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SnoopCGH: software for visualizing comparative genomic hybridization data
2009
Bioinformatics
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We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data. ...
Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural ...
Array comparative genomic hybridization (CGH) is a powerful tool for identifying copy number variation between DNA samples. ...
doi:10.1093/bioinformatics/btp488
pmid:19687029
pmcid:PMC2759554
fatcat:mdt3sbulvbbflktzfkwgrwrgry
Genovar: a detection and visualization tool for genomic variants
2012
BMC Bioinformatics
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None of the previously reported CNV analysis tools support this function and the simultaneous visualization of comparative genomic hybridization arrays (aCGH) and sequence alignment. ...
The current version of Genovar is capable of visualizing genomic data from sources such as the aCGH data file and sequence alignment format files. ...
Acknowledgements This work was supported by a grant from Korea Centers for Disease Control and Prevention (4845-301) and intramural grants from the Korea National Institute of Health (2011-N72001-00, 2008 ...
doi:10.1186/1471-2105-13-s7-s12
pmid:22594998
pmcid:PMC3348018
fatcat:vuhz6pxuujgvfosmsg2penp2ri
FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context
2011
Journal of Clinical Bioinformatics
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Results: We have developed a web-based software FISH Oracle to visualize data from multiple array CGH experiments in a genomic context. ...
These features make the software especially suitable for the needs of life scientists. Conclusions: FISH Oracle offers a fast and easy to use visualization tool for array CGH and SNP array data. ...
In the following we will use the term array CGH (array comparative genomic hybridization) as a synonym for methods generating copy number data including classical array CGH tiling microarrays or SNP microarrays ...
doi:10.1186/2043-9113-1-20
pmid:21884636
pmcid:PMC3164613
fatcat:vjmj5wf6gba2vap3vpmce567t4
Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer
2010
Cancer Metastasis Review
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Advances in high-throughput, genome-wide profiling technologies have allowed for an unprecedented view of the cancer genome landscape. ...
As efforts have now turned toward parallel and integrative multidimensional approaches for studying the cancer genome landscape in hopes of obtaining a more insightful understanding of the key genes and ...
SnoopCGH:
software for visualizing comparative genomic hybridization data. Bioinformatics. 2009; 25(20):
2732-2733. [PubMed: 19687029]
90. 2004; 5:13.
[PubMed: 15040819]
92. ...
doi:10.1007/s10555-010-9199-2
pmid:20108112
pmcid:PMC3415277
fatcat:js2mys5m7rhulmwi3a5ncrf3h4