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The 4th International Workshop on Software Engineering for HPC in Computational Science and Engineering

Jeffrey C. Carver, Neil Chue Hong, Selim Ciraci
2017 Computing in science & engineering (Print)  
Despite the increasing demand for utilizing HPC for CSE applications, software development for HPC historically attracted little attention from the SE community.  ...  This workshop, the fourth in the series to be co-located with the Supercomputing conference series, examined two main topics: testing and trade-offs.  ...  , and maintenance practices) to support and ease the development of Computational Science & Engineering (CSE) software for High Performance Computing (HPC).  ... 
doi:10.1109/mcse.2017.28 fatcat:qmjhzuw7cvbotfclysf5salp4u

SC20 Tutorial: Better Scientific Software [article]

David E. Bernholdt, Anshu Dubey, Patricia Grubel, Rinku Gupta
2020 Zenodo  
The computational science and engineering (CSE) community is in the midst of an extremely challenging period created by the confluence of disruptive changes in computing architectures, demand for greater  ...  Presented at SC '20: International Conference for High Performance Computing, Networking, Storage and Analysis, online, 2020 on 2020-11-10.  ...  Practices for HPC Training and Education Wednesday, Nov. 11 2:30pm-6:30pm ET Workshop Correctness 2020: 4th International Workshop on Software Correctness for HPC Applications Thursday, Nov.  ... 
doi:10.5281/zenodo.4386670 fatcat:7pod3zrk4fbn5elmhxcovmqf3q

Cloud computing for healthcare research information sharing

Yunyong Guo, Mu-Hsing Kuo, Tony Sahama
2012 4th IEEE International Conference on Cloud Computing Technology and Science Proceedings  
The "Cloud" is a natural evolution of distributed computing and of the widespread adaption of vi resources are provided as services, via the Internet and on International Conference and Workshops on Cloud  ...  Computing Technology and Science researchers, developers and industry representatives who work on cloud computing and related technologies.  ...  Security and Privacy  ... 
doi:10.1109/cloudcom.2012.6427561 dblp:conf/cloudcom/GuoKS12 fatcat:vvqc5mztm5cj7i27ddzcb2mb7m

Facilitating collaboration in high-performance computing projects with an interaction room

Matthias Book, Morris Riedel, Helmut Neukirchen, Markus Götz
2017 Proceedings of the 4th ACM SIGPLAN International Workshop on Software Engineering for Parallel Systems - SEPS 2017  
The design, development and deployment of scientific computing applications can be quite complex as they require scientific, High-Performance Computing (HPC), and software engineering expertise.  ...  Often, HPC applications are however developed by end users who are experts in their scientific domain, but need support from a supercomputing centre for the engineering and optimization aspects.  ...  Acknowledgments This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Grant Agreement No. 754304 DEEP-EST.  ... 
doi:10.1145/3141865.3142467 dblp:conf/oopsla/BookRNG17 fatcat:yeja52rqbfdl3e6rbqg3z3gesi

Progress in computational thinking, and expanding the HPC community

Jeannette M. Wing, Dan Stanzione
2016 Communications of the ACM  
The Third Pillar I knew in the science and engineering disciplines, computation would be the third pillar of the scientific method, along with theory and experimentation.  ...  If you are in HPC (high-performance computing) or a related field, you know SC16 (http://sc16.supercomputing.org/) as the leading international conference for high-performance computing, networking, storage  ... 
doi:10.1145/2933410 fatcat:cspkihgn6be5bbnyqie44b35fy

D5.1.3: Fourth PRACE Industrial Seminar

Marcin Ostasz
2012 Zenodo  
As a next step following the event, PRACE 1st Implementation Phase Work Package 5 will now focus on working closely with SMEs, Engineering companies and Independent Software Providers in order to define  ...  parallel software kit that addresses one of the main obstacles to using HPC by smaller companies: the lack of knowledge and resources needed to adopt HPC solutions.  ...  Due to growing place of HPC in both science and industry a strong European HPC eco-system ranging from technology providers to users is a key asset for science excellence and industry leadership.  ... 
doi:10.5281/zenodo.6552933 fatcat:q5jvgntcmjbyhabyc45phozcza

Scalable black-box prediction models for multi-dimensional adaptation on NUMA multi-cores

Aleksandr Khasymski, Dimitrios S. Nikolopoulos
2014 International Journal of Parallel, Emergent and Distributed Systems  
Research interests Parallel computing systems hardware-software boundary: Runtime systems, ubiquitous parallel programming models, memory management, energy-efficient parallel execution, operating systems  ...  Parallel computer architecture: chip multiprocessors, computational accelerators, heterogeneous computer architectures, emerging memory technologies, heterogeneous memory hierarchies.  ...  Programming the Energy Efficiency of HPC Systems. In: Proceedings of the 4th International Conference on Energy-Aware High Performance Computing. Keynote Talk. Dresden, Germany. 141.  ... 
doi:10.1080/17445760.2014.895346 fatcat:32mn2ijvbja5njdo43axnsjmjq

The German Network for Bioinformatics Infrastructure (de.NBI) and software applications for microbial genome analysis

Alexander Goesmann
2022 Zenodo  
Alexander Goesmann, Justus Liebig University Giessen, on the German Network for Bioinformatics Infrastructure (de.NBI), presented at HeFDI Data Talks 2021.  ...  Data management and analysis based on FAIR principles • Scalable and flexible IT environments AND software frameworks are required for life science researchers, data analysts and software developers  ...  • 5th de.NBI Genomics training course • RNA-seq workshop for beginners: from sequences to visualization • de.NBI - CeBiTec Nanopore Best Practice Workshop4th de.NBI Training Course on Metagenome  ... 
doi:10.5281/zenodo.5814614 fatcat:iiwgi3nkhfhmflrpx5lcbif57i

Parallelism-based approaches in computational biology: a view from diverse case studies

Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2017 Cluster Computing  
The special issue collects considerably extended and improved versions of the best papers, accepted and presented in PBio 2016 (4th International Workshop on Parallelism in Bioinformatics, and part of  ...  The domains and topics covered in these 6 papers are timely and important, and the authors have done an excellent job of presenting the material.  ...  Acknowledgements This work was partially funded by the AEI (State Research Agency, Spain) and the ERDF (European Regional Development Fund, EU), under the contract TIN2016-76259-P (PROTEIN project).  ... 
doi:10.1007/s10586-017-1037-7 fatcat:ptpiyxc6uzft3hzno7zyo5gtai

Information engineering infrastructure for life sciences and its implementation in China

WeiMin Zhu, YunPing Zhu, XiaoLing Yang
2013 Science China Life Sciences  
Information engineering infrastructure for life sciences and its implementation in China.  ...  era, the era of the 4th paradigm.  ...  from life sciences, organized a workshop in 2011.  ... 
doi:10.1007/s11427-013-4440-1 pmid:23526387 fatcat:mxamluxjdzbnfdgjdwncvixyxe

Guest Editors' Introduction: Special Issue on Applications for the Heterogeneous Computing Era

Pavan Balaji, Satoshi Matsuoka
2013 The international journal of high performance computing applications  
The performance predictions of two full-scale HPC applications, HYCOM and Milc, are also presented in the paper for two forms of accelerators: GPUs and FPGAs.  ...  We hope the articles in this special issue will provide relevant insights into the emerging trends in parallel programming models and systems software for HEC systems.  ...  Fellow of the Northwestern-Argonne Institute of Science and Engineering at Northwestern University.  ... 
doi:10.1177/1094342013481158 fatcat:tokuyapoazca5mbvklsrbrlbse

Table of contents

2019 2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID)  
Scattering Division, Oak Ridge National Laboratory) DBDM 2019: 4th IEEE/ACM International Workshop on Distributed Big Data Management Effective and Efficient Big Data Management in Distributed Environments  ...  Hayot-Sasson (Concordia University), Shawn T Brown (Montreal Neurological Institute, McGill University, Montreal, Canada), and Tristan Glatard (Department of Computer Science and Software Engineering  ... 
doi:10.1109/ccgrid.2019.00004 fatcat:onacgguezvdwnaqvpfjjosy75i

Opportunities and Challenges for the Life Sciences Community

Eugene Kolker, Elizabeth Stewart, Vural Ozdemir
2012 Omics  
Straightforward access to data, computing, and analysis resources will enable true democratization of research competitions; thus investigators will compete based on the merits and broader impact of their  ...  ideas and approaches rather than on the scale of their institutional resources.  ...  Acknowledgments This policy report and DISW workshops were supported by the NSF Grant DBI-0969929 and SCRI internal funding to E. Kolker (Principal Investigator).  ... 
doi:10.1089/omi.2011.0152 pmid:22401659 pmcid:PMC3300061 fatcat:ueobynqjonc3dfwa7zds7rpzce

NFDI4Ing - the National Research Data Infrastructure for Engineering Sciences

Robert H. Schmitt, Verena Anthofer, Sören Auer, Sait Başkaya, Christian Bischof, Torsten Bronger, Florian Claus, Florian Cordes, Évariste Demandt, Thomas Eifert, Bernd Flemisch, Matthias Fuchs (+39 others)
2020 Zenodo  
A broad consensus on typical methods and workflows in engineering research has been established: The archetypes.  ...  As one important step, NFDI4Ing has taken on the task of structuring the wealth of concrete needs in research data management.  ...  Working within the computational sciences, I do not work in labs, but exclusively on computers and computing clusters.  ... 
doi:10.5281/zenodo.4015201 fatcat:qud4tskyyjfrhcnkt4qjufaeyi

D9.2.2: Industrial Seminar - 5th PRACE Executive Industrial Seminar 2013

Thomas Bönisch, Thomas Weitzel, Bärbel Große-Wöhrmann
2013 Zenodo  
In addition, thematic sessions on HPC industrial applications in particular in the automotive and aerospace industry have been provided.  ...  of the benefits and drawbacks of using open source software in industry.  ...  Acknowledgements The Seminar Programme Committee would like to thank the HLRS for hosting the event.  ... 
doi:10.5281/zenodo.6572389 fatcat:s7tft3i3xrbk7j7jk2m43i5pvm
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