ...  LinkML a. Description: LinkML, the Linked Data Modeling Language, is a flexible modeling 24. Linked Open Vocabularies (LOV) a.  ... 
doi:10.5281/zenodo.6504670 fatcat:dibbp53a2baybojurgosv4cpwq

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data

Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach (+7 others)
2022 Journal of Biomedical Semantics  
Results Through a team-based iterative approach, we created semantically grounded models to represent each of the CDEs, using the SemanticScience Integrated Ontology as the core framework for representing  ...  coding nor expertise in Linked Data or FAIR.  ...  Finally, the authors acknowledge the support of Ana Rath and Franz Schaefer in the development of a conceptual framework for the EJP RD Virtual Platform.  ... 
doi:10.1186/s13326-022-00264-6 pmid:35292119 pmcid:PMC8922780 fatcat:f45isy6t4zexnndxmck7zhy6va