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Improving the Test-Retest Reliability of Resting State fMRI by Removing the Impact of Sleep

Jiahui Wang, Junwei Han, Vinh T. Nguyen, Lei Guo, Christine C. Guo
<span title="2017-05-08">2017</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wrk3kouosrhcxiprcbguskdipu" style="color: black;">Frontiers in Neuroscience</a> </i> &nbsp;
effects on the test-retest reliability of functional connectivity measures.  ...  Consequently, the test-retest reliability of rs-fMRI measures is moderate at best, falling short of widespread use in the clinic.  ...  In addition to connectivity measures between individual brain regions, graph theory has been applied to rs-fMRI connectivity networks to measure higher order characteristics of brain networks, such as  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2017.00249">doi:10.3389/fnins.2017.00249</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28533739">pmid:28533739</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5420587/">pmcid:PMC5420587</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fro3xhoolzhd5ctfgpsmlqpore">fatcat:fro3xhoolzhd5ctfgpsmlqpore</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190307094801/http://pdfs.semanticscholar.org/f747/e628581227700b00390fda3fe7f699799d67.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f7/47/f747e628581227700b00390fda3fe7f699799d67.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2017.00249"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5420587" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Reproducibility of Graph-Theoretic Brain Network Metrics: A Systematic Review

Thomas Welton, Daniel A. Kent, Dorothee P. Auer, Robert A. Dineen
<span title="">2015</span> <i title="Mary Ann Liebert Inc"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/v4t2k6us4zdn7imahrf7iujoiq" style="color: black;">Brain Connectivity</a> </i> &nbsp;
This systematic review aimed to assess the reproducibility of graph-theoretic brain network metrics.  ...  Primary research studies of test-retest reliability conducted on healthy human subjects were included that quantified test-retest reliability using either the intraclass correlation coefficient (ICC) or  ...  Zuo and Xing (2014) conducted a qualitative review of the test-retest reliability of restingstate fMRI measurements in human brain networks, but did not focus on graph metrics.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1089/brain.2014.0313">doi:10.1089/brain.2014.0313</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25490902">pmid:25490902</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4432917/">pmcid:PMC4432917</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zxnjy5ncnbbehpxnm2ozwyxfsm">fatcat:zxnjy5ncnbbehpxnm2ozwyxfsm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191205164224/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC4432917&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c3/5a/c35a9f28b766872880633c9456e7d58b99197b0e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1089/brain.2014.0313"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432917" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Graph Theoretical Analysis of Functional Brain Networks: Test-Retest Evaluation on Short- and Long-Term Resting-State Functional MRI Data

Jin-Hui Wang, Xi-Nian Zuo, Suril Gohel, Michael P. Milham, Bharat B. Biswal, Yong He, Marcus Kaiser
<span title="2011-07-19">2011</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
However, the test-retest (TRT) reliability of graph metrics of functional networks has not been systematically examined.  ...  Here, we investigated TRT reliability of topological metrics of functional brain networks derived from resting-state functional magnetic resonance imaging data.  ...  In conclusion, we studied the TRT reliability of graph-based network metrics derived from resting-state fMRI data and the effects of several factors on the reliability.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0021976">doi:10.1371/journal.pone.0021976</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21818285">pmid:21818285</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3139595/">pmcid:PMC3139595</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rdzteqp55bdgjhxjdcochcldqy">fatcat:rdzteqp55bdgjhxjdcochcldqy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170930010742/http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0021976&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/be/0a/be0adfea42acc755693e8d95291997201bc6c248.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0021976"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139595" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Evaluating the reliability of different preprocessing steps to estimate graph theoretical measures in resting state fMRI data

Nathassia K. Aurich, José O. Alves Filho, Ana M. Marques da Silva, Alexandre R. Franco
<span title="2015-02-19">2015</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wrk3kouosrhcxiprcbguskdipu" style="color: black;">Frontiers in Neuroscience</a> </i> &nbsp;
In this manuscript, we have tested seven different preprocessing schemes and assessed the reliability between and reproducibility within the various strategies by means of graph theoretical measures.  ...  With resting-state functional MRI (rs-fMRI) there are a variety of post-processing methods that can be used to quantify the human brain connectome.  ...  Aurich's graduate scholarship (CAPES/OBEDUC 0898/2013; Processo no. 23038.002530/2013-93) and the 1000 Connectomes Functional Project that is part of the International Neuroimaging Datasharing Initiative  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2015.00048">doi:10.3389/fnins.2015.00048</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25745384">pmid:25745384</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4333797/">pmcid:PMC4333797</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4qhmta74dbdsfgfdgyordvbqni">fatcat:4qhmta74dbdsfgfdgyordvbqni</a> </span>
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Test–Retest Reliability of Synchrony and Metastability in Resting State fMRI

Lan Yang, Jing Wei, Ying Li, Bin Wang, Hao Guo, Yanli Yang, Jie Xiang
<span title="2021-12-31">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/5hwrtdnkjvclroyxzt4ty5ijb4" style="color: black;">Brain Sciences</a> </i> &nbsp;
In particular, by comparing the testretest reliability of different resting-state networks, we found that synchrony of different networks was basically stable, but the metastability varied considerably  ...  Among these, DMN and LIM had a relatively higher testretest reliability of metastability than other networks.  ...  On this basis, we also measure the testretest reliabilities of synchrony and metastability in the resting-state network, to discover more networks characteristic.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/brainsci12010066">doi:10.3390/brainsci12010066</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/35053813">pmid:35053813</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8773904/">pmcid:PMC8773904</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vnftkzjwf5gexijo3jga25twca">fatcat:vnftkzjwf5gexijo3jga25twca</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220503080920/https://mdpi-res.com/d_attachment/brainsci/brainsci-12-00066/article_deploy/brainsci-12-00066.pdf?version=1640963307" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/48/31/483104343afab0ebead18d594a48f3c1a5be8b42.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/brainsci12010066"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8773904" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Repeatability of graph theoretical metrics derived from resting-state functional networks in paediatric epilepsy patients

Michael J Paldino, Zili D Chu, Mary L Chapieski, Farahnaz Golriz, Wei Zhang
<span title="">2017</span> <i title="British Institute of Radiology"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/vngwqxkavfdxxnv7qnd3n2eoli" style="color: black;">British Journal of Radiology</a> </i> &nbsp;
Advances in knowledge: Our results point to the potential for graph theoretical analyses of resting-state data to provide reliable markers of network architecture in children with epilepsy.  ...  Undirected, weighted networks were constructed based on the resting-state time series using a range of processing parameters including parcellation size and graph threshold.  ...  DISCUSSION Our primary aim was to investigate the test-retest repeatability of graph theoretical metrics derived from rs-fMRI in children with epilepsy.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1259/bjr.20160656">doi:10.1259/bjr.20160656</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28406312">pmid:28406312</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5602170/">pmcid:PMC5602170</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dij2rudsmffxnl3abq3ccmuz2e">fatcat:dij2rudsmffxnl3abq3ccmuz2e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200211002533/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5602170&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d4/92/d492f3d165c43db30e7d38020a558a9ea5225c5d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1259/bjr.20160656"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5602170" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Toward Leveraging Human Connectomic Data in Large Consortia: Generalizability of fMRI-Based Brain Graphs Across Sites, Sessions, and Paradigms

Hengyi Cao, Sarah C McEwen, Jennifer K Forsyth, Dylan G Gee, Carrie E Bearden, Jean Addington, Bradley Goodyear, Kristin S Cadenhead, Heline Mirzakhanian, Barbara A Cornblatt, Ricardo E Carrión, Daniel H Mathalon (+12 others)
<span title="2018-03-07">2018</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eeg67t2wzfd3dpiicxsttg3cxi" style="color: black;">Cerebral Cortex</a> </i> &nbsp;
Our results revealed overall fair to excellent reliability for a majority of measures during both rest and tasks, in particular for those quantifying connectivity strength, network segregation and network  ...  Here, using a battery of cognitive, emotional and resting fMRI paradigms, we investigated the generalizability of functional connectomic measures across sites and sessions.  ...  Conflicts of Interest: Dr Cannon has served as a consultant for the Los Angeles County Department of Mental Health and Boehringer-Ingelheim Pharmaceuticals.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/cercor/bhy032">doi:10.1093/cercor/bhy032</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29522112">pmid:29522112</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vcfk7xb7qzarvnnodvj7r63t4i">fatcat:vcfk7xb7qzarvnnodvj7r63t4i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190223122535/http://pdfs.semanticscholar.org/4f8b/31fa06e4b454ec1f745e03ecd048df92532c.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4f/8b/4f8b31fa06e4b454ec1f745e03ecd048df92532c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/cercor/bhy032"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Resting-state brain network features associated with short-term skill learning ability in humans and the influence of N-methyl-d-aspartate receptor antagonism

Zhenxiang Zang, Lena S. Geiger, Urs Braun, Hengyi Cao, Maria Zangl, Axel Schäfer, Carolin Moessnang, Matthias Ruf, Janine Reis, Janina I. Schweiger, Luanna Dixson, Alexander Moscicki (+3 others)
<span title="2018-10-01">2018</span> <i title="MIT Press - Journals"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hjuah27335hxnos7w5tnkkihzy" style="color: black;">Network Neuroscience</a> </i> &nbsp;
In the current study, we applied a visually guided sequential pinch force learning task and graph theoretical analyses to investigate the associations between short-term motor learning ability and resting-state  ...  We further probed the test-retest reliability (n = 26) and potential effects of the N-methyl-d-aspartate (NMDA) antagonist ketamine (n = 19) in independent healthy volunteers.  ...  ACKNOWLEDGMENTS We thank Ilka Alexi, Carolin Dennewill, Tobias Gradinger, Jascha Thiem, Canan Koc, Oliver Grimm, Leila Haddad, and Mathias Kienow for research assistance.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1162/netn_a_00045">doi:10.1162/netn_a_00045</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30320294">pmid:30320294</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6175691/">pmcid:PMC6175691</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4zhpyubvefculibv5kdqts4mym">fatcat:4zhpyubvefculibv5kdqts4mym</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200429135853/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6175691&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/69/64/696491ed02a18e7d6a496d2b9cdf81b216a21cca.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1162/netn_a_00045"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mitpressjournals.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175691" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Uncovering differential identifiability in network properties of human brain functional connectomes

Meenusree Rajapandian, Enrico Amico, Kausar Abbas, Mario Ventresca, Joaquín Goñi
<span title="2020-04-06">2020</span> <i title="MIT Press - Journals"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hjuah27335hxnos7w5tnkkihzy" style="color: black;">Network Neuroscience</a> </i> &nbsp;
Results show that improving across-session reliability of FCs also improves reliability of derived network measures.  ...  a variety of fMRI tasks.  ...  Gorka Zamora-Lopez and Dr. Matthieu Gilson for useful comments.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1162/netn_a_00140">doi:10.1162/netn_a_00140</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32885122">pmid:32885122</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7462422/">pmcid:PMC7462422</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4vvps47sure7lnjlicu6tblkli">fatcat:4vvps47sure7lnjlicu6tblkli</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210303043452/https://www.mitpressjournals.org/doi/pdf/10.1162/netn_a_00140" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6b/b8/6bb869a34ea432e32a29b9fed864e13b30f8898d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1162/netn_a_00140"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mitpressjournals.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7462422" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Test-Retest Reliability of Graph Metrics in Functional Brain Networks: A Resting-State fNIRS Study

Haijing Niu, Zhen Li, Xuhong Liao, Jinhui Wang, Tengda Zhao, Ni Shu, Xiaohu Zhao, Yong He, Olaf Sporns
<span title="2013-09-09">2013</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
Here, we used resting-state fNIRS and a graph-theoretical approach to systematically address TRT reliability as it applies to various features of human brain networks, including functional connectivity  ...  However, the test-retest (TRT) reliability of the application of graph metrics to these networks remains to be elucidated.  ...  To comprehensively investigate the test-retest reliability of the graph theory-derived R-fNIRS network, we analyzed the reliability of R-fNIRS network properties from three perspectives: resting-state  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0072425">doi:10.1371/journal.pone.0072425</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24039763">pmid:24039763</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3767699/">pmcid:PMC3767699</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/khqloqwfwrg7xjw7qm2pifcqh4">fatcat:khqloqwfwrg7xjw7qm2pifcqh4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171008045529/http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0072425&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2a/9a/2a9add07e8e0f9a23b50daf35bbdd3e58d9df8be.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0072425"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3767699" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Quantifying person-level brain network functioning to facilitate clinical translation

T M Ball, A N Goldstein-Piekarski, J M Gatt, L M Williams
<span title="2017-10-17">2017</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eramt72k3vanfg544z3nw4zrsu" style="color: black;">Translational Psychiatry</a> </i> &nbsp;
Across three samples totaling 322 healthy, mostly Caucasian adults, average connectivity performed best, with good internal consistency (Cronbach's α = 0.69-0.70) and adequate eight-week test-retest reliability  ...  We therefore present normative data for average connectivity of the DMN and its sub-networks.  ...  This may include further exploration to identify the most reliable, valid, and clinically useful fMRI measures for both rest and task-evoked activity.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/tp.2017.204">doi:10.1038/tp.2017.204</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29039851">pmid:29039851</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5682602/">pmcid:PMC5682602</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rkeemd7dxzdsjhqdahxhojtdaa">fatcat:rkeemd7dxzdsjhqdahxhojtdaa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200211024814/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5682602&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d4/bb/d4bbba6c5f1ce6ee54fcf8073a2955a95ca3e060.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/tp.2017.204"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5682602" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Resting state functional connectivity of the pain matrix and default mode network in irritable bowel syndrome: a graph theoretical analysis

Michiko Kano, Cecilia Grinsvall, Qian Ran, Patrick Dupont, Joe Morishita, Tomohiko Muratsubaki, Shunji Mugikura, Huynh Giao Ly, Hans Törnblom, Maria Ljungberg, Kei Takase, Magnus Simrén (+2 others)
<span title="2020-07-03">2020</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tnqhc2x2aneavcd3gx5h7mswhm" style="color: black;">Scientific Reports</a> </i> &nbsp;
This study aims to compare resting-state functional properties of these networks between IBS patients and HCs using graph analysis in two independent cohorts.  ...  measures of psychological distress (anxiety and/or depressive symptoms) and normalized characteristic path length.  ...  First, we checked the test-retest reliability of graph measures in another dataset using the same processing pipeline within the pain matrix and DMN network.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41598-020-67048-9">doi:10.1038/s41598-020-67048-9</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32620938">pmid:32620938</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fp3ugmlbcvfe5fbdep6fg233du">fatcat:fp3ugmlbcvfe5fbdep6fg233du</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201108091143/https://www.nature.com/articles/s41598-020-67048-9.pdf?error=cookies_not_supported&amp;code=ec9e91da-4f96-4c12-879f-7baf7a84a0ce" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/19/c5/19c59a0ee2bfc93513cccd37818d2c1d660f9526.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41598-020-67048-9"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Reliable intrinsic connectivity networks: Test–retest evaluation using ICA and dual regression approach

Xi-Nian Zuo, Clare Kelly, Jonathan S. Adelstein, Donald F. Klein, F. Xavier Castellanos, Michael P. Milham
<span title="2009-11-05">2010</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
Functional connectivity analyses of resting-state fMRI data are rapidly emerging as highly efficient and powerful tools for in vivo mapping of functional networks in the brain, referred to as intrinsic  ...  The present work systematically evaluated the test-retest reliability of TC-GICA derived RSFC measures over the short-term (<45 min) and long-term (5-16 months).  ...  Biswal for helpful advice and Dr. Christian F. Beckmann for invaluable discussions on the dual regression method. Dr. Maarten Mennes helped to improve the readability of the manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2009.10.080">doi:10.1016/j.neuroimage.2009.10.080</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19896537">pmid:19896537</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2877508/">pmcid:PMC2877508</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/kwyybvdewfeyvdcdvuzmkac43a">fatcat:kwyybvdewfeyvdcdvuzmkac43a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170830015207/https://ngp.usc.edu/files/2013/06/Zuo2010_Clewett.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4d/98/4d984e3b100ff698cee40f76a0cebba32c633cea.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2009.10.080"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877508" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Riccati-regularized Precision Matrices for Neuroimaging [article]

Nicolas Honnorat, Christos Davatzikos
<span title="2016-12-11">2016</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We demonstrate their benefits for the analysis of cortical thickness map and for the extraction of functional biomarkers from resting state fMRI scans.  ...  The introduction of graph theory in neuroimaging has pro- vided invaluable tools for the study of brain connectivity.  ...  An in-depth test-retest validation was carried out by reducing the spatial dimension of the resting state fMRI (rs-fMRI) scans with Glasser et al. parcellation [8] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1612.03428v1">arXiv:1612.03428v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gu63wpm7wfeylk6kkzt36o5fbm">fatcat:gu63wpm7wfeylk6kkzt36o5fbm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200913194613/https://arxiv.org/pdf/1612.03428v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2b/56/2b56f79433018c0dbbb7f1135ab2fdb5e9df1022.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1612.03428v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Heritability analysis with repeat measurements and its application to resting-state functional connectivity

Tian Ge, Avram J. Holmes, Randy L. Buckner, Jordan W. Smoller, Mert R. Sabuncu
<span title="2017-05-08">2017</span> <i title="Proceedings of the National Academy of Sciences"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nvtuoas5pbdsllkntnhizy4f4q" style="color: black;">Proceedings of the National Academy of Sciences of the United States of America</a> </i> &nbsp;
2 J.W.S. and M.R.S. contributed equally to this work. This article contains supporting information online at www.pnas.org/lookup/suppl/  ...  Thomas Yeo for providing the 51 spatial components of the seven-network parcellation of the cortex.  ...  This work also involved the use of instrumentation supported by the NIH Shared Instrumentation Grant Program (S10RR023043 and S10RR023401).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1073/pnas.1700765114">doi:10.1073/pnas.1700765114</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28484032">pmid:28484032</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5448225/">pmcid:PMC5448225</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/p4cs6qwrrjclxb3lm7yqty2v2m">fatcat:p4cs6qwrrjclxb3lm7yqty2v2m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200310140958/https://www.pnas.org/content/pnas/114/21/5521.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/59/dd/59ddea56350ae2b15e545ffb9a50a72e6d5c9388.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1073/pnas.1700765114"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5448225" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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