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The COVID-19 Ontology

Astghik Sargsyan, Alpha Tom Kodamullil, Shounak Baksi, Johannes Darms, Sumit Madan, Stephan Gebel, Oliver Keminer, Geena Mariya Jose, Helena Balabin, Lauren Nicole DeLong, Manfred Kohler, Marc Jacobs (+1 others)
2020 Bioinformatics  
COVID-19 Ontology is released under a Creative Commons 4.0 License and shared via https://github.com/covid-19-ontology/covid-19.  ...  The ontology is also deposited in BioPortal at https://bioportal.bioontology.org/ontologies/COVID-19.  ...  Acknowledgements We thank Thrishna KG, Abish K, Priya S from Causality Biomodels for the ontology curation work. Funding This work has been supported by the MAVO program of the Fraunhofer Society.  ... 
doi:10.1093/bioinformatics/btaa1057 pmid:33346828 pmcid:PMC7799333 fatcat:ttlpagxf6rar7e6au2hmvsw3o4

The COVID-19 epidemiology and monitoring ontology

Núria Queralt-Rosinach, Paul N. Schofield, Robert Hoehndorf, Claus Weiland, Erik Schultes, César H. Bernabé, Marco Roos
2021 Zenodo  
Recently, several new COVID-19 ontologies have developed such as the IDO extension or CIDO.  ...  One year ago, the novel COVID-19 infectious disease emerged and spread, causing high mortality and morbidity rates worldwide.  ...  Recently, several new COVID-19 ontologies have developed such as the IDO extension [2] or CIDO [3] .  ... 
doi:10.5281/zenodo.5752959 fatcat:7b2eq2mq7jcbvjttaegklpyaqq

The Infectious Disease Ontology in the age of COVID-19

Shane Babcock, John Beverley, Lindsay G. Cowell, Barry Smith
2021 Journal of Biomedical Semantics  
Infectious Disease Ontology (CIDO); and an extension of CIDO focusing on COVID-19 (IDO-COVID-19).  ...  Results To assist the integration and analysis of COVID-19 data, and viral infectious disease data more generally, we have recently developed three new IDO extensions: IDO Virus (VIDO); the Coronavirus  ...  Acknowledgements We would like to acknowledge the following for their contributions to IDO Core: Alex Diehl, Alan Ruttenberg, Albert Goldfain, Bjoern Peters, and Jie Zheng.  ... 
doi:10.1186/s13326-021-00245-1 pmid:34275487 pmcid:PMC8286442 fatcat:dpow5miuxzevnlu6q6224cblwi

Detecting fake news for the new coronavirus by reasoning on the Covid-19 ontology [article]

Adrian Groza
2020 arXiv   pre-print
In the context of the Covid-19 pandemic, many were quick to spread deceptive information.  ...  The not-trusted information comes in natural language (e.g. "Covid-19 affects only the elderly"). To automatically convert into DLs, I used the FRED converter.  ...  Note also the need of a trusted Covid-19 ontology. There is ongoing work on formalising knowledge about Covid-19 . First,Coronavirus Infectious Disease Ontology (CIDO) 4 .  ... 
arXiv:2004.12330v1 fatcat:ctt45of3pvbozbzchgwvh6rnhu

Reference ontology and database annotation of the COVID-19 Open Research Dataset (CORD-19) [article]

Oliver Giles, Rachael Huntley, Anneli Karlsson, Jane Lomax, James Malone
2020 bioRxiv   pre-print
The COVID-19 Open Research Dataset (CORD-19) was released in March 2020 to allow the machine learning and wider research community to develop techniques to answer scientific questions on COVID-19.  ...  a number of large reference ontologies and vocabularies including domains of genes, proteins, drugs and virus strains.  ...  Acknowledgements We would like to thank Chris Mungall for his suggestions on using the Protein Ontology and Lee Harland for his  ... 
doi:10.1101/2020.10.04.325266 fatcat:khwq3hwj3fbsjjdrd2ewfoj2aq

Expanding the Mammalian Phenotype Ontology to Meet the Needs of COVID-19 Model Curation

Susan M. Bello, Anna V. Anagnostopoulos, Cynthia L. Smith
2021 International Conference on Biomedical Ontology  
Through the course of the COVID-19 pandemic a wide array of signs and symptoms displayed by patients have been identified.  ...  This review identified over 350 COVID-19 signs and symptoms and resulted in the addition of 127 new MP terms.  ...  We would like to thank the Human Phenotype Ontology team, in particular Nicole Vasilevsky, for help and feedback during this project.  ... 
dblp:conf/icbo/BelloAS21 fatcat:bzmzr7urufb6tncv2mjxsyqmqy

A Global Perspective on the COVID 19 Crisis and an Ontological Theology Perspective

Erwin Samuel Henderson
2021 Pharos journal of theology  
This article asks whether human history has any bearing on understanding and interpreting the Covid 19 pandemic.  ...  It more importantly seeks to respond to the question, is there a possible conjuncture with an ontological theology view of God and the world?  ...  In this section, the eight observations synthesize the global Covid-19 overview and the associated challenges to life in this generation, providing the contextual backdrop to which ontological theology  ... 
doi:10.46222/pharosjot.10212 fatcat:4elfoqk7evaxbifsk5cwrmnirm

Wikidata WikiProject COVID-19: Modelling the Pandemic in Real Time (short paper)

Tiago Lubiana
2020 International Conference on Biomedical Ontology  
The COVID-19 crisis has led to a surge in biomedical data related to COVID-19.  ...  This work is a case report on the WikiProject COVID-19 on Wikidata and possible implications for the biomedical community.  ...  SARS-CoV-2 and the COVID-19 pandemic.  ... 
dblp:conf/icbo/Lubiana20 fatcat:t6amtgzv65cnvdkx3eyhik3bd4

Equalities in Freefall? Ontological Insecurity and the long term Impact of COVID‐19 in the Academy

Katharine A.M. Wright, Toni Haastrup, Roberta Guerrina
2020 Gender, Work & Organization  
This intervention focuses on the impact of the global crisis resulting from the COVID-19 pandemic on existing racialized and gendered inequalities within the academy and in particular our discipline of  ...  While university managers seek to reassure university staff of the temporary nature of COVID-19 interventions, we argue that the possibilities for progressive leaps at a later state of institutional regeneration  ...  COVID-19 mitigations.  ... 
doi:10.1111/gwao.12518 fatcat:2iptxmgro5asjj42vz47xjz2uy

An Ontology-Based Framework for Psychological Monitoring in Education During the COVID-19 Pandemic

Alia El Bolock, Slim Abdennadher, Cornelia Herbert
2021 Frontiers in Psychology  
BackgroundEspecially in the current crisis of the COVID-19 pandemic and the lockdown it entailed, technology became crucial.  ...  In this manuscript, we use and apply CCOnto as a theoretical and formal description system to categorize psychological factors that influence student behavior during the COVID-19 situation.  ...  How do you feel during the COVID-19 pandemic?  ... 
doi:10.3389/fpsyg.2021.673586 pmid:34366992 pmcid:PMC8339378 fatcat:kjhsfqhs7ncvbpssquhwzov7w4

Suicide in covid-19 times: Possibilities of understanding in the light of Heideggerian ontology

Ana Karina Silva Azevedo, Elza Dutra
2020 Estudos de Psicologia (Natal)  
One of the possible reflections in the face of the reality that COVID-19 announced to us was the threat to the illusion of our control over life.  ...  The sufferings experienced in a scenario like that of COVID-19 announce that the suicidal risk can be increased in the face of a pandemic's emotional impact.  ...  It is not possible to say that the COVID-19 pandemic is affecting people in the same way.  ... 
doi:10.22491/1678-4669.20200045 doaj:6451499285094fdb87307e200d3378af fatcat:o7t4ayudlveefagvzic3thba2q

The Struggle for Certainty: Ontological Security, the Rise of Nationalism, and Australia-China Tensions after COVID-19

Guangyi Pan, Alexander Korolev
2021 Journal of Chinese Political Science  
A contributing factor behind this policy is Australia's quest for ontological security, which, in the context of COVID-19, has triggered a rise in anti-China sentiment.  ...  The uncertainties created by the COVID-19 pandemic have changed the familiar external environment and challenged Australia's ability to interpret this new environment and adjust to it, which has triggered  ...  COVID-19, the Rise of Nationalism and Australia's Ontological Insecurity The COVID-19 pandemic has undoubtedly created greater uncertainty in the world [47, 64] , as highlighted by accelerated deglobalization  ... 
doi:10.1007/s11366-020-09710-7 pmid:33424219 pmcid:PMC7783695 fatcat:fvrhekxyd5djfmtcajjdshovt4

Distance Education and Pursuit of the Common at the Time of COVID-19

Naoko Saito, Tomohiro Akiyama
2021 Philosophy of Education  
Against this background, this essay focuses on the digital commons, which we believe is a potentially fruitful concept for reconsidering the idea of the common at the time of COVID-19.  ...  The radical changes in social systems and people's ways of living that have arisen with the coronavirus disease of 2019 (COVID-19), and the difficulties and critical situations that people are now confronting  ...  some challenges in the creation of the digital commons as evidenced in COVID-19.  ... 
doi:10.47925/77.2.022 fatcat:atkkqcve55anvdou6dxlw55myy

A Framework for Supporting Well-being using the Character Computing Ontology - Anxiety and Sleep Quality during COVID-19

Alia El Bolock, Slim Abdennadher, Cornelia Herbert
2022 Open Psychology  
anxiety, and depression predisposition during the COVID-19 pandemic based on user-input data.  ...  In this paper, we present a framework for developing applications for dealing with changes in well-being during the COVID-19 pandemic.  ...  This is especially integral in times of global crisis, like the COVID-19 pandemic, which not only affect human health but behavior and well-being.  ... 
doi:10.1515/psych-2022-0011 fatcat:mtdk26tikfaj7b6tku4aa75xs4

Integration of ontology with machine learning to predict the presence of covid-19 based on symptoms [article]

Hakim El Massari, Noreddine Gherabi, Sajida Mhammedi, Hamza Ghandi, Fatima Qanouni, Mohamed Bahaj
2022 arXiv   pre-print
In this paper, we will present how ontologies can aid in predicting the presence of covid-19 based on symptoms.  ...  Coronavirus (covid 19) is one of the most dangerous viruses that have spread all over the world.  ...  ISSN: 2302-9285  Integration of ontology with machine learning to predict the presence of covid-19 … (Hakim El Massari) 2807 accuracy, recall, and precision.  ... 
arXiv:1205.5923v2 fatcat:6qi6hwabkbfojozk4pj34xpfcm
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