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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Lisa Harper, Jacqueline Campbell, Ethalinda K S Cannon, Sook Jung, Monica Poelchau, Ramona Walls, Carson Andorf, Elizabeth Arnaud, Tanya Z Berardini, Clayton Birkett, Steve Cannon, James Carson (+40 others)
2018 Database: The Journal of Biological Databases and Curation  
with regard to data curation.  ...  As a step toward this goal, we present the current state of biocuration, ontologies, metadata and persistence, database platforms, programmatic (machine) access to data, communication and sustainability  ...  Acknowledgements We acknowledge with thanks The National Science Foundation Plant Genome Research Program Award # 1444573 for funding the AgBioData Workshop and development and hosting of the AgBio-Data  ... 
doi:10.1093/database/bay088 pmid:30239679 pmcid:PMC6146126 fatcat:spcxmd66qrgdnos4larqfvf6ai

From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives

Sebastian Raubach, Benjamin Kilian, Kate Dreher, Ahmed Amri, Filippo M. Bassi, Ousmane Boukar, Douglas Cook, Alan Cruickshank, Christian Fatokun, Noureddine El Haddad, Alan Humphries, David Jordan (+23 others)
2020 Crop science  
Being able to access and share this data in standard formats is essential.  ...  Management and distribution of experimental data from prebreeding projects is important to ensure uptake of germplasm into breeding and research programs.  ...  Ensuring that new tools and utilities, as much as possible, can be viewed on mobile devices is important for their uptake and use in the research community.  ... 
doi:10.1002/csc2.20248 fatcat:ptp7d2ekjjg4bkxdnw2a6tru54

European maize genomes unveil pan-genomic dynamics of repeats and genes [article]

Klaus F X Mayer
2019 bioRxiv   pre-print
The high quality genome sequences of the flint pool are a crucial complement to the maize pan-genome and provide an important tool to study maize improvement at a genome scale and to enhance modern hybrid  ...  The exceptional diversity of maize (Zea mays) is the backbone of modern heterotic patterns and hybrid breeding.  ...  Acknowledgements We thank Nina Opitz (University of Bonn) for helping to collect maize tissue for RNA-seq.  ... 
doi:10.1101/766444 fatcat:avgsrrzh6zaivlo2wshiz4jvgm

Germplasm Acquisition and Distribution by CGIAR Genebanks

Michael Halewood, Nelissa Jamora, Isabel Lopez Noriega, Noelle L. Anglin, Peter Wenzl, Thomas Payne, Marie-Noelle Ndjiondjop, Luigi Guarino, P. Lava Kumar, Mariana Yazbek, Alice Muchugi, Vania Azevedo (+6 others)
2020 Plants  
The international collections of plant genetic resources for food and agriculture (PGRFA) hosted by 11 CGIAR Centers are important components of the United Nations Food and Agriculture Organization's global  ...  They also play an important supportive role in realizing Target 2.5 of the Sustainable Development Goals.  ...  for their needs.  ... 
doi:10.3390/plants9101296 pmid:33019539 pmcid:PMC7601315 fatcat:7xsnnwm6zrd3fixsyte32yflb4

Summaries of National Science Foundation-Sponsored Arabidopsis 2010 Projects and National Science Foundation-Sponsored Plant Genome Projects That Are Generating Arabidopsis Resources for the Community

F. M. Ausubel
2002 Plant Physiology  
No crosses or pedigrees are needed.  ...  Combined together, these results should serve to elucidate this model plant's biochemical responses to a variety of stress conditions and provide genomic technology tools needed for assessment of the diverse  ...  , homeostasis, and development (Vierstra, 1995) .  ... 
doi:10.1104/pp.900034 fatcat:uqugi42ma5hk5fx4mge7upq5ui

Determinants of Gender Division in Agricultural Works and Agrobiodiversity Management in Nepal

Subodh Khanal, Asmita Ghimire, Aastha Acharya, Anisha Sapkota, Gokarna Adhikari
2021 Agrobiodiversity & Agroecology  
There is an urgent need in improving the women's role and overall management of the agricultural landscape.  ...  The male domination in male-headed households were significantly higher for applying fertilizers, weeding, irrigation, and pest control.  ...  Lavinia Udrea, Gabriela Teodorescu, Sînziana Venera Morărița, Ivona David Acknowledgments We want to express our gratitude to those sheep breeders in Romania who welcomed the researchers on their farm  ... 
doi:10.33002/aa010102 fatcat:lvfjz5rtijc7zmeqq7ymtob7xm

Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations

Bert C. Y. Collard, Casiana M. Vera Cruz, Kenneth L. McNally, Parminder S. Virk, David J. Mackill
2008 International Journal of Plant Genomics  
This information—coupled with the development of new genotyping methodologies and platforms, and the development of bioinformatics databases and software tools—provides even more exciting opportunities  ...  We also identify critical research areas to "bridge the application gap" between QTL identification and applied breeding that need to be addressed to realize the full potential of MAS, and propose ideas  ...  Bernardo, and J. H. Chin for their intellectual and technical input for developing some of the technology platforms, and B. Hardy, science editor, IRRI, for editing the manuscript.  ... 
doi:10.1155/2008/524847 pmid:18528527 pmcid:PMC2408710 fatcat:wmjcl5ancjalbevcxahazklw5u

Breeding Climate-Resilient Bananas [chapter]

Allan Brown, Sebastien C. Carpentier, Rony Swennen
2020 Genomic Designing of Climate-Smart Fruit Crops  
Acknowledgements This study has been supported by Grants Nº 19308/PI/14 and Nº 19879/GERM/15 of the Seneca Foundation of the Region of Murcia and the Apricot Breeding project Converse (1987) , Tzanetakis  ...  (2010) , Petrzik et al. (1998), Thompson and Jelkman (2003) , , Tzanetakis et al. (2007) , Yoshikawa et al. (1986) , Yoshikawa and Inouye (1988) , Ratti et al. (2006) Nematode Jones and Wood  ...  For instance, the Technology Portfolio v.1.0 is an online tool allowing breeders to find suitable service providers for their genetic screening needs.  ... 
doi:10.1007/978-3-319-97946-5_4 fatcat:cqzcfw6fnfcjtbnsw2bchzkx3q

E-Compendium of invited lectures and abstracts of National Online Training Programme on Conservation, Management and Utilization of Horticultural Genetic Resources for Livelihood and Nutritional Security [article]

P. E. Rajashekaran, Rajiv Kumar, Sridhar Gutam, M. R. Rohini, Linta Vincent, P.L. Anushma
2021 Zenodo  
E Compendium of invited lectures and abstracts of the National Online Training Programme on "Conservation, Management and Utilization of Horticultural Genetic Resources for Livelihood and Nutritional Security  ...  " held during November, 22-26, 2021 organized by ICAR-IIHR, Bengaluru in association with the Society for Promotion of Horticulture, Bengaluru.  ...  We need a diverse team of experts to set attainable goals, develop plans and execute plans.  ... 
doi:10.5281/zenodo.5786650 fatcat:4cmokecrbndchovnvrl6rjtsmu

Quinoa Phenotyping Methodologies: An International Consensus

Clara S. Stanschewski, Elodie Rey, Gabriele Fiene, Evan B. Craine, Gordon Wellman, Vanessa J. Melino, Dilan S. R. Patiranage, Kasper Johansen, Sandra M. Schmöckel, Daniel Bertero, Helena Oakey, Carla Colque-Little (+16 others)
2021 Plants  
Due to the phenotypic plasticity of quinoa, varieties need to be assessed across years and multiple locations.  ...  To improve comparability among field trials across the globe and to facilitate collaborations, components of the trials need to be kept consistent, including the type and methods of data collected.  ...  Acknowledgments: We thank Briony Hughes for the illustrations for plot population homogeneity, growth habit, stem angle, panicle axis angle, and panicle shape (Supplementary File S1: Phenotyping cards)  ... 
doi:10.3390/plants10091759 pmid:34579292 pmcid:PMC8472428 fatcat:va3eac375ze4rn3rpf3bw27cma

Selection of Rye (Secale cereale L.) for Powdery Mildew and Leaf Rust Resistance Through Phenotyping, Target Sequencing, and Association Genetics

N.M. Vendelbo, Mogens Hovmøller, Annemarie Fejer Justesen, Ahmed Jahoor, Jihad Orabi
2021 Zenodo  
Chris Khadgi Sørensen at the Institute of Agroecology Aarhus University (Flakkebjerg, Denmark) for their intellectual input for the study.  ...  Acknowledgments: We would like to thank laboratory technician Hanne Svenstrup at Nordic Seed A/S (Dyngby, Denmark) for contribution to the genotypic data collection and Anette Deterding and Marlene Walbrodt  ...  The collective analysis of the germplasm would, therefore, lead to a further decrease in frequency of the individual R genes and QTLs, reducing their effect and phenotypic variation explained needed for  ... 
doi:10.5281/zenodo.5820211 fatcat:mg5v7skd5jggpe7bhephu2c2nq

Program of the 89th Annual Meeting of the American Association of Physical Anthropologists

2020 American Journal of Physical Anthropology  
We conclude that two of the main factors underlying GC variation in wild hamadryas baboons are age and female reproductive state, highlighting the need to control for such factors when using GCs as a proxy  ...  When preferred foods are unavailable, primates must forage for alternative resources that enable them to meet their nutritional and energetic requirements.  ...  Foundation (1826656) The developmental basis for variation in the human shoulder Kinetics of stone tool production in novice and expert toolmakers  ... 
doi:10.1002/ajpa.24023 pmid:32058585 fatcat:gulriykcvbgdbikcya2xflv73a

Local Arrangements Committee

1986 INTELEC '86 - International Telecommunications Energy Conference  
Ithaca College. 1:00 pm Experimental field study of handedness in wild tufted (Cebus nigritus) and white-faced (Cebus capucinus) capuchins: Evidence for individual and species differences.  ...  Primate Behavior and Ecology. Contributed Papers. Ballrooms A/B. Chair: LISA M. PACHIULLI.  ...  The survey results underscore the extraordinary diversity of Island Melanesian populations from one language group to another, and from island to island.  ... 
doi:10.1109/intlec.1986.4794391 fatcat:b52eylvwe5bmfkjziuzkjh4m24

Local Arrangements Committee

2007 First International Symposium on Empirical Software Engineering and Measurement (ESEM 2007)  
Ithaca College. 1:00 pm Experimental field study of handedness in wild tufted (Cebus nigritus) and white-faced (Cebus capucinus) capuchins: Evidence for individual and species differences.  ...  Primate Behavior and Ecology. Contributed Papers. Ballrooms A/B. Chair: LISA M. PACHIULLI.  ...  The survey results underscore the extraordinary diversity of Island Melanesian populations from one language group to another, and from island to island.  ... 
doi:10.1109/esem.2007.93 fatcat:6mo2gnwg6vf6hok7afw6ovdkpq

Genomics of plant abiotic stress tolerance [chapter]

Dong-ha Oh, Maheshi Dassanayake, Hyewon Hong, Suja George, Seol Ki Paeng, Anna Kropornika, Ray A. Bressan, Sang Yeol Lee, Dae-Jin Yun, Hans J. Bohnert
2014 Plant Abiotic Stress  
Limit of Liability/Disclaimer of Warranty: While the publisher and author(s) have used their best efforts in preparing this book, they make no representations or warranties with respect to the accuracy  ...  Designations used by companies to distinguish their products are often claimed as trademarks.  ...  Acknowledgements Work in the Verslues laboratory is supported by the Academia Sinica and National Science Council of Taiwan.  ... 
doi:10.1002/9781118764374.ch9 fatcat:rjsroboo2vgc7hyja7s5tporhq
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