A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Filters
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
2001
Nucleic Acids Research
Preserved Fulltext
InterPro is an integrated documentation resource for protein families, domains and functional sites, which amalgamates the efforts of the PROSITE, PRINTS, Pfam and ProDom database projects. ...
Signature databases are vital tools for identifying distant relationships in novel sequences and hence for inferring protein function. ...
ACKNOWLEDGEMENTS The InterPro project is supported by grant number BIO4-CT98-0052 of the European Commission. T.K.A. is a Royal Society University Research Fellow. ...
doi:10.1093/nar/29.1.37
pmid:11125043
pmcid:PMC29841
fatcat:ft4lb3l2zjhnph2ll42i3jnz3e
InterPro: An integrated documentation resource for protein families, domains and functional sites
2002
Briefings in Bioinformatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2015; you can also visit the original URL.
The file type is application/pdf.
In recognition of this, InterPro was developed as an integrated documentation resource for protein families, domains and functional sites, to rationalise the complementary efforts of the individual protein ...
Release 4.0 of InterPro (November 2001) contains 4,691 entries, representing 3,532 families, 1,068 domains, 74 repeats and 15 sites of posttranslational modification (PTMs) encoded by different regular ...
Acknowledgements The InterPro project is supported by the ProFuSe grant (number QLG2-CT-2000-00517) of the European Commission. ...
doi:10.1093/bib/3.3.225
pmid:12230031
fatcat:2igbmarmcjbpfphuwf6l7ny4cy
InterPro--an integrated documentation resource for protein families, domains and functional sites
2000
Bioinformatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2006; you can also visit the original URL.
The file type is application/pdf.
Motivation: InterPro is a new integrated documentation resource for protein families, domains and functional sites, developed initially as a means of rationalising the complementary efforts of the PROSITE ...
Availability: The database is accessible for text-and sequence-based searches at ...
Acknowledgements The InterPro project is supported by grant number BIO4-CT98-0052 of the European Commission. TKA is a Royal Society University Research Fellow. ...
doi:10.1093/bioinformatics/16.12.1145
pmid:11159333
fatcat:zz6c5bhuwbhlfofasde65zj7ku
Clustering and analysis of protein families
2001
Current Opinion in Structural Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Acknowledgements This work was supported, in part, by grant B104-CT97-2099 from the European Commission. ...
.: The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 2001, 29:37-40. ...
The authors describe the creation of InterPro, a new integrated documentation resource for protein families, domains and functional sites that was developed as a means of rationalising the complementary ...
doi:10.1016/s0959-440x(00)00211-6
pmid:11406384
fatcat:pf4nkex5r5e6npnkdlnysrd6ri
InterPro in 2011: new developments in the family and domain prediction database
2012
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
InterPro (http://www.ebi.ac.uk/interpro/) is a database that integrates diverse information about protein families, domains and functional sites, and makes it freely available to the public via Web-based ...
Herein we give an overview of new developments in the database and its associated software since 2009, including updates to ...
protein families, domains, sites and repeats. ...
doi:10.1093/nar/gks456
pmcid:PMC3378909
fatcat:oqmafftblfcmdgh4a3i4nzqpzu
InterPro in 2011: new developments in the family and domain prediction database
2011
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
protein families, domains, sites and repeats. ...
The aim of InterPro is to combine their individual strengths to provide a single resource through which scientists can access comprehensive information about protein families, domains and functional sites ...
doi:10.1093/nar/gkr948
pmid:22096229
pmcid:PMC3245097
fatcat:awtdl7qobjhnveofe7jxno6ju4
InterPro, progress and status in 2005
2004
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
InterPro, an integrated documentation resource of protein families, domains and functional sites, was created to integrate the major protein signature databases. ...
InterPro covers over 78% of all proteins in the Swiss-Prot and TrEMBL components of UniProt. The database is available for text-and sequencebased searches via a webserver ( ...
ACKNOWLEDGEMENTS The InterPro project is supported by the ProFuSe grant (number QLG2-CT-2000-00517) and the Integr8 grant (number QLRI-CT-2001000015) of the European Commission. ...
doi:10.1093/nar/gki106
pmid:15608177
pmcid:PMC540060
fatcat:ykhpocbakfck3elxzhjb7z34rm
Website Review: InterPro (The Integrated Resource of Protein Domains and Functional Sites). http://www.ebi.ac.uk/interpro/
2000
Yeast
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The family and motif databases, PROSITE, PRINTS, Pfam and ProDom, have been integrated into a powerful resource for protein secondary annotation. ...
Because the contributing databases have different clustering principles and scoring sensitivities, the combined assignments compliment each other for grouping protein families and delineating domains. ...
Other members of the project team are listed on the website at http://www.ebi.ac.uk/interpro/release_notes.html.
Source databases ...
doi:10.1002/1097-0061(200012)17:4<327::aid-yea45>3.3.co;2-b
pmid:11119311
pmcid:PMC2448387
fatcat:37anj5oo5ra65lnckr6vvsmvye
InterPro (The Integrated Resource of Protein Domains and Functional Sites)
2000
Yeast
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The family and motif databases, PROSITE, PRINTS, Pfam and ProDom, have been integrated into a powerful resource for protein secondary annotation. ...
Because the contributing databases have different clustering principles and scoring sensitivities, the combined assignments compliment each other for grouping protein families and delineating domains. ...
Other members of the project team are listed on the website at http://www.ebi.ac.uk/interpro/release_notes.html.
Source databases ...
doi:10.1002/1097-0061(200012)17:4<327::aid-yea45>3.0.co;2-k
fatcat:y52i3tf7fjavbfcvgvaefvudsq
The InterPro Database, 2003 brings increased coverage and new features
2003
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major protein signature databases into one comprehensive ...
resource. ...
This integration will enhance the capability of the database in the field of protein classification and characterisation and make the database, a true integrated resource for complete protein sequence ...
doi:10.1093/nar/gkg046
pmid:12520011
pmcid:PMC165493
fatcat:fy5hcc4yxvgtpgniyqtsnwmqvm
The InterPro protein families database: the classification resource after 15 years
2014
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Here, we report on the status of InterPro Figure 1. InterPro matches for UniProtKB entry Q3JCG5 showing predicted protein family membership, domains and sites. ...
The InterPro database (http://www.ebi.ac.uk/ interpro/) is a freely available resource that can be used to classify sequences into protein families and to predict the presence of important domains and ...
The aim of InterPro is to combine their individual strengths to provide a single resource, through which scientists can access comprehensive information about protein families, domains and functional sites ...
doi:10.1093/nar/gku1243
pmid:25428371
pmcid:PMC4383996
fatcat:4asvzb32obgwhlvdkrfhiokvme
The InterPro protein families and domains database: 20 years on
2020
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2021; you can also visit the original URL.
The file type is application/pdf.
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. ...
Founded in 1999, InterPro has become one of the most widely used resources for protein family annotation. ...
and Siew-Yit Yong. ...
doi:10.1093/nar/gkaa977
pmid:33156333
pmcid:PMC7778928
fatcat:vfs7k3dxr5bcpbpvxbptj6r46m
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes
2001
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2015; you can also visit the original URL.
The file type is application/pdf.
The two main projects used, InterPro and CluSTr, give a new perspective on families, domains and sites and cover 31-67% (InterPro statistics) of the proteins from each of the complete genomes. ...
The SWISS-PROT group at EBI has developed the Proteome Analysis Database utilising existing resources and providing comparative analysis of the predicted protein coding sequences of the complete genomes ...
InterPro InterPro (http://www.ebi.ac.uk/interpro/) (9) is an integrated documentation resource of protein families, domains and functional sites that has been developed initially as a means of rationalising ...
doi:10.1093/nar/29.1.44
pmid:11125045
pmcid:PMC29822
fatcat:ug42g6zpf5bsfoam7zavbsvlki
Tools and resources for identifying protein families, domains and motifs
2001
Genome Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The most useful tools use various methods for identifying motifs or domains found in previously characterized protein families. ...
This article reviews the tools and resources available on the web for identifying signatures within proteins and discusses how they may be used in the analysis of new or unknown protein sequences. ...
documentation resource for protein families, domains
http://www.ebi.ac.uk/interpro/
[49]
and functional sites
IProClass
Integrated protein classification database
http://pir.georgetown.edu/iproclass ...
pmid:11806833
pmcid:PMC150457
fatcat:jqx7k7zk5jbe7pp3nrg22lo32e
Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation
2012
Database: The Journal of Biological Databases and Curation
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
We describe a revised protocol for GO mapping that enables us to assign GO terms to domains based on the function of the individual domain, rather than the function of the families in which the domain ...
The InterPro2GO mappings are comprised of the cross-references between these two resources and are the largest source of GO annotation predictions for proteins. ...
Acknowledgements We thank Emily Dimmer and Claire O'Donovan for their critical reading of this manuscript and Tony Sawford for assistance with protein match counts. Conflict of interest. ...
doi:10.1093/database/bar068
pmid:22301074
pmcid:PMC3270475
fatcat:mczeyk6qqrhxpn2aysoyqgocde
« Previous
Showing results 1 — 15 out of 1,021 results