Filters








262 Hits in 2.3 sec

TREC 2004 Genomics Track Overview

William R. Hersh, Ravi Teja Bhupatiraju, L. Ross, Aaron M. Cohen, Dale Kraemer, Phoebe Johnson
2004 Text Retrieval Conference  
Acknowledgements The TREC 2004 Genomics Track was supported by NSF Grant ITR-0325160. The track also appreciates the help of Ellen Voorhees and NIST.  ...  Overview of Track In TREC 2004, the Genomics Track had two tasks, the second of which was subdivided into subtasks.  ...  The TREC 2004 Genomics Track consisted of two tasks.  ... 
dblp:conf/trec/HershBRCKJ04 fatcat:vtgtfosbofdqlk7yfdhlt3imma

TREC genomics special issue overview

William Hersh, Ellen Voorhees
2008 Information retrieval (Boston)  
Acknowledgements The TREC Genomics Track was supported by NSF Grant ITR-0325160. The track also appreciated the help of Lori Buckland and others at NIST for help in its administration.  ...  We were also very grateful to the National Library of Medicine, Highwire Press, and the Mouse Genome Informatics Project for providing data for use in the track.  ...  The ad hoc retrieval task ran in the TREC 2004 (Hersh et al. 2004 , 2006a ) and TREC 2005 (Hersh et al. 2005 ) Genomics Tracks.  ... 
doi:10.1007/s10791-008-9076-6 fatcat:e36xnnbro5eqvkmmm7x4rxj2mu

The BioLink SIG Workshop at ISMB2004

Lynette Hirschman, Christian Blaschke, Alfonso Valencia
2005 Comparative and Functional Genomics  
We would also like to thank the invited speakers, whose workshop abstracts appear in this overview.  ...  The website also contains an overview paper from the 2003 track as well as the protocol for the 2004 track.  ...  Background on the motivation and evolution of the track can be found on the track website (http://medir.ohsu.edu/∼genomics/).  ... 
doi:10.1002/cfg.455 pmid:18629301 pmcid:PMC2448605 fatcat:lfl62kerhbdvblziets4jxihqa

Overview of the TREC 2006

Ellen M. Voorhees
2006 Text Retrieval Conference  
The track summaries in section 3 are based on the track overview papers authored by the coordinators.  ...  Acknowledgements Special thanks to the track coordinators who make the variety of different tasks addressed in TREC possible.  ...  The details of the evaluation methodology used in a particular track are described in the track's overview paper. TREC 2006 Tracks TREC's track structure was begun in TREC-3 (1994).  ... 
dblp:conf/trec/Voorhees06 fatcat:5olfha4lxvcqbahxz7rl6bldha

Overview of TREC 2007

Ellen M. Voorhees
2007 Text Retrieval Conference  
Acknowledgements The track summaries in section 3 are based on the track overview papers authored by the track coordinators.  ...  My thanks to the coordinators who make the variety of different tasks addressed in TREC possible.  ...  The genomics track The goal of genomics track is to provide a forum for evaluation of information access systems in the genomics domain.  ... 
dblp:conf/trec/Voorhees07 fatcat:amjy53u3rfby7nt5ay4cq2hvty

DUTIR at TREC 2006: Genomics and Enterprise Tracks

Zhihao Yang, Hongfei Lin, Yanpeng Li, Linhong Xu, Yu Pan, Baoyan Liu
2006 Text Retrieval Conference  
This paper describes the techniques we applied for the two TREC 2006 tracks, i.e., Genomics and Enterprise track.  ...  For the Genomics Track, we used a Rocchio relevance feedback method to expand the terms and then performed passage retrieval by building dual index and using half overlapped windows passages.  ...  Conclusion In TREC 2006 we took part in Genomics and Enterprise tracks.  ... 
dblp:conf/trec/YangLLXPL06 fatcat:jth4aem23rbi3pnczp5g24yj6u

Page 103 of Computational Linguistics Vol. 33, Issue 1 [page]

2007 Computational Linguistics  
Overview of the TREC 2003 question answering track. In Proceedings of the Twelfth Text REtrieval Conference (TREC 2003), pages 54-68, Gaithersburg, MD. Voorhees, Ellen M. and Dawn M. Tice. 1999.  ...  Rinaldi, Fabio, James Dowdall, Gerold Schneider, and Andreas Persidis. 2004. Answering questions in the genomics domain.  ... 

Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols

Fabien Campagne
2008 BMC Bioinformatics  
We compare the performance obtained with these evaluation protocols to results obtained by reusing the relevance judgments produced in the 2004 and 2005 TREC Genomics Track and observe significant correlations  ...  The TREC Genomics Track has recently been introduced to measure the performance of information retrieval for biomedical applications.  ...  (genomics tracks 2004 and 2005 ).  ... 
doi:10.1186/1471-2105-9-132 pmid:18312673 pmcid:PMC2292696 fatcat:exdq6lijnzen7almovdrp2g2ji

WIDIT in TREC 2004 Genomics, Hard, Robust and Web Tracks

Kiduk Yang, Ning Yu, Adam Wead, Gavin La Rowe, Yu-Hsiu Li, Christopher Friend, Yoon Lee
2004 Text Retrieval Conference  
, Robust, and Web tracks in TREC-2004 .  ...  Genomics track The Genomics track investigated how exploiting domain-specific information improves retrieval effectiveness.  ... 
dblp:conf/trec/YangYWRLFL04 fatcat:74oxu6cxtnaqldkfcd7lq7if4u

Tackling class imbalance and data scarcity in literature-based gene function annotation

Mathieu Blondel, Kazuhiro Seki, Kuniaki Uehara
2011 Proceedings of the 34th international ACM SIGIR conference on Research and development in Information - SIGIR '11  
From experiments on the TREC Genomics Track data, our approach achieves better F1-score than two state-of-the-art approaches based on string-matching and cross-species information.  ...  To alleviate the burden, TREC 2004 Genomics Track and BioCreative targeted automatic GO domain/term annotation.  ...  EXPERIMENTS For evaluation, we used the test dataset provided for the TREC 2004 Genomics Track and supplemented it by GO term information. The resulting dataset consists of 863 test instances.  ... 
doi:10.1145/2009916.2010080 dblp:conf/sigir/BlondelSU11 fatcat:rciumsw23fd5rauyoarkh7moai

General-purpose search techniques for genomic text

Abhijit Chattaraj, Hugh E Williams, Adam Cannane
2004 Genome Informatics Series  
In this paper, we investigate and propose general-purpose search techniques for genomic text.  ...  We conclude by recommending techniques that can be considered for most genomic search tasks.  ...  The genomic track is a recent addition, and is being conducted for the second time in 2004.  ... 
pmid:15706490 fatcat:ga2cqy5cs5eidaw2xqmgpifeji

University of Lethbridge's Participation in TREC 2004 QA Track

Yllias Chali, Stephen Dubien
2004 Text Retrieval Conference  
We participated in the question answering track. The questions in the TREC-2004 QA track are clustered by target, which is the topic of the question.  ...  Conclusion The TREC-2004 question answering track has been a learning experience for us. Preparation for next year will include many improvements to our system.  ... 
dblp:conf/trec/ChaliD04 fatcat:kxr65cc2rncjjhwecdxeyhdzyi

General-Purpose Search Techniques for Genomic Text

Abhijit Chattaraj, Hugh E. Williams, Adam Cannane
2004 Genome Informatics Series  
In this paper, we investigate and propose general-purpose search techniques for genomic text.  ...  We conclude by recommending techniques that can be considered for most genomic search tasks.  ...  The genomic track is a recent addition, and is being conducted for the second time in 2004.  ... 
doi:10.11234/gi1990.15.2_42 fatcat:3hcbnz5bmva7ff6fhxqougvnum

DalTREC 2004: Question Answering Using Regular Expression Rewriting

Vlado Keselj, Anthony Cox
2004 Text Retrieval Conference  
This is the first year that the Dalhousie University participated in TREC. We submitted three runs for the QA track.  ...  Acknowledgments We would like to thank Charlie Clarke for providing MultiText results for the TREC questions from the AQUAINT data set and his Web collection.  ...  Introduction 2004 is the first year that the Dalhousie University participated in TREC.  ... 
dblp:conf/trec/KeseljC04 fatcat:2qejndar6nf6danhzhr4cinqkq

Using Profile Matching and Text Categorization for Answer Extraction in TREC Genomics

Haiqing Zheng, Chen Lin, Lishen Huang, Jun Xu, Jiaqian Zheng, Qi Sun, Junyu Niu
2006 Text Retrieval Conference  
TREC'06 genomics track was focusing on text mining and passage retrieval. WIM lab participated in this year's TREC genomics track.  ...  Introduction TREC genomics track is always focusing on the text processing in biomedical fields.  ...  of the topics from the 2004 track and other known biologist information needs.  ... 
dblp:conf/trec/ZhengLHXZSN06 fatcat:z55iybyotbbttgjwddwfd2kdoy
« Previous Showing results 1 — 15 out of 262 results