A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Filters
The Genome Sequence DataBase
2000
Nucleic Acids Research
Preserved Fulltext
The Genome Sequence DataBase (GSDB) is a database of publicly available nucleotide sequences and their associated biological and bibliographic information. ...
The content of GSDB remains up-to-date because publicly available data is acquired from the International Nucleotide Sequence Database Collaboration databases (IC) on a nightly basis. ...
INTRODUCTION The Genome Sequence DataBase (GSDB), operated by the National Center for Genome Resources (NCGR), is a relational database of publicly available nucleotide sequences and associated biological ...
doi:10.1093/nar/28.1.31
pmid:10592174
pmcid:PMC102463
fatcat:2igvanrohbd6xbeicalhl7c65a
The Sequenced Angiosperm Genomes and Genome Databases
2018
Frontiers in Plant Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Despite the numerous advances in genome reports or sequencing technologies, no review covers all the released angiosperm genomes and the genome databases for data sharing. ...
Based on the rapid advances and innovations in the database reconstruction in the last few years, here we provide a comprehensive review for three major types of angiosperm genome databases, including ...
ACKNOWLEDGMENTS This work was supported by the National Key Research and Development Program of China (2016YFD0100305) and National Natural Science Foundation of China (81502437), and a start-up fund from ...
doi:10.3389/fpls.2018.00418
pmid:29706973
pmcid:PMC5909171
fatcat:v5av6eiadrgw5lmt2qmzqlesrq
The Genome Sequence DataBase (GSDB): meeting the challenge of genomic sequencing
1996
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
The genome sequence database (GSDB) is a complete, publicly available relational database of DNA sequences and annotation maintained by the National Center for Genome Resources (NCGR) under a Cooperative ...
GSDB provides direct, client-server access to the database for data contributions, community annotation and SQL queries. ...
ACKNOWLEDGEMENTS The Genome Sequence DataBase is supported by Cooperative Agreement 95ER62062 between the National Center for Genome Resources and the US Department of Energy, Office of Health and Environmental ...
doi:10.1093/nar/24.1.13
pmid:8594561
pmcid:PMC145611
fatcat:4ryuhvekv5gm3ectcxxhhqdxoi
INE: The Rice Genome Sequence Database
1999
Genome Informatics Series
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2022; you can also visit the original URL.
The file type is application/pdf.
Acknowledgment This work is supported by the Ministry of Agriculture , Forestry and Fisheries (MAFF) and the Japan Racing Association (JRA). The MAFF DNA Bank provides the server for INE . ...
So far sequenced PACs with the completed annotation are already incorporated in this database. As the different groups accumulate genome sequence, the data will be deposited in this database. ...
:82/giot/INE.html) to serve as the central data resource for the rice genome sequencing effort. 2 Features of INE Database INE is primarily designed to integrate all the genome information in rice. ...
doi:10.11234/gi1990.10.276
fatcat:y66bk4ieazgrvczi33j6d2wxvu
Sequence resources at the Candida Genome Database
2007
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
In this database update, we describe the sequence information available for C.albicans, the sequence information contained in CGD, and the tools for sequence retrieval, analysis and comparison that CGD ...
The Candida Genome Database (CGD, http://www. candidagenome.org/) contains a curated collection of genomic information and community resources for researchers who are interested in the molecular biology ...
and reconcile versions of the sequence; and Mike Cherry and the SGD Group for helpful advice and discussions. ...
doi:10.1093/nar/gkl899
pmid:17090582
pmcid:PMC1669745
fatcat:wr5gl2rnvbfqta6duvzamgh7ou
The Genome Sequence DataBase: towards an integrated functional genomics resource
1999
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
During 1998 the primary focus of the Genome Sequence DataBase (GSDB; http://www.ncgr.org/gsdb ) located at the National Center for Genome Resources (NCGR) has been to improve data quality, improve data ...
The Sequence Tag Alignment and Consensus Knowledgebase (STACK), a database of human expressed gene sequences developed by the South African National Bioinformatics Institute (SANBI), became available within ...
ACKNOWLEDGEMENTS This work was funded by Cooperative Agreement DE-FC03-95ER62062 with the Office of Biological and Environmental Research of the Department of Energy. ...
doi:10.1093/nar/27.1.35
pmid:9847136
pmcid:PMC148091
fatcat:22zl4wfdfrd37nbj23zssjx4gm
Drosophila Genomic Sequence Annotation Using the BLOCKS+ Database
2000
Genome Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Detecting a hit in a sequence data bank is frequently the best clue as to the function of a gene, so that sequence similarity searching is de rigeur for any genomic annotation effort. ...
Each strand of the entire sequence was used as query of the BLOCKS+ database of conserved regions of proteins. ...
ACKNOWLEDGMENTS We thank the GASP team for motivating this study. This work was supported by a grant from NIH. The publication costs of this article were defrayed in part by payment of page charges. ...
doi:10.1101/gr.10.4.543
pmid:10779495
pmcid:PMC310867
fatcat:wfdq6bhrkrcj7acyzaobfvjlai
The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes
1997
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
The Genome Sequence DataBase (GSDB) has completed its conversion to an improved relational database. The new database, GSDB 1.0, is fully operational and publicly available. ...
All methods of data contribution and data retrieval fully support the new data types that have been incorporated into GSDB, including discontiguous sequences, multiple sequence alignments, and community ...
ACKNOWLEDGMENTS The Genome Sequence DataBase is supported by Cooperative Agreement DE-FC03-95ER62062 between the National Center for Genome Resources and the US Department of Energy, Office of Health and ...
doi:10.1093/nar/25.1.18
pmid:9016496
pmcid:PMC146367
fatcat:gzsalve45fedjhxzu4hsxa4ali
Protein sequence databases in the context of genome projects
1994
Genome Informatics Series
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2022; you can also visit the original URL.
The file type is application/pdf.
Recent developments concerning the SWISS-PROT and PROSITE databases are discussed in the context of genome projects and of new network access tools SWISS-PROT[1] is a curated protein sequence database ...
In the recent months we have developed the database in the following directions: • We have selected a number of organisms that are the target of genome sequencing and/or mapping projects and for which ...
PROSITE [2] is a compilation of sites and patterns found in protein sequences; it can be used as a method of determining the function of uncharacterized proteins translated from genomic or cDNA sequences ...
doi:10.11234/gi1990.5.238
fatcat:si2f7vc5nzbplddrcl5n4jr7sa
Beyond the human genome sequencing. HOWDY: An integrated human genome database
2001
Journal of Information Processing and Management
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Author Abstract: More than 90 percent of the whole human genomic DNA that includes 3 billion bases has sequenced and published by the Human Genome Project over past 10 years. ...
As a part of ALIS (Advanced Science Information Systems) Project, we have developed a database named HOWDY that can link many different human genome databases on the Internet dynamically. ...
1 科学技術振興事業団 データベース開発部(〒102-8666
東京都千代田区四番町5-3)
Tel. 03(5214)8491 E-mail: mhirakaw@jst.go.jp
1 Japan Science and Technology Corporation, Advanced
Databases Department
(5-3, Yonban-cho, Chiyoda-ku ...
doi:10.1241/johokanri.44.342
fatcat:cwyleefthzechgljbjc7txt36m
gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes
2016
Database: The Journal of Biological Databases and Curation
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The gEVE database provides nucleotide and amino acid sequences, genomic loci and functional annotations of EVE ORFs for all 20 genomes. ...
In analyzing RNA-seq data with the gEVE database, we successfully identified the expressed EVE genes, suggesting that the gEVE database facilitates studies of the genomic analyses of various mammalian ...
Computations were performed partially on the NIG supercomputer at the ROIS National Institute of Genetics. ...
doi:10.1093/database/baw087
pmid:27242033
pmcid:PMC4885607
fatcat:vw27iroitbhdjnmew3ez46ajke
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform
2012
Bioinformatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Note that this fulltext copy is not of the "primary" version of this work. The version it corresponds to is:
2012 pre-print arXiv:1205.0192v1 fatcat:aiwdrrjalrbepnddsqbe7tenj4Other Versions
With these techniques, a 45x coverage of real human genome sequence data compresses losslessly to under 0.5 bits per base, allowing the 135.3Gbp of sequence to fit into only 8.2Gbytes of space (trimming ...
these techniques from being widely applied to the large sets of sequences often encountered as the outcome of DNA sequencing experiments. ...
ACKNOWLEDGEMENT The authors would like to thank Dirk Evers for his support throughout this project. ...
doi:10.1093/bioinformatics/bts173
pmid:22556365
fatcat:fz2icliuazaifkskeyvvzgbmce
ChickVD: a sequence variation database for the chicken genome
2004
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
We compared the sequence reads from the three chicken breeds to the 6.6X RJF reference genome sequence (Chicken Genome Consortium, 2004). ...
University Genome Sequencing Center (WUGSC), as a reference chicken genome sequence (Chicken Genome Consortium, 2004). ...
doi:10.1093/nar/gki092
pmid:15608233
pmcid:PMC540046
fatcat:u6bdm6ialbbdxcigzohb2qvxtm
SSRD: Simple Sequence Repeats Database of the Human Genome
2003
Comparative and Functional Genomics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The simple sequence repeats database (SSRD) for the human genome was created for easy access to such repeats, for analysis, and to be used to understand their biological significance. ...
The resource will facilitate repeat sequence analysis in the human genome and the understanding of the functional and evolutionary significance of simple sequence repeats. ...
Acknowledgements The authors would like to thank Sreedhar, Kavitha, Siva Prasad and Saritha for their support in developing the SSRD database. ...
doi:10.1002/cfg.289
pmid:18629286
pmcid:PMC2448451
fatcat:soqjbcwkinhhpalpeedafdk2pa
The Genbank Database and the Flow of Sequence Data for the Human Genome
[chapter]
1988
Biotechnology and the Human Genome
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Therefore, if one goal of sequencing a complete genome is to get a picture of
the information
set necessary rough calculation,
in GenBank there is about 20% of the complete genome, and this
is the ...
That allows one to lump from our database into the human gene mapping library database in New Haven using the human gene names to link those sequences-thus connecting genes that have been sequenced with ...
doi:10.1007/978-1-4684-5547-2_6
fatcat:ajm35ntehbar7jgph7ncxp5ab4
« Previous
Showing results 1 — 15 out of 641,803 results