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Sifter-T: A scalable framework for phylogenomic probabilistic protein domain functional annotation

Danillo C Almeida-E-Silva, Ricardo Z N Vêncio
<span title="">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
A scalable framework for phylogenomic probabilistic protein domain functional annotation.  ...  Recently, it has been considered one of the best tools for functional annotation according to the initiative "Critical Assessment of Protein Function Annotation" (CAFA), an open collaborative experiment  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-16-s8-a4">doi:10.1186/1471-2105-16-s8-a4</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4423765/">pmcid:PMC4423765</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ggah4vrlynbazoxoqtygaqh72u">fatcat:ggah4vrlynbazoxoqtygaqh72u</a> </span>
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SIFTER-T: A scalable and optimized framework for the SIFTER phylogenomic method of probabilistic protein domain annotation

Danillo C. Almeida-e-Silva, Ricardo Z.N. Vêncio
<span title="2015-03-01">2015</span> <i title="Future Science, LTD"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6t7cfvh76ranblnkx6doquvcyq" style="color: black;">BioTechniques</a> </i> &nbsp;
Sasso, and other Laboratory for Biological Information Processing (LabPIB) colleagues for critical discussions. We thank the anonymous reviewers whose valuable contributions improved our work.  ...  Statistical Inference of Function Through Evolutionary Relationships (SIFTER) is a powerful computational platform for probabilistic protein domain annotation.  ...  Benchmarks METHODS SUMMARY Sifter-T is a framework that extends the functionality of Sifter, a prestigious protein functional annotation tool.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2144/000114266">doi:10.2144/000114266</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25757547">pmid:25757547</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bzxjpdhfuvh3nlmrw25xfc3ity">fatcat:bzxjpdhfuvh3nlmrw25xfc3ity</a> </span>
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Highlights from the 1st ISCB Latin American Student Council Symposium 2014

R Parra, Franco L Simonetti, Marcia A Hasenahuer, Gabriel J Olguin-Orellana, Avinash K Shanmugam
<span title="">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
The second place oral talk was by Danilo Almeida-E-Silva, for his work "Sifter-T: A scalable framework for phylogenomic probabilistic protein domain functional annotation" [12] .  ...  Sifter v2.0 is considered as one of the best tools for protein functional annotation with an approach that combines phylogenomics and bayesian graphical models.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-16-s8-a1">doi:10.1186/1471-2105-16-s8-a1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/chej6lvuu5a2hfya5euhz6zahq">fatcat:chej6lvuu5a2hfya5euhz6zahq</a> </span>
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Highlights from the 1st ISCB Latin American Student Council Symposium 2014. Introduction

R Gonzalo Parra, Franco L Simonetti, Marcia A Hasenahuer, Gabriel J Olguin-Orellana, Avinash K Shanmugam
<span title="2014-04-30">2014</span> <i title="Springer (Biomed Central Ltd.)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
This report summarizes the scientific content and activities of the first edition of the Latin American Symposium organized by the Student Council of the International Society for Computational Biology  ...  (ISCB), held in conjunction with the Third Latin American conference from the International Society for Computational Biology (ISCB-LA 2014) in Belo Horizonte, Brazil, on October 27, 2014.  ...  The second place oral talk was by Danilo Almeida-E-Silva, for his work "Sifter-T: A scalable framework for phylogenomic probabilistic protein domain functional annotation" [12] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25955751">pmid:25955751</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4423572/">pmcid:PMC4423572</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5xnetbezwvfpzmz3mouz3ivq6e">fatcat:5xnetbezwvfpzmz3mouz3ivq6e</a> </span>
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