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TE-Tracker: systematic identification of transposition events through whole-genome resequencing

Arthur Gilly, Mathilde Etcheverry, Mohammed-Amin Madoui, Julie Guy, Leandro Quadrana, Adriana Alberti, Antoine Martin, Tony Heitkam, Stefan Engelen, Karine Labadie, Jeremie Le Pen, Patrick Wincker (+2 others)
<span title="2014-11-19">2014</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
Conclusions: We show that TE-Tracker accurately detects both the source and destination of novel transposition events in re-sequenced genomes.  ...  We use TE-Tracker to provide a comprehensive view of transposition events induced by loss of DNA methylation in Arabidopsis. TE-Tracker is freely available at http://www.genoscope.cns.fr/TE-Tracker.  ...  Here, we present TE-Tracker, a new method dedicated to the systematic and robust identification of newly mobilized TEs in genomes resequenced using Illumina paired-end fragments.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12859-014-0377-z">doi:10.1186/s12859-014-0377-z</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25408240">pmid:25408240</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4279814/">pmcid:PMC4279814</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lh3geoart5gffp4u5krar3tlzq">fatcat:lh3geoart5gffp4u5krar3tlzq</a> </span>
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