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Gene expression analysis of rocket salad under pre-harvest and postharvest stresses: A transcriptomic resource for Diplotaxis tenuifolia

Marina Cavaiuolo, Giacomo Cocetta, Natasha Damiana Spadafora, Carsten T. Müller, Hilary J. Rogers, Antonio Ferrante, Jin-Song Zhang
2017 PLoS ONE  
Dehydration and wounding had the greatest effect on the transcriptome and different stresses elicited changes in the expression of genes related to overlapping groups of hormones.  ...  Transcription factors and genes involved in plant growth regulator signaling, autophagy, senescence and glucosinolate metabolism were the most affected by the stresses.  ...  KAAS web-based software was used to query the Kyoto Encyclopedia of Genes and Genomes (KEGG) [35] database using Arabidopsis and the bidirectional best hit assignment method (BBH) to automatically generate  ... 
doi:10.1371/journal.pone.0178119 pmid:28558066 pmcid:PMC5448768 fatcat:xko4duudqfeqpnqrgozuxxmxiy

Abstracts 2019 Joint IOCV XXI and IRCHLB VI

Organization IOCV
2021 Journal of citrus pathology  
The availability of pathogen tested, true-to-type propagative material is critical for successful citrus production.  ...  The NGS data was manually analysed in-house, using CLC workbench 6, Geneious, and an adaption of the VirusFinder pipeline (Wang et al. 2013) ; and also analysed with web-based automated pipelines.  ...  For mature fruit (3 weeks before harvest) still attached on the tree, 60% of those from S trees were "loose fruit" (fruit detachment force [FDF] < 6 KgF).  ... 
doi:10.5070/c46255309 fatcat:p2pg2xddanazvnxeia5dj36qdq

ABSTRACTS

2016 Journal of nematology  
The same results were shown for foliage weight, but for roots the strain 55 had a greater weight than the other strains and the control (p<0.05).  ...  Several pests and diseases affect the crop, with the plant parasitic nematode Globodera rostochiensis one of the most frequent, affecting its growth and productivity in many areas.  ...  Several unknown fungi (<97% query cover and/or <97% sequence identity to database listings) were also observed.  ... 
doi:10.21307/jofnem-2017-038 fatcat:uefdcep5anenxmpagigpw6ma5e