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Incentivising use of structured language in biological descriptions: Author-driven phenotype data and ontology production

Hong Cui, James A Macklin, Joel Sachs, Anton Reznicek, Julian Starr, Bruce Ford, Lyubomir Penev, Hsin-Liang Chen
<span title="2018-11-07">2018</span> <i title="Pensoft Publishers"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sbmgynpwvrgmziszny3vrtfn6a" style="color: black;">Biodiversity Data Journal</a> </i> &nbsp;
Phenotypes are used for a multitude of purposes such as defining species, reconstructing phylogenies, diagnosing diseases or improving crop and animal productivity, but most of this phenotypic data is  ...  We argue that this manual curation approach is not a sustainable solution to produce computable phenotypic data for three reasons: 1) it does not scale to all of biodiversity; 2) it does not stop the publication  ...  Data quality: improve the semantic clarity of new phenotype descriptions to dramatically reduce the scope of the subsequent ontologisation effort, 2.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3897/bdj.6.e29616">doi:10.3897/bdj.6.e29616</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30473620">pmid:30473620</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6235995/">pmcid:PMC6235995</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pgutctogyneidpdweh4dngulze">fatcat:pgutctogyneidpdweh4dngulze</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190429194635/https://bdj.pensoft.net/lib/ajax_srv/generate_pdf.php?document_id=29616&amp;readonly_preview=1&amp;file_id=0" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8a/e6/8ae6c5d580c125c0f1e970dc0b1c369bc3fe0c7e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3897/bdj.6.e29616"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6235995" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A Deep Learning Semantic Segmentation-Based Approach for Field-Level Sorghum Panicle Counting

Malambo, Popescu, Ku, Rooney, Zhou, Moore
<span title="2019-12-08">2019</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kay2tsbijbawliu45dnhvyvgsq" style="color: black;">Remote Sensing</a> </i> &nbsp;
Small unmanned aerial systems (UAS) have emerged as high-throughput platforms for the collection of high-resolution image data over large crop fields to support precision agriculture and plant breeding  ...  This study developed and applied an image analysis approach based on a SegNet deep learning semantic segmentation model to estimate sorghum panicles counts, which are critical phenotypic data in sorghum  ...  Acknowledgments: The authors would like to thank Texas A&M AgriLife Research for spearheading the Unmanned Aerial Systems Project for Precision Agriculture and High Throughput Field Phenotyping.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/rs11242939">doi:10.3390/rs11242939</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/i4qgcmdzevewhekpuk3l4yizve">fatcat:i4qgcmdzevewhekpuk3l4yizve</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191210023516/https://res.mdpi.com/d_attachment/remotesensing/remotesensing-11-02939/article_deploy/remotesensing-11-02939.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6c/3b/6c3be594cafaa0b4cdfc46ac4c646eea5e105f7a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/rs11242939"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

Plant Phenotyping: Past, Present, and Future

Roland Pieruschka, Uli Schurr
<span title="2019-03-26">2019</span> <i title="American Association for the Advancement of Science (AAAS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/45zzn4bvl5cd5ptvizrfz6emi4" style="color: black;">Plant Phenomics</a> </i> &nbsp;
We sketch the technological advancement that laid the foundation for the development of phenotyping centers and evaluate the upcoming challenges for further advancement of plant phenotyping specifically  ...  with respect to standardization of data acquisition and reusability.  ...  semantics enabling automated analysis of the growing amounts of data.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.34133/2019/7507131">doi:10.34133/2019/7507131</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33313536">pmid:33313536</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7718630/">pmcid:PMC7718630</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wiewn74iefcsvn77xclk2xoeny">fatcat:wiewn74iefcsvn77xclk2xoeny</a> </span>
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The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Richard Bruskiewich, Martin Senger, Guy Davenport, Manuel Ruiz, Mathieu Rouard, Tom Hazekamp, Masaru Takeya, Koji Doi, Kouji Satoh, Marcos Costa, Reinhard Simon, Jayashree Balaji (+45 others)
<span title="">2008</span> <i title="Hindawi Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6eem6zxfjvcardcgv2tqc6ywoe" style="color: black;">International Journal of Plant Genomics</a> </i> &nbsp;
/-source) databases and software tools into a workbench to facilitate biodiversity analysis, comparative analysis of crop genomic data, and plant breeding decision making.  ...  service and registry technologies to identify, share, and integrate information across diverse, globally dispersed data sources, as well as to access high-performance computational (HPC) facilities for  ...  For BioMOBY, data types were designed using GCP domain model semantics.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2008/369601">doi:10.1155/2008/369601</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18483570">pmid:18483570</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2375972/">pmcid:PMC2375972</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/eulazhshd5f3ljbgonrbkn3y3i">fatcat:eulazhshd5f3ljbgonrbkn3y3i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201103131437/http://agritrop.cirad.fr/546501/1/document_546501.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/96/f8/96f8488795c5ae306993ba8e455a8c68593b816a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2008/369601"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> hindawi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2375972" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Comprehensive data infrastructure for plant bioinformatics

Chris Jordan, Dan Stanzione, Doreen Ware, Jerry Lu, Christos Noutsos
<span title="">2010</span> <i title="IEEE"> 2010 IEEE International Conference On Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS) </i> &nbsp;
The second of these grand challenges is the Genotype-to-Phenotype project, which seeks to provide tools, in the form of a web-based Discovery Environment, for understanding the developmental process from  ...  Handling the large quantities of data involved in high-throughput sequencing and other experimental sources of bioinformatics data requires a robust infrastructure for storing and reusing large data objects  ...  ACKNOWLEDGMENT The authors would like to thank the National Science Foundation for supporting the iPlant Collaborative.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/clusterwksp.2010.5613093">doi:10.1109/clusterwksp.2010.5613093</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/u6vwfeqeg5c5pobrsnasnw3uae">fatcat:u6vwfeqeg5c5pobrsnasnw3uae</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151021041005/http://repository.cshl.edu/15442/1/Comprehensive_Data_Infrastructure_for_Plant_Bioinformatics.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/10/99/1099ef2dbe2fc1c1631fcfb68d7dc7b310189522.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/clusterwksp.2010.5613093"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

GenoPhenoEnvo Governance and Operations Manual

Monica C Munoz-Torres, Ryan P Bartelme, Michael Behrisch, Emily J Cain, Remco Chang, Ishita Debnath, Bryan Heidorn, Pankaj Jaiswal, David S LeBauer, Ab Mosca, Arun Ross, Tyson L Swetnam (+1 others)
<span title="2020-05-22">2020</span> <i title="Zenodo"> Zenodo </i> &nbsp;
This Governance and Operations Manual (GOM) defines standard operating procedures and various policies created to clarify, support, and further the goals of the Genomics, Phenotypes, and Environment (GenoPhenoEnvo  ...  Acknowledgements This code of conduct is based on the Open Code of Conduct from the TODO Group and on the Code of Conduct from the Galaxy Community Conference 2019 .  ...  END OF GENOPHENOENVO GOVERNANCE DOCUMENT ========================================================  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3839119">doi:10.5281/zenodo.3839119</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2mylikzrojawjbzgmj3sms2wli">fatcat:2mylikzrojawjbzgmj3sms2wli</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200523041945/https://zenodo.org/record/3839120/files/GenoPhenoEnvo%20Governance%20-%20SUBMITTED%20-%2020200521.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0f/37/0f37a9d55a7cbebbcab658d5fc913ec369f2e8e2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3839119"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base

Alejandro Rodríguez-Iglesias, Alejandro Rodríguez-González, Alistair G. Irvine, Ane Sesma, Martin Urban, Kim E. Hammond-Kosack, Mark D. Wilkinson
<span title="2016-05-12">2016</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/bbmitkj3efgeppizzjrx6w5emu" style="color: black;">Frontiers in Plant Science</a> </i> &nbsp;
Facile access to such core data is particularly important for the plant sciences, where individual genetic and phenotypic observations have the added complexity of being dispersed over a wide diversity  ...  of plant species vs. the relatively fewer host species of interest to biomedical researchers.  ...  Thanks to the numerous Data FAIR Port workshop project participants for the ideas upon which this work was founded, and EU ELIXIR for sponsoring FAIR Data Hackathons that enabled creation of early prototypes  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fpls.2016.00641">doi:10.3389/fpls.2016.00641</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27433158">pmid:27433158</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4922217/">pmcid:PMC4922217</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/aq2r3jg77fa2xevr267uyt7qw4">fatcat:aq2r3jg77fa2xevr267uyt7qw4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190429003648/https://repository.rothamsted.ac.uk/download/a98a9030acf1a191d2888cd01fce776dcd759111966ea3507d8caa8ba8732de9/1380037/fpls-07-00641.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ca/16/ca163362505fe8c9ac08ae338c9b5417657dbe59.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fpls.2016.00641"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4922217" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Measurement Recorder: developing a useful tool for making species descriptions that produces computable phenotypes

Hong Cui, Limin Zhang, Bruce Ford, Hsin-Liang Cheng, James A Macklin, Anton Reznicek, Julian Starr
<span title="2020-11-20">2020</span> <i title="Oxford University Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ejkvir3kzbdojf5kygupkidsca" style="color: black;">Database: The Journal of Biological Databases and Curation</a> </i> &nbsp;
To help authors efficiently produce species phenotypes while producing computable data, we are experimenting with an author-driven ontology development approach and developing and evaluating a series of  ...  Future work includes representing the semantic data as Resource Description Framework (RDF) knowledge graphs and characterizing the division of work between authors as domain knowledge providers and ontology  ...  Acknowledgements The authors thank Dr Carla Zelmer, Instructor, Department of Biological Sciences, University of Manitoba, for recruiting participants for this research.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baaa079">doi:10.1093/database/baaa079</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33216896">pmid:33216896</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7678789/">pmcid:PMC7678789</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5vwrfvjovrelzjr3llmijbie2m">fatcat:5vwrfvjovrelzjr3llmijbie2m</a> </span>
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Bluster or Lustre: Can AI Improve Crops and Plant Health?

Laura-Jayne Gardiner, Ritesh Krishna
<span title="2021-12-09">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3wvjgpafonfk5f6pu57vw72ave" style="color: black;">Plants</a> </i> &nbsp;
Overall, we hope to raise awareness and, as a result, promote usage, of AI related approaches where they can have appropriate impact to improve practices in agricultural and plant sciences.  ...  We address the question—Can AI improve crops and plant health?  ...  [70] developed Agronomic Linked Data (AgroLD), a knowledge-based system that uses Semantic Web technologies and standard ontologies to integrate and query data for various plant species, including corn  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/plants10122707">doi:10.3390/plants10122707</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34961177">pmid:34961177</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8707749/">pmcid:PMC8707749</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xngdfxjuvnhuvcfmrzt6n5eeka">fatcat:xngdfxjuvnhuvcfmrzt6n5eeka</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20211220094749/https://mdpi-res.com/d_attachment/plants/plants-10-02707/article_deploy/plants-10-02707.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e7/bc/e7bcb7ad98254034eb5e7139e4526273cb384340.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/plants10122707"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8707749" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Paddy Rice Imagery Dataset for Panicle Segmentation

Hao Wang, Suxing Lyu, Yaxin Ren
<span title="2021-07-31">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/yws6xlpwzjf7llvhkn3wayuvfu" style="color: black;">Agronomy</a> </i> &nbsp;
However, few public datasets are available for rice-panicle phenotyping.  ...  Accurate panicle identification is a key step in rice-field phenotyping.  ...  Introduction In the face of global population growth and climate change, plant breeders and agronomists strive for improved crop yields and quality to ensure regional food security, regulate the market  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/agronomy11081542">doi:10.3390/agronomy11081542</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/i5vzmnojyjca3m3wlorcnhcyvy">fatcat:i5vzmnojyjca3m3wlorcnhcyvy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210803005115/https://res.mdpi.com/d_attachment/agronomy/agronomy-11-01542/article_deploy/agronomy-11-01542.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/30/6a/306adb2f3eab16e8f5cb47db5eede7dcaabf669d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/agronomy11081542"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

Polish network of research infrastructure for plant phenotyping

Hanna Ćwiek-Kupczyńska, Paweł Krajewski
<span title="2021-09-03">2021</span> <i title="Pensoft Publishers"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dggut6cprnfkfloibuzvaibabe" style="color: black;">Research Ideas and Outcomes</a> </i> &nbsp;
The application entitled "Polish network of research infrastructure for plant phenotyping" was submitted to the Polish Ministry of Science and Higher Education in June 2018; the project was not included  ...  This document is an edited version of the original application for inclusion of a strategic research infrastructure project in the Polish Roadmap for Research Infrastructures.  ...  The cost of the current infrastructure (with the possibility of its development) Annual average costs of plant phenotyping in IGR PAN evaluated on the basis of data for 2016-2017 are presented in Table  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3897/rio.7.e73858">doi:10.3897/rio.7.e73858</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/e6t7skw3zzdq7da522fxvicisi">fatcat:e6t7skw3zzdq7da522fxvicisi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210907233638/https://riojournal.com/lib/ajax_srv/generate_pdf.php?document_id=73858&amp;readonly_preview=1&amp;file_id=0" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/aa/8c/aa8c391a648f5cb9105f435c6d15ee95e411f4ed.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3897/rio.7.e73858"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

e-ROSA D3.7 - Foresight Roadmap Paper

Panagiotis Zervas, Nikos Manouselis, Pythagoras Karampiperis, Odile Hologne, Sander Janssen, Johannes Keizer
<span title="2018-10-17">2018</span> <i title="Zenodo"> Zenodo </i> &nbsp;
roadmaps as reference for our future work iii) the identification and mapping of different entities (organization, initiatives, facilities, data points etc.) to describe the data ecosystem. - Analyse  ...  the scientific challenges and researchers needs, working on use cases in different domains: smart farming, omics/phenotyping, food and nutrition, with interviews and workshop - Describe a vision for open  ...  BrAPI is now a de facto standard for plant phenotyping and serves as a backend for major services like the Elixir Plant Data Lookup service under development.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.1479659">doi:10.5281/zenodo.1479659</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6tiv5h5qkbhkddpf3q2wgfuc5i">fatcat:6tiv5h5qkbhkddpf3q2wgfuc5i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200215044646/https://zenodo.org/record/1479659/files/e-ROSA%20D3.7%20-%20Foresight%20Roadmap%20Paper.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/99/96/999657e4019ef068278f7e108091365b82705cf6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.1479659"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

E-Rosa D3.7 - Foresight Roadmap Paper

Zervas, Panagiotis; Manouselis, Nikos; Karampiperis, Pythagoras; Hologne, Odile; Janssen, Sander; Keizer, Johannes
<span title="2018-07-13">2018</span> <i title="Zenodo"> Zenodo </i> &nbsp;
roadmaps as reference for our future work iii) the identification and mapping of different entities (organization, initiatives, facilities, data points etc.) to describe the data ecosystem. - Analyse  ...  the scientific challenges and researchers needs, working on use cases in different domains: smart farming, omics/phenotyping, food and nutrition, with interviews and workshop - Describe a vision for open  ...  BrAPI is now a de facto standard for plant phenotyping and serves as a backend for major services like the Elixir Plant Data Lookup service under development.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.1314186">doi:10.5281/zenodo.1314186</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vxmlykbaxzgofbiscycjrpk53i">fatcat:vxmlykbaxzgofbiscycjrpk53i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201226124734/https://zenodo.org/record/1314186/files/D3.7%20-%20Foresight%20Roadmap%20Paper.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c9/7c/c97cd7fa27978b00822ef7b90667e3105c53fac7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.1314186"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

Generation of the NIR spectral Band for Satellite Images with Convolutional Neural Networks [article]

Svetlana Illarionova, Dmitrii Shadrin, Alexey Trekin, Vladimir Ignatiev, Ivan Oseledets
<span title="2021-06-13">2021</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Conducted study shows the advantages of generating the extra band and its implementation in applied challenges reducing the required amount of labeled data.  ...  We evaluate the impact of a generated channel on the model performance for solving the forest segmentation task.  ...  Since NIR provides valuable auxiliary data in plant phenotyping tasks, NIR generation can be extended for greenhouses where high precision is vital [26] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2106.07020v1">arXiv:2106.07020v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/quik5qzflvff7cynzusy5ruey4">fatcat:quik5qzflvff7cynzusy5ruey4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210616042435/https://arxiv.org/pdf/2106.07020v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b5/b5/b5b5794d9db0730e25b62dee8a5afa37e95c106e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2106.07020v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data

Ethalinda K. S. Cannon, Scott M. Birkett, Bremen L. Braun, Sateesh Kodavali, Douglas M. Jennewein, Alper Yilmaz, Valentin Antonescu, Corina Antonescu, Lisa C. Harper, Jack M. Gardiner, Mary L. Schaeffer, Darwin A. Campbell (+10 others)
<span title="">2011</span> <i title="Hindawi Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6eem6zxfjvcardcgv2tqc6ywoe" style="color: black;">International Journal of Plant Genomics</a> </i> &nbsp;
The purpose of the online resource presented here, POPcorn (Project Portal for corn), is to enhance accessibility of maize genetic and genomic resources for plant biologists.  ...  minimal data warehousing to search for sequence matches in online resources of diverse offsite projects, and (3) a set of tools that enables researchers to migrate their data to the long-term model organism  ...  Acknowledgments The authors thank Martin Spalding for helping with administrative aspects of project direction, Matthew Steven for contributing to the conceptualization of some of the BLAST capabilities  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2011/923035">doi:10.1155/2011/923035</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22253616">pmid:22253616</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3255282/">pmcid:PMC3255282</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qke2v5v3erh7jep4btmzx47pue">fatcat:qke2v5v3erh7jep4btmzx47pue</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809021420/http://hos.ufl.edu/sites/default/files/faculty/kekoch/publications/POPcorn-full%20article.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ed/0c/ed0c7b11f4313a753fa28ec05dee6737ce998188.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2011/923035"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> hindawi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3255282" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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