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Preface

Oscar Ibarra, Lila Kari, Steffen Kopecki
2015 Natural Computing  
If the final results are defined by only taking the terminal strings out of the designated output node, then for these extended hybrid networks of evolutionary processors only four nodes are needed in  ...  The paper ''Computational completeness of complete, star-like, and linear hybrid networks of evolutionary processors with a small number of processors'', by Artiom Alhazov, Rudolf Freund, Vladimir Rogozhin  ... 
doi:10.1007/s11047-015-9535-0 fatcat:mdo7er3frfcpjb35eux6dgn2le

Abstracts of Doctor Habilitatus Thesis

Artiom Alhazov
2013 Computer Science Journal of Moldova  
] networks of evolutionary processors, Maximal and minimal parallelism and asynchronous mode.  ...  Structure of the thesis: 1  ...  nodes in the computationally complete networks of evolutionary processors.  ... 
doaj:1977f6cd2d7c4a2b94efde02c79b757c fatcat:kcqre6g4q5a5fhur5llxpkrjqi

Static and dynamic configurable systems

E. Sanchez, M. Sipper, J.-O. Haenni, J.-L. Beuchat, A. Stauffer, A. Perez-Uribe
1999 IEEE transactions on computers  
This paper describes four applications in the domain of configurable computing, considering both static and dynamic systems, including: SPYDER (a reconfigurable processor development system), RENCO (a  ...  Within the domain of configurable computing, we distinguish between two modes of configurability: staticÐwhere the configurable processor's configuration string is loaded once at the outset, after which  ...  This work was supported in part by Grant 2000-049349.96 from the Swiss National Science Foundation and by a grant from the Werner Steiger Foundation..  ... 
doi:10.1109/12.773792 fatcat:veobfjyhrvhzvltz5z5c2nkmre

Molecular computing: the lock-key paradigm

M. Conrad
1992 Computer  
This article discusses how these mechanisms can combine to yield networks that perform useful computational functions.  ...  M olecular computing as a technological field is in an early -but rapidstage of development. Primitive prototypes are beginning to appear.  ...  Acknowledgment The preparation of this article was partially supported by Grant No. ECS-9109860 from the US National Science Foundation.  ... 
doi:10.1109/2.166400 fatcat:hogtx7ykerep5av7q3wxgn634u

DNA as a vehicle for the self-assembly model of computing

Michael Conrad, Klaus-Peter Zauner
1998 Biosystems (Amsterdam. Print)  
A DNA version of the self-assembly model of computing, feasible using currently available laboratory techniques, is proposed.  ...  Different input signal patterns are thus represented as DNA duplexes with distinctly different conformational dynamics, in particular different equilibria of B and Z DNA.  ...  In principle, it would be possible to construct a network of conformational processors that would be programmable at the interpretative level and that would therefore have general powers of computation  ... 
doi:10.1016/s0303-2647(97)00062-2 pmid:9492955 fatcat:ufl7hfsy5bbzdpmhhd3nhuh6ae

Framework of an evolutionary design system incorporating design information and history

Kang-Soo Lee, Kunwoo Lee
2001 Computers in industry (Print)  
Current CAD systems are powerful in representing the shape of a product, but they do not carry the design information that has been used or created in designing the product.  ...  We propose an integrated design system to enable the storage and usage of design information in addition to shape manipulation.  ...  Acknowledgements This work was supported by the Turbo and Power Machinery Research Center in the Institute of Advanced Machinery and Design, Daewoo Heavy Industries and BK21.  ... 
doi:10.1016/s0166-3615(01)00075-6 fatcat:25eu2i6zuzaxpow46lueh6xetu

Efficient Task Scheduling Approach Relevant to the Hardware/Software Co-Design of Embedded System

Barbara Korou�i� Seljak
2000 Journal of Computing and Information Technology  
As hardware/software co-design of embedded systems has been enabled by advances in computer technologies, reprogrammable hardware can be used to implement a co-processor to perform most of the kernel functions  ...  In this paper, a complex scheduling approach, which takes into account advantages of evolutionary computation (i.e., neurocomputing and genetic search and optimization) is presented.  ...  Acknowledgement The author gratefully acknowledges the contributions of Professor Jim E. Cooling.  ... 
doi:10.2498/cit.2000.03.03 fatcat:ldm5tasw5feqrbrvo3shbnnsq4

The parallelism motifs of genomic data analysis

Katherine Yelick, Aydın Buluç, Muaaz Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven Hofmeyr, Oguz Selvitopi (+2 others)
2020 Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences  
We consider several problems in high-performance genomics analysis, including alignment, profiling, clustering and assembly for both single genomes and metagenomes.  ...  We identify some of the common computational patterns or 'motifs' that help inform parallelization strategies and compare our motifs to some of the established lists, arguing that at least two key patterns  ...  For example, Darwin [62] is a co-processor specifically designed to perform fast all-to-all long read overlapping and alignment in the context of assembly.  ... 
doi:10.1098/rsta.2019.0394 pmid:31955674 fatcat:kzujmq5u2refvhoovtb2ap5vha

Hardware solutions for evolutionary robotics [chapter]

Dario Floreano, Francesco Mondada
1998 Lecture Notes in Computer Science  
Despite the importance of keeping in mind the hard constraints of operating with physical robots, simulations still play an important role in evolutionary robotics for at least two sets of reasons:  ...  Finally, we shall address the issue of monitoring and analysis of evolved robotic controllers. Between Simulation and Real World Evolutionary robotics has its roots in simulations.  ...  Acknowledgements The authors wish to thank Edo Franzi and Andr e Guignard for important contributions in the design of the hardware components described above.  ... 
doi:10.1007/3-540-64957-3_69 fatcat:jxrfotw7s5dqthj2gzunifmt7e

Parallel and Distributed Genetic Algorithm with Multiple-Objectives to Improve and Develop of Evolutionary Algorithm

Khalil Ibrahim
2016 International Journal of Advanced Computer Science and Applications  
In this paper, we argue that the timetabling problem reflects the problem of scheduling university courses, So you must specify the range of time periods and a group of instructors for a range of lectures  ...  to check a set of constraints and reduce the cost of other constraints ,this is the problem called NP-hard, it is a class of problems that are informally, it's mean that necessary operations to solve  ...  interconnection networks [4] , [11] .  ... 
doi:10.14569/ijacsa.2016.070524 fatcat:6m3coa6yizgzrhnlsgzqeseb5m

A STUDY OF BIOINFORMATICS APPLICATIONS AND MULTICORE ARCHITECTURE

Pradnya Borkar, Vijaya Bhute
2019 International Journal of Engineering Applied Sciences and Technology  
Genetic Algorithm is most popular type of evolutionary method and its basic goal is to find out the best optimum result in any given problem.  ...  In this field, genetic algorithm plays an important role when it comes to the enlargement and improvement such as prediction of RNA secondary structure.  ...  The actual assembly of the amino acids in their proper sequence is the translation which takes place in the cytoplasm of a cell.  ... 
doi:10.33564/ijeast.2019.v04i02.015 fatcat:gltddcgm4rg2fpnnkz5wf6gite

Artificial Chemistries—A Review

Peter Dittrich, Jens Ziegler, Wolfgang Banzhaf
2001 Artificial Life  
evolution of organizations in general.  ...  Furthermore, artificial chemistries have a broad application range of practical problems as shown in this review. 2  ...  This work was originally inspired by the workshop "The right stuff" of the ALIFE VI conference, where several of the challenging questions were raised.  ... 
doi:10.1162/106454601753238636 pmid:11712956 fatcat:yny422rn4ff6dmlca7s5ayuok4

Another expert system rule inference based on DNA molecule logic gates

Piotr Wąsiewicz, Ryszard S. Romaniuk
2013 Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2013  
With the help of silicon industry microfluidic processors were invented utilizing nano membrane valves, pumps and microreactors.  ...  The main part of this work includes the concept of logic gates based on typical genetic engineering reactions.  ...  Wasiewicz [11, 13] also proposed the evolutionary programming of logic function graphs, the evaluation of which is based on PCR. Figure 5.  ... 
doi:10.1117/12.2032392 fatcat:ctao4i3dijcxdeooijxra7huaq

Assembling genomes on large-scale parallel computers

A. Kalyanaraman, S.J. Emrich, P.S. Schnable, S. Aluru
2007 Journal of Parallel and Distributed Computing  
We report the partitioning of more than 1.6 million fragments of over 1.25 billion nucleotides total size into genomic islands in under 2 h on 1024 processors of an IBM BlueGene/L supercomputer.  ...  In this paper, we present the first massively parallel genome assembly framework.  ...  We are grateful to the anonymous reviewers for commenting on an earlier version of this manuscript. This research was supported in part by NSF Grants CNS-0521568 and DBI-0527192, and an IBM Ph.D.  ... 
doi:10.1016/j.jpdc.2007.05.014 fatcat:2uzkxv7tkze6tb5bhvh7fo6swu

Assembling genomes on large-scale parallel computers

A. Kalyanaraman, S.J. Emrich, P.S. Schnable, S. Aluru
2006 Proceedings 20th IEEE International Parallel & Distributed Processing Symposium  
We report the partitioning of more than 1.6 million fragments of over 1.25 billion nucleotides total size into genomic islands in under 2 h on 1024 processors of an IBM BlueGene/L supercomputer.  ...  In this paper, we present the first massively parallel genome assembly framework.  ...  We are grateful to the anonymous reviewers for commenting on an earlier version of this manuscript. This research was supported in part by NSF Grants CNS-0521568 and DBI-0527192, and an IBM Ph.D.  ... 
doi:10.1109/ipdps.2006.1639259 dblp:conf/ipps/KalyanaramanESA06 fatcat:yufjb6ql6bg6lmbv663oe2gipq
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