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Shape Neutral Analysis of Graph-based Data-structures [article]

Gregory J. Duck and Joxan Jaffar and Roland H. C. Yap
2018 arXiv   pre-print
A key property of our program analysis is that the target data-structure properties are shape neutral, i.e., the analysis does not check for properties relating to a given data-structure graph shape, such  ...  Nevertheless, the analysis can detect errors in a wide range of data-structure manipulating programs, including those that use lists, trees, DAGs, graphs, etc.  ...  In particular, the analysis is shape neutral, and does not aim to analyze for, nor enforce, a given shape of the graph.  ... 
arXiv:1804.09352v2 fatcat:hg5oxf3obrhtzojokpfsaxwsqe

Shape Neutral Analysis of Graph-based Data-structures

GREGORY J. DUCK, JOXAN JAFFAR, ROLAND H. C. YAP
2018 Theory and Practice of Logic Programming  
A key property of our program analysis is that the target data-structure properties are shape neutral, i.e., the analysis does not check for properties relating to a given data-structure graph shape, such  ...  Nevertheless, the analysis can detect errors in a wide range of data-structure manipulating programs, including those that use lists, trees, DAGs, graphs, etc.  ...  None of these properties depend on the shape of the data-structure. Importantly, all of the properties 1-4 are independent of the data-structure shape, i.e. the analysis is shape neutral.  ... 
doi:10.1017/s147106841800025x fatcat:fdqioqug2bhkretdwkegtilsnm

Neutral Networks of Sequence to Shape Maps [article]

Emma Y. Jin, Jing Qin, Christian M. Reidys
2007 arXiv   pre-print
Furthermore, we show that there exists a certain subset of shapes which carries a natural graph structure.  ...  In this graph any two shapes are connected by a path of shapes with respective neutral networks of distance one. We finally discuss our results and provide a comparison with RNA folding maps.  ...  This work was supported by the 973 Project, the PCSIRT Project of the Ministry of Education, the Ministry of Science and Technology, and the National Science Foundation of China.  ... 
arXiv:0706.0760v2 fatcat:w7tln3fanjdgteuoq26mmpsn7u

Analysis neutral data structure for GDT

Zhengshu Shen, Jami J. Shah, Joseph K. Davidson
2008 Journal of Intelligent Manufacturing  
The model is a super constraint-tolerance-feature-graph (SCTF-Graph).  ...  This paper will demonstrate how the SCTF-Graph model can represent all the tolerance types in the standards, and can contain all the information that is needed for tolerance analysis: nominal geometry  ...  Tolerance data structure The tolerance information in a CTF-Graph Based Model forms a tolerance-graph, called T-Graph.  ... 
doi:10.1007/s10845-008-0096-2 fatcat:2kh7zexgovbg3fxvuvym5wcrvm

Gene duplication and subsequent diversification strongly affect phenotypic evolvability and robustness

V. Jouffrey, A. S. Leonard, S. E. Ahnert
2021 Royal Society Open Science  
This model has previously been used in a variety of contexts to model the assembly and evolution of protein quaternary structure.  ...  We study the effects of non-determinism and gene duplication on the structure of genotype–phenotype (GP) maps by introducing a non-deterministic version of the Polyomino self-assembly model.  ...  The first step is to build the allowed necklaces based on the number of interacting and neutral colours.  ... 
doi:10.1098/rsos.201636 pmid:34168886 pmcid:PMC8220273 fatcat:ee4flmfshrgxlb5av2q7f4pctm

Replication and Mutation on Neutral Networks

C Reidys
2001 Bulletin of Mathematical Biology  
Error threshold { neutral evolution { neutral network { random graph { RNA secondary strucuture. Abstract.  ...  Reidys, Forst, Schuster: Replication on Neutral Networks 2 Reidys, Forst, Schuster: Replication on Neutral Networks 6 Reidys, Forst, Schuster: Replication on Neutral Networks 7  ...  On such a single-shape landscape the superior tness value is assigned to all sequences belonging to the master shape (whose associated neutral network comprises all vertices of the corresponding graph)  ... 
doi:10.1006/bulm.2000.0206 pmid:11146884 fatcat:nrvlais365ebhbt4xwrzhnmizu

A Multimodal Approach for Face Modeling and Recognition

M.H. Mahoor, M. Abdel-Mottaleb
2008 IEEE Transactions on Information Forensics and Security  
structure of the face at each node of the graph.  ...  The edges of the graph are defined based on Delaunay triangulation and a set of mutual relations between the sides of the triangles are defined.  ...  structure of the face at each node of the graph.  ... 
doi:10.1109/tifs.2008.924597 fatcat:sszis2vsyndibhc33ckc7evxpm

Form Follows Content: An Empirical Study on Symbol-Content (In)Congruences in Thematic Maps

Silvia Klettner
2020 ISPRS International Journal of Geo-Information  
Symmetric shapes, on the other hand, emerged to be of high congruence with positive and neutral map topics, whilst incongruent with negative topics.  ...  This research, therefore, draws attention to the principle of contextual congruence to study the correspondences between shape symbols and different geospatial content.  ...  Conflicts of Interest: The author declares no conflict of interest.  ... 
doi:10.3390/ijgi9120719 fatcat:oqlhlerxsjf73f3j37z6vjxgo4

Formulation of effective stiffness for predicting natural frequency of cracked beams

C. V. Chandrashekara, Pavan Suswaram, Dharani J., Himanshu Agarwal, Raj Arjun S. I.
2018 Vibroengineering PROCEDIA  
Consequently, an in-depth analysis is conducted to understand the effectiveness of this new approach.  ...  The present formulation considers the shift in the neutral axis of the cracked beam-element, which has been ignored previously.  ...  A finite element model of a uniform cross sectioned cantilever beam was chosen to provide data for analysis.  ... 
doi:10.21595/vp.2018.20197 fatcat:xq3k7hq6jzhdbaux3wav5ct2kq

RNA Structures with Pseudo-knots: Graph-theoretical, Combinatorial, and Statistical Properties

C Haslinger
1999 Bulletin of Mathematical Biology  
structures based on their graph-theoretical properties.  ...  We find a large fraction of neutral mutations and, in particular, networks of sequences that fold into the same shape. These neutral networks percolate through the entire sequence space.  ...  structures based on their graph-theoretical properties.  ... 
doi:10.1006/bulm.1998.0085 pmid:17883226 pmcid:PMC7197269 fatcat:3hazwuzt2vdkliwfnmnqcwfdky

Review of Data Visualization for Social Media Postings

Nur Atiqah Sia Abdullah, Hamizah Binti Anuar
2018 International Journal of Engineering & Technology  
An analysis by comparing the social media data types, representation, and data visualization techniques is carried out based on the previous studies.  ...  This paper critically discussed the comparison and provides a suggestion for the suitability of data visualization based on the type of social media data in hand.  ...  Acknowledgements The authors express their appreciation to Faculty of Computer and Mathematical Sciences and Universiti Teknologi MARA, Malaysia for sponsoring this paper.  ... 
doi:10.14419/ijet.v7i4.38.27613 fatcat:nnandcabkvbtrbwz3h3jenhrnq

Sequence-structure relations of pseudoknot RNA

Fenix WD Huang, Linda YM Li, Christian M Reidys
2009 BMC Bioinformatics  
The analysis of sequence-structure relations of RNA is based on a specific notion and folding of RNA structure.  ...  We study properties, like the fraction of pseudoknot structures, the dominant pseudoknot-shapes, neutral walks, neutral neighbors and local connectivity.  ...  These combinatorial properties enable us to assign a unique, loop-based energy. In the course of our analysis we show that an RNA pseudoknot structure can be con-structed via simpler substructures.  ... 
doi:10.1186/1471-2105-10-s1-s39 pmid:19208140 pmcid:PMC2648775 fatcat:65myi2yfmzg33axsvp7r4yhzly

Development of VTOL UAV with Module for Direction Finding

Kyoung-Moo Min et al., Kyoung-Moo Min et al.,
2019 International Journal of Mechanical and Production Engineering Research and Development  
During the initial shape design, an estimation of the aircraft weight was first made based on the aircraft components and the bill of materials (BOM) of the aircraft.  ...  After reflecting the weight of all the components in the design, the shape design of the main wing was performed, followed by center of gravity and neutral point estimation, and propulsion system design  ...  Figure 6 shows the XFLR5 analysis model, and Figure 7 shows the graphs of and analysis results.  ... 
doi:10.24247/ijmperdjun201939 fatcat:yyrufzuktveqnj7gk6kquydtce

PSCAN: Spatial scan tests guided by protein structures improve complex disease gene discovery and signal variant detection

Zheng-Zheng Tang, Gregory R. Sliwoski, Guanhua Chen, Bowen Jin, William S. Bush, Bingshan Li, John A. Capra
2020 Genome Biology  
Furthermore, PSCAN enables generation of hypotheses about the molecular basis for the associations in the context of protein structures and functional domains.  ...  Motivated by this tendency, we develop a fast and powerful protein-structure-based scan (PSCAN) approach for evaluating gene-level associations with complex disease and detecting signal variants.  ...  Acknowledgments The authors thank editors and two anonymous reviewers for insightful comments and suggestions that helped improve the quality of the manuscript.  ... 
doi:10.1186/s13059-020-02121-0 pmid:32847609 pmcid:PMC7448521 fatcat:i3sqsorpvvhk3bn3f3syrjubc4

Facial Expression Recognition from Video Sequence Using Self Organizing Feature Map

Walid Amin Mahmoud, Jane Jaleel Stephan, Anmar Abdel Wahab Razzak Razzak
2021 Journal Port Science Research  
Automatic analysis of facial expressions is rapidly becoming an area of intense interest in computer vision and artificial intelligence research communities.  ...  The feature extraction phase had been performed by this method, while the classification phase done by especially designed procedures for shape and direction finding to recognize the pattern of the shape  ...  DATA TYPE DATA BASE FACS CODE SHAPE OF GRAPH RECOG RESULT MATCH RESULT PEAK IMAGE 1+Ra4+ 5 VALIDATING "COHN-KANADE" 15d+17b SAD T summary of all the recognition results are presented in Table (9).Table  ... 
doi:10.36371/port.2020.2.2 fatcat:ehgpwhzbnzdchfrxu3szhusvty
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