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Simcluster: clustering enumeration gene expression data on the simplex space

Ricardo ZN Vêncio, Leonardo Varuzza, Carlos A de B Pereira, Helena Brentani, Ilya Shmulevich
2007 BMC Bioinformatics  
Here we present a software tool, Simcluster, designed to perform clustering analysis for data on the simplex space.  ...  applicable in a number of contexts, including enumeration-based gene expression data.  ...  Alistair Rust (ISB) for help with the web server. LV is supported by CAPES. CABP is partially supported by CNPq.  ... 
doi:10.1186/1471-2105-8-246 pmid:17625017 pmcid:PMC2147035 fatcat:o3nqa6hwbzhuplzftfiwtukfcu

Simcluster: clustering enumeration gene expression data on the simplex space

Ricardo Vêncio, Ricardo Vêncio, Leonardo Varuzza, Carlos Pereira, Helena Brentani, Ilya Shmulevich
2007 Nature Precedings  
Results: Here we present a software tool, Simcluster, designed to perform clustering analysis for data on the simplex space.  ...  and is thus applicable in a number of contexts, including enumeration-based gene expression data.  ...  Alistair Rust (ISB) for help with the web server. LV is supported by CAPES. CABP is partially supported by CNPq.  ... 
doi:10.1038/npre.2007.202 fatcat:bsa3qg6r35hrregc6onqiaaoh4

Simcluster: clustering enumeration gene expression data on the simplex space

Ricardo Vêncio, Ricardo Vêncio, Leonardo Varuzza, Carlos Pereira, Helena Brentani, Ilya Shmulevich
2007 Nature Precedings  
Results: Here we present a software tool, Simcluster, designed to perform clustering analysis for data on the simplex space.  ...  and is thus applicable in a number of contexts, including enumeration-based gene expression data.  ...  Alistair Rust (ISB) for help with the web server. LV is supported by CAPES. CABP is partially supported by CNPq.  ... 
doi:10.1038/npre.2007.202.1 fatcat:v4n4zqbklbgixpajxpin4xt2cq

An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation

Gregory P Harhay, Timothy PL Smith, Leeson J Alexander, Christian D Haudenschild, John W Keele, Lakshmi K Matukumalli, Steven G Schroeder, Curtis P Van Tassell, Cathy R Gresham, Susan M Bridges, Shane C Burgess, Tad S Sonstegard
2010 Genome Biology  
Clustering of tissues based on tag abundance profiles generally confirmed ontology classification based on anatomy.  ...  Commonalities and variation in sense and antisense transcript tag profiles identified in different tissues facilitate the examination of the relationship between gene expression, tissue, and gene function  ...  Mention of trade names or commercial products in this article is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the US Department of Agriculture  ... 
doi:10.1186/gb-2010-11-10-r102 pmid:20961407 pmcid:PMC3218658 fatcat:b2euiq3ahzdolatnyqcdyl776i