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Sharing and Preserving Computational Analyses for Posterity with encapsulator [article]

Thomas Pasquier and Matthew K. Lau and Xueyuan Han and Elizabeth Fong and Barbara S. Lerner and Emery Boose and Merce Crosas and Aaron M. Ellison and Margo Seltzer
2018 arXiv   pre-print
Requiring minimal end-user expertise, encapsulator creates a "time capsule" with reproducible code in a self-contained computational environment. encapsulator provides end-users with a fully-featured desktop  ...  environment for reproducible research.  ...  In keeping with the "open" culture, we defined open-process as the practice of both sharing the source and the input data and providing a description of the entire computational environment, including  ... 
arXiv:1803.05808v2 fatcat:fcbsnojcdvgcdpl7yymorkhl3u

Sharing and Preserving Computational Analyses for Posterity with encapsulator

Thomas Pasquier, Matthew K. Lau, Xueyuan Han, Elizabeth Fong, Barbara S. Lerner, Emery R. Boose, Merce Crosas, Aaron M. Ellison, Margo Seltzer
2018 Computing in science & engineering (Print)  
Requiring minimal end-user expertise, encapsulator creates a "time capsule" with reproducible code in a self-contained computational environment. encapsulator provides end-users with a fully-featured desktop  ...  environment for reproducible research.  ...  In keeping with the "open" culture, we defined open-process as the practice of both sharing the source and the input data and providing a description of the entire computational environment, including  ... 
doi:10.1109/mcse.2018.042781334 fatcat:6ovslmcqwre6pnod26aybbn6pu

A Review of Containerization for Interactive and Reproducible Analysis [article]

Gregory J. Hunt, Johann A. Gagnon-Bartsch
2021 arXiv   pre-print
, a literate programming format for interacting with analyses.  ...  For example, it is now commonplace for underlying analysis code and data to be proffered alongside journal publications and conference talks. Unfortunately, sharing code faces several challenges.  ...  However, unlike uploading code to github, containerizing analyses ensures exact computational reproducibility and enables natural interaction with the shared analyses.  ... 
arXiv:2103.16004v2 fatcat:ysk2vfsstvabdclm5w563tzogu

HEP Software Foundation Community White Paper Working Group - Data and Software Preservation to Enable Reuse [article]

M. D. Hildreth and A. Boehnlein and K. Cranmer and S. Dallmeier and R. Gardner and T. Hacker and L. Heinrich and I. Jimenez and M. Kane and D. S. Katz and T. Malik and C. Maltzahn and M. Neubauer and S. Neubert and Jim Pivarski and E. Sexton and J. Shiers and T. Simko and S. Smith and D. South and A. Verbytskyi and G. Watts and J. Wozniak
2018 arXiv   pre-print
A re-framing of the motivation for preservation to enable re-use is presented.  ...  A series of research and development goals in software and other cyberinfrastructure that will aid in the enabling of reuse of particle physics analyses and production software are presented and discussed  ...  of old analyses, preserving a benchmark analysis for posterity or to pass to a new student, etc.  ... 
arXiv:1810.01191v1 fatcat:unfuy5dsvjbyhn33tkyepckiwi

Opening Reproducible Research: A Research Project Website And Blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1 and TR 864/6-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r was funded by the German  ...  We get to know the common language as well as points of contact for the involved parties as we create a closer connection between research, preservation, and publication communities.  ... 
doi:10.5281/zenodo.1485438 fatcat:v6m44mhrvvfmtkz2urjv5grgu4

Opening Reproducible Research: a research project website and blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1 and TR 864/6-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r was funded by the German  ...  We get to know the common language as well as points of contact for the involved parties as we create a closer connection between research, preservation, and publication communities.  ... 
doi:10.5281/zenodo.2546507 fatcat:dau5hho335boznxi675w6shf6q

Opening Reproducible Research: a research project website and blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1 and TR 864/6-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r was funded by the German  ...  We get to know the common language as well as points of contact for the involved parties as we create a closer connection between research, preservation, and publication communities.  ... 
doi:10.5281/zenodo.2576175 fatcat:izgbl64n4neebbuwct4enci5dm

Opening Reproducible Research: a research project website and blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1 and TR 864/6-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r was funded by the German  ...  We get to know the common language as well as points of contact for the involved parties as we create a closer connection between research, preservation, and publication communities.  ... 
doi:10.5281/zenodo.2361304 fatcat:gspygrzekjb7jprdwe5l4gf6pi

Implementing FAIR Data Infrastructures (Dagstuhl Perspectives Workshop 18472)

Natalia Manola, Peter Mutschke, Guido Scherp, Klaus Tochtermann, Peter Wittenburg, Kathleen Gregory, Wilhelm Hasselbring, Kees den Heijer, Paolo Manghi, Dieter Van Uytvanck
2020 Dagstuhl Manifestos  
to implementing and promoting the establishment of FAIR-compliant infrastructures for research data.  ...  Computer science is uniquely situated to fill this gap by researching and developing tools and technical specifications which can help to realize the creation of FAIR data infrastructures.  ...  Thanks also to Atif Latif (ZBW -Leibniz Information Centre for Economics) for his valuable input for the related computer science research aspects.  ... 
doi:10.4230/dagman.8.1.1 dblp:journals/dagstuhl-manifestos/ManolaMSTWGHHMU20 fatcat:6z4yhlp3xzahfp7whrdn3x2xa4

Opening Reproducible Research: a research project website and blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1 and TR 864/6-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r was funded by the German  ...  The blog text was greatly improved with feedback by EGU's Olivia Trani and Copernicus Publications' Xenia van Edig. Thank you!  ... 
doi:10.5281/zenodo.3515009 fatcat:b3otulyyhjeedken7jepjqbmcy

Opening Reproducible Research: a research project website and blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1 and TR 864/6-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r was funded by the German  ...  We get to know the common language as well as points of contact for the involved parties as we create a closer connection between research, preservation, and publication communities.  ... 
doi:10.5281/zenodo.3634844 fatcat:nrcofo6g5zfztdoupvj25eny3a

Opening Reproducible Research: a research project website and blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1 and TR 864/6-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r was funded by the German  ...  , we see these high priority goals for the foreseeable project's future: New means of interaction with and exploration of scientific spatio-temporal data, analyses, and visualisations based on linked research  ... 
doi:10.5281/zenodo.3403565 fatcat:tosltkk6srcj7mvymjystfiu7q

Morbid curiosity? Discussion of the disposal of amputated limbs on online question and answer sites

Esmée Hanna
2019 Digital Health  
Amputation is a growing health issue with implications for the corporeal form and sense of bodily identity.  ...  The growth of online question and answer sites has created opportunities for social actors to post and respond to a vast array of topic areas, including those that are seen as morbid or taboo.  ...  Digital methods, such as analysing forum posts, are increasingly being used in social science research, allowing for the mediation of human interaction through computers to be understood more robustly  ... 
doi:10.1177/2055207619890473 pmid:31807313 pmcid:PMC6880030 fatcat:6bpphfq2lvfd5pbg36icfsnfg4

Opening Reproducible Research: a research project website and blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1, TR 864/6-1, PE 1632/17-1, KR 3930/8-1, and TR 864/12-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r is funded by the German  ...  We get to know the common language as well as points of contact for the involved parties as we create a closer connection between research, preservation, and publication communities.  ... 
doi:10.5281/zenodo.2576176 fatcat:o75zoynj7jdebbu7wd3jlobbju

Opening Reproducible Research: a research project website and blog [article]

Daniel Nüst, Marc Schutzeichel, Markus Konkol
2018 Zenodo  
Research Foundation (Deutsche Forschungsgemeinschaft, DFG) under project numbers PE 1632/10-1, KR 3930/3-1, TR 864/6-1, PE 1632/17-1, KR 3930/8-1, and TR 864/12-1.  ...  All blog entries of the blog for the research project Opening Reproducible Research (o2r, see also Offene Reproduzierbare Forschung @ DFG GEPRIS), online at https://o2r.info. o2r is funded by the German  ...  We get to know the common language as well as points of contact for the involved parties as we create a closer connection between research, preservation, and publication communities.  ... 
doi:10.5281/zenodo.2576313 fatcat:w4vnb4dnfvhgfhcxsu4uwrnfhy
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