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Strand spaces and rank functions:more than distant cousins

J. Heather
Proceedings 15th IEEE Computer Security Foundations Workshop. CSFW-15  
The strand spaces model and the rank functions model have both been used successfully to analyse and verify security protocols running on unbounded networks.  ...  At first sight, these two approaches appear rather different; however, close inspection reveals that there are strong links between strand spaces and rank functions.  ...  Thanks are also due to Joshua Guttman, Steve Hailes, and Daniel Hill for reading an earlier draft.  ... 
doi:10.1109/csfw.2002.1021810 dblp:conf/csfw/Heather02 fatcat:stky63ycgvfp7jedjubztoktyu

Fold and function predictions for Mycoplasma genitalium proteins

Leszek Rychlewski, Baohong Zhang, Adam Godzik
1998 Folding & design  
Uncharacterized proteins from newly sequenced genomes provide perfect targets for fold and function prediction.  ...  function can be assigned to almost 80% of the entire genome.  ...  Skolnick and J. Fetrow. We also thank A. Šali for providing us with a MOD-ELLER software package, as well as for help and advice in using it. This work was supported by NIH Grant No. GM48835.  ... 
doi:10.1016/s1359-0278(98)00034-0 pmid:9710568 fatcat:wyz56a5sv5fqteuasyketi6emi

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to Glutaredoxins/Thioredoxins and T 1 Ribonucleases 1 1Edited by F. Cohen

Jacquelyn S Fetrow, Jeffrey Skolnick
1998 Journal of Molecular Biology  
Unfortunately, current methods, including global sequence alignment and local sequence motif identi®cation, are limited by the extent of sequence similarity between sequences of unknown and known function  ...  Prediction of a novel function for the gamma subunit of a yeast glycosyl transferase and prediction of the function of two hypothetical yeast proteins whose models were produced via threading are presented  ...  Godzik and A. Ortiz for stimulating discussions. This work was supported, in part, by a grant from Johnson and Johnson.  ... 
doi:10.1006/jmbi.1998.1993 pmid:9719646 fatcat:cnkoh5xepvbsle6bgvlcn3w5f4

The Role and Function of Author Interviews in the Contemporary Anglophone Literary Field

Rebecca Roach
2020 Book History  
I am the author of more than forty books of fiction, poetry, and critical essays.  ...  If we consider how writers fare in this environment, we see more continuity than While opening with a plug for her new series and latest book (and hyperlinking to more information), the author follows  ... 
doi:10.1353/bh.2020.0009 fatcat:ag23n6fvyrd5ff2jz3yzroiwce

Kin Against Kin: Internal Co-selection and the Coherence of Kinship Typologies

Sam Passmore, Wolfgang Barth, Kyla Quinn, Simon J. Greenhill, Nicholas Evans, Fiona M. Jordan
2021 Biological Theory  
But the observed diversity of kinship terminology is considerably smaller than the enormous theoretical design space.  ...  This approach reveals, for ego's generation, some broad patterning consistent with the canonical typology, but diversity (and mixed systems) is considerably higher than classical typologies suggest.  ...  We are grateful to the organizers and participants of the "Revisiting the Evolution of Kinship" meeting for stimulating feedback, and to Kim Sterelny for his encouragement and patience.  ... 
doi:10.1007/s13752-021-00379-6 fatcat:cbscw2lvdjdbdmc4jzzvqpzbum

Why do we remember? The communicative function of episodic memory

Johannes B. Mahr, Gergely Csibra
2017 Behavioral and Brain Sciences  
Here, we offer a comprehensive characterization of episodic memory in representational terms and propose a novel functional account on this basis.  ...  Episodic memory has been analyzed in a number of different ways in both philosophy and psychology, and most controversy has centered on its self-referential, autonoetic character.  ...  2015) as well as social rank (Kumaran et al. 2016) .  ... 
doi:10.1017/s0140525x17000012 pmid:28100294 pmcid:PMC5404722 fatcat:x3ffv2qlyjcila7t25miugmsie

Plant Biomechanics: An Engineering Approach to Plant Form and Function

R. A. Spicer, K. J. Niklas
1993 Journal of Ecology  
body, are much more diverse and often more complex than those encountered in animal systems (chaps. 5 -6 ).  ...  Jensen, Taylor, and W iebe (1961) reported that root re sistance in the sunflower, Helianthus, is more than 1.5 times that of the leaves and more than 3.8 times that of the stem.  ...  The condition o f comprising more than one multicellular type o f organism in a complete life cycle.  ... 
doi:10.2307/2261541 fatcat:bkg3uo6sefhvboufvbbx6dzpje

DISTANTLY READING DANTE TRANSLATIONS

Jacob Blakesley
2018 Vertimo studijos  
The theoretical background of this project draws on Franco Moretti's 'distant reading', David Damrosch's theories of world literature, and Johan Heilbron's world system of translations.  ...  The second strand will study the formal aspects of the translations, seeing where the Commedia was translated into terza rima, and discovering the predominant metrical forms of translations across the  ...  Italian is nowadays considered a semi-central language, less prestigious and central than English and French, but more central than languages like Finnish and Hungarian.  ... 
doi:10.15388/vertstud.2017.10.11282 fatcat:r45d67nlj5an3lvkblcuvol7eu

Gender, Class and Ideology: The Social Function of Virgin Sacrifice in Euripides'Children of Herakles

David Kawalko Roselli
2007 Classical Antiquity  
We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact support@jstor.org.  ...  In addition to representing and mystifying the interests of elite, lower class and marginal groups, the play glorifies a subordinate character whose contradictory social status (both subordinate and elite  ...  make-up of the hoplite ranks by relatively wealthy citizens, rather than the reality of thêtes serving as hoplites.  ... 
doi:10.1525/ca.2007.26.1.81 fatcat:xd4gky2r75gb5jrm7vbz4liwwm

Metastability and Inter-Band Frequency Modulation in Networks of Oscillating Spiking Neuron Populations

David Bhowmik, Murray Shanahan, Lawrence M. Ward
2013 PLoS ONE  
Recent theories suggest that transient periods of synchronization and desynchronization provide a mechanism for dynamically integrating and forming coalitions of functionally related neural areas, and  ...  Groups of neurons firing synchronously are hypothesized to underlie many cognitive functions such as attention, associative learning, memory, and sensory selection.  ...  The region of the parameter space in which the weight and connection ratio are high facilitates more information transfer but less variation in coalitions.  ... 
doi:10.1371/journal.pone.0062234 pmid:23614040 pmcid:PMC3628585 fatcat:35b4rlhivrczzkod5nju53sbji

Diagrammatics for Soergel Categories

Ben Elias, Mikhail Khovanov
2010 International Journal of Mathematics and Mathematical Sciences  
We present this category, when the Weyl group is the symmetric group, in the language of planar diagrams with local generators and local defining relations.  ...  DMS-0706924 and DMS-0739392. They are grateful to Geordie Williamson and Catharina Stroppel for remarks and suggestions on an earlier version of this paper.  ...  When we have an edge in an i-graph, a neighborhood of that edge in the full graph will be nothing more than a sequence of 4-valent vertices as the i-strand crosses distant strands.  ... 
doi:10.1155/2010/978635 fatcat:bykstfzsfbgehgl5qz43xrialy

Nidovirales: Evolving the largest RNA virus genome

Alexander E. Gorbalenya, Luis Enjuanes, John Ziebuhr, Eric J. Snijder
2006 Virus Research  
Replicase gene expression is under the principal control of a ribosomal frameshifting signal and a chymotrypsin-like protease, which is assisted by one or more papain-like proteases.  ...  Nidoviruses employ single-stranded, polycistronic RNA genomes of positive polarity that direct the synthesis of the subunits of the replicative complex, including the RNA-dependent RNA polymerase and helicase  ...  These relationships have originally been delineated using bioinformatics tools and are now more and more supported by the results of functional and structural studies.  ... 
doi:10.1016/j.virusres.2006.01.017 pmid:16503362 pmcid:PMC7114179 fatcat:iedu6javo5gtzk5igni2vj5rpu

The African Swine Fever Virus Transcriptome

Gwenny Cackett, Dorota Matelska, Michal Sýkora, Raquel Portugal, Michal Malecki, Jürg Bähler, Linda Dixon, Finn Werner
2020 Journal of Virology  
A thorough understanding of RNAP and transcription factor function, and the sequence context of their promoter motifs, as well as accurate knowledge of which genes are expressed when and the amino acid  ...  Here we present the first much-needed genome-wide transcriptome study that provides unique insight into ASFV transcription and serves as a resource to aid future functional analyses of ASFV genes which  ...  lab and Tine Arnvig for critical readings of the manuscript.  ... 
doi:10.1128/jvi.00119-20 pmid:32075923 pmcid:PMC7163114 fatcat:fqs3k3vkhjeehhwjvsd34uqnbu

Technology, Time–Space, and the Remediation of Neighbourhood Life

Michael Crang, Tracie Crosbie, Stephen Graham
2007 Environment and planning A  
Here, place "is always slower, more earthy, more concrete, more grounded, and more real than space."  ...  space work by opposing "virtual" spaces and mediated activities to "real" places.  ...  If they are entities at all, they share functions and spaces over coterminous territories, or overlapping regions of non-exclusivity.  ... 
doi:10.1068/a38353 fatcat:hiv5lysdubg5ppdyzxkhqovebe

Robust physical methods that enrich genomic regions identical by descent for linkage studies: confirmation of a locus for osteogenesis imperfecta

Peter Brooks, Charles Marcaillou, Maud Vanpeene, Jean-Paul Saraiva, Daniel Stockholm, Stephan Francke, Reyna Favis, Nadine Cohen, Francis Rousseau, Frédéric Tores, Pierre Lindenbaum, Jörg Hager (+1 others)
2009 BMC Genetics  
Acknowledgements We thank Jan Mous and Elke Roschmann for critical reading and comments; Lon Aggerbeck and David Rickman, CNRS, Gif-sur-Yvette for initial DNA array printing; Stephanie Maillard and Virginie  ...  Analysis of the OI family pairs revealed more than 30 peaks of increased IBD sharing with nominal p-values < 2 x 10 -5 ( Figure 8 ).  ...  Average spacing was 1.2 Mb and median spacing 0.95 Mb. Duplicate sets of blocks were printed in two zones in order to maximally separate the two sets of duplicates printed in each block.  ... 
doi:10.1186/1471-2156-10-16 pmid:19331686 pmcid:PMC2679057 fatcat:lcsqnmklsjfibbzxvhsgincs5u
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