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TREC 2005 Genomics Track at I2R

Nie Yu, Lingpeng Yang, Dong-Hong Ji, Jie Zhang, Jian Su, Xiaofeng Yang, Soon-Heng Tan, Juan Xiao, Guodong Zhou
2005 Text Retrieval Conference  
This paper describes the methods we used for the Ad Hoc task of TREC Genomics Track. Synonym dictionary for genes and pseudo relevance feedback are used to expand queries.  ...  Ad Hoc Retrieval Task In Ad Hoc task of TREC 2005 Genomics Track, topics are developed from generic templates to provide systems with better defined queries for finding genomics information.  ...  Relevance judgments are done by TREC organizer using the similar pooling method with TREC 2004 Genomics Track.  ... 
dblp:conf/trec/YuYJJSYTXZ05 fatcat:7pdivotdznab7cwhev3qrozlxa

I2R at TREC 2006 Genomics Track

Nie Yu, Lingpeng Yang, Jie Zhang, Jian Su, Dong-Hong Ji
2006 Text Retrieval Conference  
This paper describes the method we used for the Genomics Track of TREC 2006. BM25 model is implemented to retrieve relevant documents.  ...  There are 28 official topics, with seven topics from each generic topic template (GTT) of Genomics Track 2005.  ...  In this year, the genomics track of TREC developed a new single task that focuses on retrieval of passages with linkage to the source document.  ... 
dblp:conf/trec/YuYJSJ06 fatcat:jf3yyihubrbnfhpv5pp4zhibwi

Advancing Biomedical Image Retrieval: Development and Analysis of a Test Collection

W. R. Hersh, H. Muller, J. R. Jensen, J. Yang, P. N. Gorman, P. Ruch
2006 JAMIA Journal of the American Medical Informatics Association  
The primary performance measure of mean average precision (MAP) was not necessarily associated with other measures, including those possibly more pertinent to real users, such as precision at 10 or 30  ...  A number of test collections have been developed for document retrieval in the clinical domain. 14, 15 More recently, focus has shifted to the biomedical research domain in the TREC Genomics Track.  ...  Tables 1 and 2 describe the collections used in the 2005 task.  ... 
doi:10.1197/jamia.m2082 pmid:16799124 pmcid:PMC1561788 fatcat:4cjszhblkzbufj6eekdfiwk5du