A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Filters
Ultra-fast Evaluation of Protein Energies Directly from Sequence
2005
PLoS Computational Biology
Preserved Fulltext
Citation: Grigoryan G, Zhou F, Lustig SR, Ceder G, Morgan D, et al. (2006) Ultra-fast evaluation of protein energies directly from sequence. PLoS Comput Biol 2(6): e63. ...
Second, the agreement between two full-atom methods that we tested and their CE sequence-based expressions is very high (root mean square deviation 1.1-4.7 kcal/mol, R 2 ¼ 0.7-1.0). ...
is expressed as: f ðrÞ ¼ J 0 þ X i r i 6 ¼ 0 J i r i / r i ðr i Þ þ X i 6 ¼ j r i ; r j 6 ¼ 0 J ij r i r j / r i ðr i Þ/ r j ðr j Þ þ Á Á Á ¼ J 0 þ X i r i 6 ¼ 0 J i r i þ X i 6 ¼ j r i ; r j 6 ¼ 0 J ...
doi:10.1371/journal.pcbi.0020063.eor
fatcat:shyxuf6ngbcxfluweotmjjx6la
Ultra-Fast Evaluation of Protein Energies Directly from Sequence
2006
PLoS Computational Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Citation: Grigoryan G, Zhou F, Lustig SR, Ceder G, Morgan D, et al. (2006) Ultra-fast evaluation of protein energies directly from sequence. PLoS Comput Biol 2(6): e63. ...
Second, the agreement between two full-atom methods that we tested and their CE sequence-based expressions is very high (root mean square deviation 1.1-4.7 kcal/mol, R 2 ¼ 0.7-1.0). ...
is expressed as: f ðrÞ ¼ J 0 þ X i r i 6 ¼ 0 J i r i / r i ðr i Þ þ X i 6 ¼ j r i ; r j 6 ¼ 0 J ij r i r j / r i ðr i Þ/ r j ðr j Þ þ Á Á Á ¼ J 0 þ X i r i 6 ¼ 0 J i r i þ X i 6 ¼ j r i ; r j 6 ¼ 0 J ...
doi:10.1371/journal.pcbi.0020063
pmid:16789811
pmcid:PMC1479088
fatcat:k6qnybbkdfbpbc6422pxk7dnim
Coarse-Graining Protein Energetics in Sequence Variables
2005
Physical Review Letters
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Other Versions
We show that cluster expansions (CE), previously used to model solid-state materials with binary or ternary configurational disorder, can be extended to the protein design problem. We present a generalized CE framework, in which properties such as energy can be unambiguously expanded in the amino-acid sequence space. The CE coarse grains over nonsequence degrees of freedom (e.g., side-chain conformations) and thereby simplifies the problem of designing proteins, or predicting the compatibility
doi:10.1103/physrevlett.95.148103
pmid:16241695
fatcat:7lqghxta5nfvzmeaa5jggl2r2u
more »
... f a sequence with a given structure, by many orders of magnitude. The CE is physically transparent, and can be evaluated through linear regression on the energies of training sequences. We show, as example, that good prediction accuracy is obtained with up to pairwise interactions for a coiled-coil backbone, and that triplet interactions are important in the energetics of a more globular zinc-finger backbone.
Translating the Genomics Revolution: The Need for an International Gene Therapy Consortium for Monogenic Diseases
2013
Molecular Therapy
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Page 235 of American Society of Civil Engineers. Collected Journals Vol. 9, Issue 4
[page]
1995
American Society of Civil Engineers. Collected Journals
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
Army Corps of Engineers, for their support of this research project; Steve Stoner and Joe Pace, of the ARMS’s Technical Center of Expertise, for their advice and technical support; and to the programmers ...
R: Base, user’s manual, Version 3.1, Redmond, Wash.
Microsoft. (1991). Microsoft, C/C+ + user’s manual, Version 7.0, Red- mond, Wash.
Reisbeck, S. (1989). ...
Page 2263 of Genetics Vol. 174, Issue 4
[page]
2006
Genetics
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
Larsen, Pamela Larson, Greger Larson, Steve R. Larsson, Jan Lartillot, Nicolas Lascoux, Martin Lasko, Paul Laughon, Allen
Lawrence, Jeffrey
Lazzaro, Brian P. ...
Lustig, Arthur Lydall, David Lyon, Elaine Lyttle, Terrence W.
Ma, Hong
Ma, Xue-Feng Macdonald, Stuart J. Machado, Carlos A. Mackem, Susan Macpherson, John M. Madura, Kiran ...
Page 35 of APCJ Faxnews Vol. 76, Issue 16
[page]
1991
APCJ Faxnews
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
KOCH, ROBERT KOEHLER, STEVE KOSKI, CHRISTINE KOVAC, DANIEL KRINSKY, PETER KRUEGER, ROBERT A. KUMM, HERMAN KURFEES, DONALD B. KYTASAARI, LAWRENCE K.
LAAKSO, THOMAS R. LAMB, JOHN
LAMY, ALFRED
LAM, S. ...
BRENNAN, MICHAEL R. BRICKNELL, CAROLINE T. BRINCAT, LOUIS BROD, ROBERT A. BROLSMA, KEVIN BROWN, J.B. BRUDER JR., THOMAS A. BRUDER, JAMES J. BRUMMERHOP, JC. BRVENIK, JOHN R. ...
Page 35 of APCJ Faxnews Vol. 79, Issue 8
[page]
1994
APCJ Faxnews
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
Williams, Robert A. and Mickey
Williamson, Augustus
Williamson, Richard and Elsie
Wilson, John R. and Eva
Winston, Steve
Wint, Rufus F. ...
Lum, Rolando
Lurie, David
Lustig, Stephen and Lee
Lutz, George and Judy
Lynam, Nicholas
Maas, Joseph
MacKinnon, Malcolm and Barbara
Macway, Ken
Maggio, Thomas E. and Beatrice
Maio, Nick and Michelene
Maisch ...
Page 32 of Detroit Institute of Arts. Bulletin of the Detroit Institute of Arts Vol. 31, Issue 2
[page]
1951
Detroit Institute of Arts. Bulletin of the Detroit Institute of Arts
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
Adolph Cavallo, working with the Associated Cinematographers of Detroit, Adrian Lustig, Steve Bubel and W. C. Brame, wrote and directed a ten-minute color film, Venice in the 18th Century. ...
Walter R. Agard, Dr. George Lechler, Dr. Karl Hersey, Adéle Coulin Weibel, Dr. Ernst Schever, and Francis W. Robinson. ...
Page 45 of Journal of Advertising Research Vol. 14, Issue 2
[page]
1974
Journal of Advertising Research
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
Strickland, Ph.D., President
Thomas R. Leggett, Executive Vice President Philip Lustig, Vice President research
¢ Full service organization
You get both from mail surveys by Erdos and Morgan. ...
Russell, President Clifford R. Knowles, Exec. ...
Page 11208 of Psychological Abstracts Vol. 91, Issue 4
[page]
2004
Psychological Abstracts
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
., 9409
Lunt, Peter, 10070
Luo, Xingguang, 10798 Lupfer, Gwen, 9748
Lusher, Joanne, 10980 Lustig, Stuart L., 10830 Liithl, Andreas, 9746 Liitjohann, Dieter, 11308 Lutz, Piotr, 9992
Lux, Silke, 11649
Luzzatti ...
E., 10133 McCoy, Shannon K., 10539 McCrea, Sean M.. 10529 McCreadie, R. ...
Page 4302 of Psychological Abstracts Vol. 91, Issue 11
[page]
2004
Psychological Abstracts
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
D., 31385
McKeith, Ian G., 32555 McKenna, Steve, 33261 McKenzie, Craig R. ...
Vande, 31219 Luo, Zupei, 31866
Lupart, Judy L., 33130
Lupfer, Michael B., 31463 Lush, Dora, 30552
Lustig, Deborah Freedman, 31232 Luszezynska, Aleksandra, 30413 Lutchmaya, S., 31114
Luterek, Jane A., 31593 ...
Page 38 of APCJ Faxnews Vol. 78, Issue 17
[page]
1993
APCJ Faxnews
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
Barbanel, Steve
Barry, Ron and Ginger Beasley, Milam
Beck, Peter B. ...
Kallal, David
Kane, Jack R.
Karl, Erhard and Margi Kasprzak, Henry
Keenan, James and Jo Ann Kehlhem, A. ...
Page 93 of American Chiropractic Association. The ACA Journal of Chiropractic Vol. 34, Issue 3
[page]
1997
American Chiropractic Association. The ACA Journal of Chiropractic
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
Joseph, DC Santa Clara, California Steve N. Jukich, DC Spokane, Washington Brian D. Justice, DC Rochester, New York Michael T. Kambourelis, DC Palm Bay, Florida Keith R. ...
Lustig, DC St Peters. Missouri Jeffrey R. Lyne, DC Sun Prairie, Wisconsin Paul F. Lyons, Jr, DC North Plainfield, New Jersey Gilbert A. Machacek, DC St Petersburg, Florida Jeffrey C. ...
Page 254 of Florida Bar Journal Vol. 73, Issue 8
[page]
1999
Florida Bar Journal
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
Park NY 11729-2119 Fax: 516/667-0014
LUSTIG, Roy R . 305/442-1731
911 Dou^ Centre
26X S Douglas Rd Coral Gables 331346127
LUSTIG, Stephen Leslie ... 954/4691500
Lustg 6 Assocates
524 S Andrews Ave Ste ...
MA 021165616 E-mail: clustig@fac.nesl.edu Fax: 617/422-7453
LUSTIG, Jordan R . 203/3691300
XI^Lala^e BNd Ste 509 Bridgeport CT 06604-
LUSTIG, Leonard . 516/6676011
21X Dea Pak Ave
21X Deer Pak Ave Oeer ...
« Previous
Showing results 1 — 15 out of 575 results