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Ten Simple Rules for a Community Computational Challenge
2015
PLoS Computational Biology
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To help choose an appropriate method for a particular task, scientists often form community-based challenges for the unbiased evaluation of methods in a given field. ...
These challenges help evaluate existing and novel methods, while helping to coalesce a community and leading to new ideas and collaborations. ...
Brenner, Michal Linial, Christine Orengo, and Burkhard Rost for their service on the CAFA steering committee. ...
doi:10.1371/journal.pcbi.1004150
pmid:25906249
pmcid:PMC4408123
fatcat:vc4dv7cpxfgwhc4uoo3x7m5tp4
Ten simple rules for biologists learning to program
2018
PLoS Computational Biology
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Acknowledgments Thank you to Ed Hall, Pat Schloss, Matthew Jenior, Angela Zeigler, Jhansi Leslie, and Gregory Medlock for their feedback. ...
For specific advice, see "Ten Simple Rules for a Computational Biologist's Laboratory Notebook" [13] , "Ten Simple Rules for Reproducible Computational Research" [14] , and "Ten Simple Rules for Taking ...
] , "Ten Simple Rules for Cultivating Open Science and Collaborative R&D" [11] , and "Ten Simple Rules To Combine Teaching and Research" [12] . ...
doi:10.1371/journal.pcbi.1005871
pmid:29300745
pmcid:PMC5754048
fatcat:vkxwxsp5xzevdak5s3hdkql4rq
Ten simple rules for doing a postdoc in pharma
2021
PLoS Computational Biology
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Postdoctoral programs in the pharmaceutical and life science industry offer opportunities for personal and professional development, if you know why to join, what to expect, and how to prepare. ...
academia [2] , Ten simple rules for selecting a postdoctoral position [3] , and Ten simple rules for landing on the right job after your PhD or postdoc [4] . ...
Meanwhile, great resources are available to help people make career decisions after PhD, among others pieces from the Ten Simple Rules series, including Ten simple rules for choosing between industry and ...
doi:10.1371/journal.pcbi.1008989
pmid:34081699
pmcid:PMC8174744
fatcat:hsimlpewgzdzvlf6ygp64jy5ci
One thousand simple rules
2018
PLoS Computational Biology
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The definitive qualitative measure of success came with the "Ten Simple Rules for Writing Ten Simple Rules" [2] . ...
Anonymous, Academic faculty "Ten Simple Rules for Reproducible Computational Research, and other articles related to computational biology, programming, etc. ...
doi:10.1371/journal.pcbi.1006670
pmid:30571692
pmcid:PMC6301566
fatcat:6awkh2wyujhm3ifrh3v5itpumm
Ten Simples Rules on How to Organise a Bioinformatics Hackathon
2021
EMBnet journal
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Many novel analytic and predictive computer programmes fully optimised for manipulating human genome sequence data have been developed, whereas considerably less effort has been invested in exploring the ...
A helpful model, often used by the bioinformatics community, is the so-called hackathon. These are events when all stakeholders beyond their disciplines work together creatively to solve a problem. ...
The hackathon team members gratefully acknowledge SARA for providing computer facilities and hosting one hackathon. ...
doi:10.14806/ej.26.0.983
fatcat:w3zxsxellzcyljbhdea5xiwobm
Identifying Transformative Scientific Research
2013
2013 IEEE 13th International Conference on Data Mining
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Such a disruption is visible soon after the challenger's introduction. We define a disruption score to quantify the disruption and develop an algorithm to compute it from a large citation network. ...
This paper presents a datadriven approach where citation patterns of scientific papers are analyzed to quantify how much a potential challenger idea shifts an established paradigm. ...
Table II lists the ten top-ranked challengers identified by the method proposed in this paper and the baseline. The disruption score of challengers was computed for a ten-year period (τ = 10). ...
doi:10.1109/icdm.2013.120
dblp:conf/icdm/HuangHL13
fatcat:hej6t7mbqjervbylxuxzmrfcei
Ten Simple Rules for Developing Usable Software in Computational Biology
2017
PLoS Computational Biology
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Acknowledgments We would like to thank Thomas Lengauer, Nico Pfeifer, and Fabian Müller for their critical reading of the manuscript and insightful comments. ...
To alleviate this, several related challenges have been previously addressed in the Ten Simple Rules series, including reproducibility [1] , effectiveness [2] , and open-source development of software ...
To this end, we propose ten simple rules that, in our experience, have a considerable impact on improving usability of scientific software. ...
doi:10.1371/journal.pcbi.1005265
pmid:28056032
pmcid:PMC5215831
fatcat:mkrwobit2jfcraap4xrrpxbmt4
Ten Simple Rules for a successful remote postdoc
2020
PLoS Computational Biology
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Further, our rules can be useful for research labs generally and can help foster a more flexible and inclusive environment. ...
With planning, communication, and creativity, remote postdocs can be a fully functioning and productive member of a research lab. ...
Tonietto for their valuable feedback. KRB and CMM conceived of the concept. SBB and KEI made the figures. All authors contributed to the writing and editing of the manuscript. ...
doi:10.1371/journal.pcbi.1007809
pmid:32379759
fatcat:p6nbgxbuv5gfldl7mi2demuxvm
Ten Simple Rules for Cultivating Open Science and Collaborative RD
2013
PLoS Computational Biology
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Acknowledgments We thank Jean Arkedis, Robert Hecht, and Paul Wilson for comments on early versions of this article. ...
We suggest Ten Simple Rules for Cultivating Open Science and Collaborative R&D. We also offer eight conversational interviews exploring life experiences that led to these rules (Box 1). ...
What
Rule 8: Think Big For projects hoping to harness the power of mass collaboration, a major challenge can be attracting a large community of contributors. ...
doi:10.1371/journal.pcbi.1003244
pmid:24086123
pmcid:PMC3784487
fatcat:b6hqqv2h3jfv5d3onk3ln2z3ky
Ten simple rules for short and swift presentations
2017
PLoS Computational Biology
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For instance, as a general rule-of-thumb, talks prepared for a more general public audience should emphasize the PLOS Computational Biology | https://doi. ...
Succinct prose is thus a critical element in communicating science using these presentation formats. ...
Lortie CJ (2017) Ten simple rules for short and swift presentations. ...
doi:10.1371/journal.pcbi.1005373
pmid:28358832
pmcid:PMC5373506
fatcat:pod24v4ddvhhzp6kimboeu6vbm
Ten Simple Rules for a Successful Collaboration
2007
PLoS Computational Biology
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Acknowledgments We wish to thank Tom Cech for insightful discussions, and Chrysa Latrick, David Zappulla, Barbara Cohen, Emma Veitch, Catherine Nancarrow, and Hemai Parthasarathy for helpful suggestions ...
The authors received no specific funding for this article. Competing interests. The authors have declared that no competing interests exist. ...
As you can see, we have obeyed Rule 8. & Citation: Vicens Q, Bourne PE (2007) Ten simple rules for a successful collaboration. ...
doi:10.1371/journal.pcbi.0030044
pmid:17397252
pmcid:PMC1847992
fatcat:4suh4cztxjflbpyefl5wuurcua
Ten simple rules for making a vocabulary FAIR
2021
PLoS Computational Biology
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We present ten simple rules that support converting a legacy vocabulary—a list of terms available in a print-based glossary or in a table not accessible using web standards—into a FAIR vocabulary. ...
The rules are arranged as a stepwise recipe for creating a FAIR vocabulary based on the legacy vocabulary. ...
Acknowledgments We thank CODATA (https://codata.org) and the DDI Alliance (https://ddialliance.org/), who organised a Workshop on Cross-domain Metadata at Schloss Dagstuhl in October 2019, where this work ...
doi:10.1371/journal.pcbi.1009041
pmid:34133421
fatcat:nk543tvzjfggrijsjs7fvbkx3q
Ten Simple Rules for Writing a PLOS Ten Simple Rules Article
2014
PLoS Computational Biology
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This review article itself was inspired by a journal club meeting devoted to the Ten Simple Rules collection, and the authors would like to thank all the members of the Parkville Bioinformatics Journal ...
Acknowledgments It's unlikely the advice you are dispensing has arisen in a vacuum. Give credit. ...
If you are stumped, here are some suggestions: Ten Simple Rules for retiring when you know you should. Ten Simple Rules for winning a Nobel Prize. Ten Simple Rules for managing a scientific rivalry. ...
doi:10.1371/journal.pcbi.1003858
pmid:25340653
pmcid:PMC4207461
fatcat:ue3kcad5uzedhdg52f74oyhiye
Ten Simple Rules to Enable Multi-site Collaborations through Data Sharing
2017
PLoS Computational Biology
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Code can also be shared on Github with issue trackers for error detection. Modern life context for the ten simple rules. ...
We describe these rules and highlight several successful multi-site collaborations. Fig 1 . 1 Fig 1. Modern life context for the ten simple rules. ...
doi:10.1371/journal.pcbi.1005278
pmid:28103227
pmcid:PMC5245793
fatcat:vubx7fcbv5fafpo3wxog2lvrdi
Ten Simple Rules for a Bioinformatics Journal Club
2016
PLoS Computational Biology
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We would also like to thank Mina Stevenson and Alicia Oshlack for their feedback on the manuscript. ...
The authors would like to thank the Dr Dax Kitchen for their coffee and great service (putting up with us). ...
Ten Simple Rules collection itself! ...
doi:10.1371/journal.pcbi.1004526
pmid:26820645
pmcid:PMC4731213
fatcat:eaqpabppordc7e3bykwwexvtpy
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