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TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB

C. Yamasaki, H. Kawashima, F. Todokoro, Y. Imamizu, M. Ogawa, M. Tanino, T. Itoh, T. Gojobori, T. Imanishi
2006 Nucleic Acids Research  
Transcriptome Auto-annotation Conducting Tool (TACT) is a newly developed web-based automated tool for conducting functional annotation of transcripts by the integration of sequence similarity searches  ...  in H-InvDB.  ...  The authors acknowledge all the members of the H-Invitational consortium, especially the staffs of JBIRC and DDBJ for construction of H-InvDB.  ... 
doi:10.1093/nar/gkl283 pmid:16845023 pmcid:PMC1538819 fatcat:7xocpb6dmjccvbbjxxygk7pid4

H-InvDB: A Comprehensive Annotation Resource For Human Transcriptome

Chisato Yamasaki, Chisato Yamasaki, Jun-ichi Takeda, Takuya Habara, Makoto Ogawa, Akiko Noda, Ryuichi Sakate, Katsuhiko Murakami, Tadashi Imanishi, Takashi Gojobori
2010 Nature Precedings  
The latest release of H-InvDB (release 7.5) provides annotation for 242,813 human transcripts in 44,806 human gene clusters based on human full-length cDNAs, mRNAs and the reference human genome sequences  ...  /hinvNaviTop.jsp) and "H-InvDB Enrichment Analysis Tool (HEAT)" , a data mining tool for automatically identifying features specific to a given human gene set (http://hinv.jp/HEAT/ ).  ...  TACT :Transcriptome Auto-annotation Conducting Tool A web-based automated prediction tool of functional annotation that was newly developed by integrating ORF prediction, similarity searches and motif  ... 
doi:10.1038/npre.2010.5272.1 fatcat:nog5ihdzzbfcfgotrucnv45awa

H-InvDB: A Comprehensive Annotation Resource For Human Transcriptome

Chisato Yamasaki, Chisato Yamasaki, Jun-ichi Takeda, Takuya Habara, Makoto Ogawa, Akiko Noda, Ryuichi Sakate, Katsuhiko Murakami, Tadashi Imanishi, Takashi Gojobori
2010 Nature Precedings  
The latest release of H-InvDB (release 7.5) provides annotation for 242,813 human transcripts in 44,806 human gene clusters based on human full-length cDNAs, mRNAs and the reference human genome sequences  ...  /hinvNaviTop.jsp) and "H-InvDB Enrichment Analysis Tool (HEAT)" , a data mining tool for automatically identifying features specific to a given human gene set (http://hinv.jp/HEAT/ ).  ...  TACT :Transcriptome Auto-annotation Conducting Tool A web-based automated prediction tool of functional annotation that was newly developed by integrating ORF prediction, similarity searches and motif  ... 
doi:10.1038/npre.2010.5272 fatcat:wcqjysxtbvchxm2ukgzobdnjoq

H-InvDB: A Comprehensive Annotation Resource For Human Transcriptome

Chisato Yamasaki, Chisato Yamasaki, Jun-ichi Takeda, Takuya Habara, Makoto Ogawa, Akiko Noda, Ryuichi Sakate, Katsuhiko Murakami, Tadashi Imanishi, Takashi Gojobori
2010 Nature Precedings  
The latest release of H-InvDB (release 7.5) provides annotation for 242,813 human transcripts in 44,806 human gene clusters based on human full-length cDNAs, mRNAs and the reference human genome sequences  ...  /hinvNaviTop.jsp) and "H-InvDB Enrichment Analysis Tool (HEAT)" , a data mining tool for automatically identifying features specific to a given human gene set (http://hinv.jp/HEAT/ ).  ...  TACT :Transcriptome Auto-annotation Conducting Tool A web-based automated prediction tool of functional annotation that was newly developed by integrating ORF prediction, similarity searches and motif  ... 
doi:10.1038/npre.2010.5271 fatcat:natwwhqmqrb6zkpbzq4j3vzr2y

H-InvDB: A Comprehensive Annotation Resource For Human Transcriptome

Chisato Yamasaki, Chisato Yamasaki, Jun-ichi Takeda, Takuya Habara, Makoto Ogawa, Akiko Noda, Ryuichi Sakate, Katsuhiko Murakami, Tadashi Imanishi, Takashi Gojobori
2010 Nature Precedings  
The latest release of H-InvDB (release 7.5) provides annotation for 242,813 human transcripts in 44,806 human gene clusters based on human full-length cDNAs, mRNAs and the reference human genome sequences  ...  /hinvNaviTop.jsp) and "H-InvDB Enrichment Analysis Tool (HEAT)" , a data mining tool for automatically identifying features specific to a given human gene set (http://hinv.jp/HEAT/ ).  ...  TACT :Transcriptome Auto-annotation Conducting Tool A web-based automated prediction tool of functional annotation that was newly developed by integrating ORF prediction, similarity searches and motif  ... 
doi:10.1038/npre.2010.5271.1 fatcat:dss4ef2fbreqjpx2irahhd4djy

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

Marc A Marti-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali
2007 BMC Bioinformatics  
TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB TACT is freely available at http://www.jbirc.aist.go.jp/tact/.  ...  Transcriptome Auto-annotation Conducting Tool (TACT) is a newly developed web-based automated tool for conducting functional annotation of transcripts by the integration of sequence similarity searches  ... 
doi:10.1186/1471-2105-8-s4-s4 pmid:17570147 pmcid:PMC1892083 fatcat:o5p5c46emzbhxlmq27vqibskdi