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A genetic algorithm based approach for multi-objective hardware/software co-optimization

Tania Banerjee, Mohamed Gadou, Sanjay Ranka
2016 Sustainable Computing: Informatics and Systems  
We develop a genetic algorithm based autotuning strategy in this paper.  ...  Our results show how genetic algorithm based autotuning strategy can come up with a close to optimal variant analyzing only about 0.25% of the exploration space.  ...  Department of Energy, National Nuclear Security Administration, Advanced Simulation and Computing Program, as a Cooperative Agreement under the Predictive Science Academic Alliance Program, Contract No  ... 
doi:10.1016/j.suscom.2016.04.001 fatcat:utqxb7gjtraphbh2w5pjoch53e

Experience in engineering of scientific software: The case of an optimization software for oil pipelines [article]

Vahid Garousi, Ehsan Abbasi, Bedir Tekinerdogan
2020 arXiv   pre-print
oil pipelines.  ...  The authors were involved in a technology-transfer project between academia and industry which focused on engineering, development and testing of a software for optimization of pumping energy costs for  ...  based on Genetic Algorithms [8] .  ... 
arXiv:2003.00463v1 fatcat:a424ghcpczeitisuu455etwena

Hardware-software partitioning and pipelined scheduling of transformative applications

K.S. Chatha, R. Vemuri
2002 IEEE Transactions on Very Large Scale Integration (vlsi) Systems  
We present a tool for hardware-software partitioning and pipelined scheduling of transformative applications.  ...  The performance of embedded hardware-software systems that implement transformative applications can be maximized by obtaining a pipelined design.  ...  [19] proposed a genetic algorithm based architecture synthesis approach that uses a scheduling technique similar to [18] . Li et al.  ... 
doi:10.1109/tvlsi.2002.1043323 fatcat:5piedlpp6vgv3jvfhdjkl7cbfi

Building a virtual ligand screening pipeline using free software: a survey

Enrico Glaab
2015 Briefings in Bioinformatics  
virtual ligand screening pipeline using free software | 353  ...  Finally, to facilitate the set-up of corresponding pipelines, a downloadable software system is provided, using platform virtualization to integrate pre-installed screening tools and scripts for reproducible  ...  þ simplex Yes http://rdock.sourceforge.net/ BetaDock [62] Genetic algorithm Yes http://voronoi.hanyang.ac.kr/ software.htm FLIPDock [71] Genetic algorithm Yes http://flipdock.scripps.edu  ... 
doi:10.1093/bib/bbv037 pmid:26094053 pmcid:PMC4793892 fatcat:jwhqn6n3hnh4pjtcmbgv4jq6ia

Automatic extraction of multi-objective aware pipeline parallelism using genetic algorithms

Daniel Cordes, Michael Engel, Peter Marwedel, Olaf Neugebauer
2012 Proceedings of the eighth IEEE/ACM/IFIP international conference on Hardware/software codesign and system synthesis - CODES+ISSS '12  
We have compared the new pipeline parallelization approach to an existing task-level extraction technique.  ...  Therefore, this paper presents the first multi-objective aware approach exploiting pipeline parallelism automatically to make it most suitable for resource-restricted embedded devices.  ...  In the case of a genetic pipeline parallelization approach, disjunct pipeline stages of a loop(nest) which are executed in an interleaved way, like shown in the example of Section 3, should be extracted  ... 
doi:10.1145/2380445.2380463 dblp:conf/codes/CordesEMN12 fatcat:k5jszmotmjfc5hxlzuewz4fx5q

Hybrid Support Vector Regression and Genetic Algorithm Technique - A Novel Approach in Process Modeling

Sandip K Lahiri, Kartik Chandra Ghanta
2009 Chemical product and process modeling  
The method incorporates hybrid support vector regression and genetic algorithm technique (SVR-GA) for efficient tuning of SVR meta parameters.  ...  The algorithm has been applied for prediction of critical velocity of solid liquid slurry flow.  ...  error GENETIC ALGORITHM: AT A GLANCE Genetic Algorithms combine the "survival of the fittest" principle of natural evolution with the genetic propagation of characteristics, to arrive at a robust search  ... 
doi:10.2202/1934-2659.1329 fatcat:xbcpvffgqvhvxkszyyici5zlky

A bi-objective genetic algorithm approach to risk mitigation in project scheduling

Murat Kılıç, Gündüz Ulusoy, Funda Sivrikaya Şerifoğlu
2008 International Journal of Production Economics  
An MIP model and a heuristic solution approach based on genetic algorithms (GAs) is proposed.  ...  The experiments conducted indicate that GAs provide a fast and effective solution approach to the problem. For smaller problems, the results obtained by the GA are very good.  ...  A mixed integer programming model and a heuristic solution approach based on genetic algorithms (GAs) is proposed to solve the problem.  ... 
doi:10.1016/j.ijpe.2006.08.027 fatcat:dqt5pto34zaqrhqnkfd32wjani

Hardware/software partitioning and pipelined scheduling on runtime reconfigurable FPGAs

Mingxuan Yuan, Zonghua Gu, Xiuqiang He, Xue Liu, Lei Jiang
2010 ACM Transactions on Design Automation of Electronic Systems  
In addition, we present an efficient heuristic algorithm based on kernel recognition for the pipelined scheduling problem, a technique borrowed from SW pipelining, to overcome the scalability problem of  ...  Given an input task graph, construct a pipelined schedule on a PRTR FPGA with the goal of maximizing system throughput while meeting a given end-to-end deadline. Both problems are NP-hard.  ...  Shang et al. [2007] used a genetic algorithm to partition a task graph between the CPU and FPGA, and a list scheduling heuristic for task graph scheduling on the FPGA in the inner loop of the genetic  ... 
doi:10.1145/1698759.1698763 fatcat:xnur36bxt5hhja2uh7v5hjqnaq

Pipelined Genetic Propagation

Liucheng Guo, Ce Guo, David B. Thomas, Wayne Luk
2015 2015 IEEE 23rd Annual International Symposium on Field-Programmable Custom Computing Machines  
FPGA-based acceleration has significant potential for speeding up genetic algorithms, but existing FPGA GAs are limited by the generational approaches inherited from software GAs.  ...  To address this problem, this paper proposes a new hardware-oriented approach to GAs, called Pipelined Genetic Propagation (PGP), which is intrinsically distributed and pipelined.  ...  CONCLUSION AND FUTURE WORK This paper proposes a new approach for genetic algorithms called pipelined genetic propagation, which is optimised for reconfigurable hardware.  ... 
doi:10.1109/fccm.2015.64 dblp:conf/fccm/GuoGTL15 fatcat:srjcovjfzzgptgifohcpmaoeuy

Throughput-driven synthesis of embedded software for pipelined execution on multicore architectures

Matin Hashemi, Soheil Ghiasi
2009 ACM Transactions on Embedded Computing Systems  
We present a methodology for pipelined software synthesis of streaming applications.  ...  Throughput-driven synthesis of embedded software for pipelined execution on multi-core architectures.  ...  Third, we develop a heuristic task assignment algorithm for pipeline software synthesis for three or more processors. We recursively use our dual-core algorithm for this purpose.  ... 
doi:10.1145/1457255.1457258 fatcat:w67jzgxhvjhm7pfx7wbgqnjlym

The Popgen Pipeline Platform: A Software Platform for Population Genomic Analyses

Andrew Webb, Jared Knoblauch, Nitesh Sabankar, Apeksha Sukesh Kallur, Jody Hey, Arun Sethuraman
2021 Molecular biology and evolution  
The Pop-Gen Pipeline Platform (PPP) is a software platform for population genomic analyses.  ...  The PPP was designed as a collection of scripts that facilitate common population genomic workflows in a consistent and standardized Python environment.  ...  To promote extensibility of the pipeline, we invite the population genetics community to contribute toward developing additional tools into PPP.  ... 
doi:10.1093/molbev/msab113 pmid:33950197 pmcid:PMC8321520 fatcat:dqromeyuove57fmjobfl2iiany

EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture

Zaigham Shahzad, Fabian Kellermeier, Emily M. Armstrong, Simon Rogers, Guillaume Lobet, Anna Amtmann, Adrian Hills
2018 Plant Physiology  
Therefore, computational methods are used to reconstruct representative prototypes using a range of algorithms for filling in missing information and calculating means.  ...  We developed Root-VIS, a free software tool that facilitates the determination of means and variance of many different RSA features across user-selected sets of root images.  ...  ACKNOWLEDGMENTS We thank Geraldine Goldie, who carried out preliminary consultation and programming as part of a student project at the University of Glasgow.  ... 
doi:10.1104/pp.18.00217 pmid:29895611 pmcid:PMC6084667 fatcat:sxdziyd2dzevtpwloh72q6ypru

RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets

Matthias Scheuch, Dirk Höper, Martin Beer
2015 BMC Bioinformatics  
RIEMS assigns every individual read sequence within a dataset taxonomically by cascading different sequence analyses with decreasing stringency of the assignments using various software applications.  ...  Although a plethora of tools are available, data analysis is still a bottleneck.  ...  The throughput of similarity based binning can also be increased by using fast heuristic approaches applied for instance in the UCLUST and USEARCH algorithms [32] .  ... 
doi:10.1186/s12859-015-0503-6 pmid:25886935 pmcid:PMC4351923 fatcat:yvoadiaqd5hg7mbjxalspvne7e

Specification-based compaction of directed tests for functional validation of pipelined processors

Heon-Mo Koo, Prabhat Mishra
2008 Proceedings of the 6th IEEE/ACM/IFIP international conference on Hardware/Software codesign and system synthesis - CODES/ISSS '08  
The primary contribution of this paper is a compaction technique that can drastically reduce the required number of directed test programs to achieve a coverage goal.  ...  Functional validation is a major bottleneck in microprocessor design methodology.  ...  Rudnick and Patel [14] have proposed dynamic test compaction for sequential circuits using fault simulation and genetic algorithms.  ... 
doi:10.1145/1450135.1450167 dblp:conf/codes/KooM08 fatcat:5euh7ajyavdwbeci6d7pc6wk6u

The Mouse Action Recognition System (MARS): a software pipeline for automated analysis of social behaviors in mice [article]

Cristina Segalin, Jalani Williams, Tomomi Karigo, May Hui, Moriel Zelikowsky, Jennifer J Sun, Pietro Perona, David J Anderson, Ann Kennedy
2020 biorxiv/medrxiv   pre-print
Together, MARS and Bento provide an end-to-end pipeline for behavior data extraction and analysis, in a package that is user-friendly and easily modifiable.  ...  We introduce the Mouse Action Recognition System (MARS), an automated pipeline for pose estimation and behavior quantification in pairs of freely behaving mice.  ...  A) Processing stages of pose estimation pipeline.  ... 
doi:10.1101/2020.07.26.222299 fatcat:jolv6sqtqnbn3dj6uqv4ph463u
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