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SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
[article]
2020
bioRxiv
pre-print
Preserved Fulltext
Summary: SpacePHARER (CRISPR Spacer Phage-Host Pair Finder) is a sensitive and fast tool for de novo prediction of phage-host relationships via identifying phage genomes that match CRISPR spacers in genomic ...
SpacePHARER gains sensitivity by comparing spacers and phages at the protein-level, optimizing its scores for matching very short sequences, and combining evidences from multiple matches, while controlling ...
Each query set Q consists of the translated ORFs q of CRISPR spacers extracted from one prokaryotic genome, and each target set T comprises the putative protein sequences t from a single phage. ...
doi:10.1101/2020.05.15.090266
fatcat:ejjwht7vwbemvj7edbhhpq42ji
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
2021
Bioinformatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2021; you can also visit the original URL.
The file type is application/pdf.
SpacePHARER (CRISPR Spacer Phage-Host Pair Finder) is a sensitive and fast tool for de novo prediction of phage-host relationships via identifying phage genomes that match CRISPR spacers in genomic or ...
SpacePHARER gains sensitivity by comparing spacers and phages at the protein level, optimizing its scores for matching very short sequences, and combining evidence from multiple matches, while controlling ...
The viral genomes were downloaded from NCBI Genbank in 09/2018. ...
doi:10.1093/bioinformatics/btab222
pmid:33792634
pmcid:PMC8504623
fatcat:5rrij3tzlvbk5edflv2a4lhq6y