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Semantic clinical guideline documents

Henrik Eriksson, Samson W Tu, Mark Musen
<span title="">2005</span> <i title="American Medical Informatics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/g6q27b56yzeupjryv6lby2r2pa" style="color: black;">AMIA Annual Symposium Proceedings</a> </i> &nbsp;
Decision-support systems based on clinical practice guidelines can support physicians and other healthcare personnel in the process of following best practice consistently.  ...  systems.Decision-support authors and guideline users require guidelines in human-readable formats in addition to computer-interpretable ones (e.g., for guideline review and quality assurance).  ...  The Protégé resource is supported, in part, by Grant P41 LM007885 from the National Library of Medicine.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16779037">pmid:16779037</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1560832/">pmcid:PMC1560832</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7tjyizylf5fd7neqc6h2f3q4qu">fatcat:7tjyizylf5fd7neqc6h2f3q4qu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200211023440/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC1560832&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ba/43/ba431059661bedd216e482ed21dd7449cc27ab6a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1560832" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Semantic Representation of Evidence-Based Clinical Guidelines [chapter]

Zhisheng Huang, Annette ten Teije, Frank van Harmelen, Salah Aït-Mokhtar
<span title="">2014</span> <i title="Springer International Publishing"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
In this paper, we propose a lightweight formalism of evidence-based clinical guidelines by introducing the Semantic Web Technology for it.  ...  With the help of the tools which have been developed in the Semantic Web and Natural Language Processing (NLP), the generation of the formulations of evidence-based clinical guidelines become much easy  ...  In Section 3 we propose a semantic representation of evidence-based clinical guidelines by using the semantic web technology.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-319-13281-5_6">doi:10.1007/978-3-319-13281-5_6</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/apocmnyxmrdorbmgnvvtkzpd6i">fatcat:apocmnyxmrdorbmgnvvtkzpd6i</a> </span>
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The CLEF corpus: semantic annotation of clinical text

Angus Roberts, Robert Gaizauskas, Mark Hepple, Neil Davis, George Demetriou, Yikun Guo, Jay Kola, Ian Roberts, Andrea Setzer, Archana Tapuria, Bill Wheeldin
<span title="2007-10-11">2007</span> <i title="American Medical Informatics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/g6q27b56yzeupjryv6lby2r2pa" style="color: black;">AMIA Annual Symposium Proceedings</a> </i> &nbsp;
An important part of IE is the identification of semantic entities and relationships.  ...  We describe the selection of a subset of this corpus for manual annotation of clinical entities and relationships.  ...  Tools Annotation: Knowtator text annotation tool All annotation and consensus set creation Inter annotator agreement scoring In-house scoring software Guidelines and feedback Web site presenting  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18693911">pmid:18693911</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2655900/">pmcid:PMC2655900</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3omfncbe5namtcrhqzqbpygria">fatcat:3omfncbe5namtcrhqzqbpygria</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810123520/http://nactem.ac.uk/workshops/lrec08_ws/slides/Roberts_et_al.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9e/44/9e440fa85bd389ee8abb610a4b4f4da347817f96.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655900" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences

Jung-wei Fan, Elly W Yang, Min Jiang, Rashmi Prasad, Richard M Loomis, Daniel S Zisook, Josh C Denny, Hua Xu, Yang Huang
<span title="">2013</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/aapnwtybrvghlc35hfimbtdlom" style="color: black;">JAMIA Journal of the American Medical Informatics Association</a> </i> &nbsp;
RML selected the clinical notes of non-redundant content. EWY and MJ performed the annotations for iterative guideline and corpus development.  ...  Challenges in NLP for Clinical Data organized by Dr Özlem Uzuner, i2b2, and SUNY.  ...  If coupled appropriately, syntax and semantics can in fact complement each other in forming a robust parsing solution to clinical narratives. 42 Specifically, when superimposed with semantic annotations  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1136/amiajnl-2013-001810">doi:10.1136/amiajnl-2013-001810</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23907286">pmid:23907286</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3822122/">pmcid:PMC3822122</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pcsdtmm2mzgj3o3dhbvs6jmr4e">fatcat:pcsdtmm2mzgj3o3dhbvs6jmr4e</a> </span>
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Towards comprehensive syntactic and semantic annotations of the clinical narrative

Daniel Albright, Arrick Lanfranchi, Anwen Fredriksen, William F Styler, Colin Warner, Jena D Hwang, Jinho D Choi, Dmitriy Dligach, Rodney D Nielsen, James Martin, Wayne Ward, Martha Palmer (+1 others)
<span title="">2013</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/aapnwtybrvghlc35hfimbtdlom" style="color: black;">JAMIA Journal of the American Medical Informatics Association</a> </i> &nbsp;
Objective To create annotated clinical narratives with layers of syntactic and semantic labels to facilitate advances in clinical natural language processing (NLP).  ...  Conclusions This project takes a foundational step towards bringing the field of clinical NLP up to par with NLP in the general domain.  ...  James Masanz from the Mayo Clinic provided outstanding technical support.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1136/amiajnl-2012-001317">doi:10.1136/amiajnl-2012-001317</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23355458">pmid:23355458</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3756257/">pmcid:PMC3756257</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6x5i52erszgvfi5y3szpgikxlq">fatcat:6x5i52erszgvfi5y3szpgikxlq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190502094247/https://dash.harvard.edu/bitstream/handle/1/11879401/3756257.pdf;jsessionid=9C21C457ACEA77120D750EBE5B68BE73?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b8/a0/b8a0928616e94bdef25dadec3936704a717ff4d3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1136/amiajnl-2012-001317"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3756257" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

SemClinBr – a multi institutional and multi specialty semantically annotated corpus for Portuguese clinical NLP tasks [article]

Lucas Emanuel Silva e Oliveira, Ana Carolina Peters, Adalniza Moura Pucca da Silva, Caroline P. Gebeluca, Yohan Bonescki Gumiel, Lilian Mie Mukai Cintho, Deborah Ribeiro Carvalho, Sadid A. Hasan, Claudia Maria Cabral Moro
<span title="2020-01-27">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
In this study, we developed a semantically annotated corpus using clinical texts from multiple medical specialties, document types, and institutions.  ...  The absence of a multi-purpose clinical corpus outside the scope of the English language, especially in Brazilian Portuguese, is glaring and severely impacts scientific progress in the biomedical NLP field  ...  We did not find any study focusing on clinical semantic annotation for pt-br.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2001.10071v1">arXiv:2001.10071v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/crmiayut4rfyxddqs6n34anyue">fatcat:crmiayut4rfyxddqs6n34anyue</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200825153153/https://arxiv.org/ftp/arxiv/papers/2001/2001.10071.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/63/76/637617950255755224529f514c0102a39999aea0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2001.10071v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Process Fragment Recognition in Clinical Documents [chapter]

Camilo Thorne, Elena Cardillo, Claudio Eccher, Marco Montali, Diego Calvanese
<span title="">2013</span> <i title="Springer International Publishing"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
In particular, we study the impact of clinical document syntax and semantics on the precision of activity and temporal relation recognition.  ...  We describe a first experiment on automated activity and relation identification, and more in general, on the automated identification and extraction of computer-interpretable guideline fragments from  ...  By semantic tagging of guidelines, these patterns were identified in the document.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-319-03524-6_20">doi:10.1007/978-3-319-03524-6_20</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/z3jg6vlrtnhpzbugh5xtsmtauq">fatcat:z3jg6vlrtnhpzbugh5xtsmtauq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20150910082115/http://www.inf.unibz.it/~calvanese/papers/thor-etal-AIIA-2013.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/08/e4/08e4524f7be4749d647e3f4556408a33a9681cad.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-319-03524-6_20"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Manual annotation of narrative patient charts – Finnish experiences related to a multilingual text corpus

Päivi Mäkelä-Bengs, Päivi Hämäläinen, Virpi Kalliokuusi, Riikka Vuokko
<span title="2019-03-10">2019</span> <i title="Finnish Journal of eHealth and eWelfare"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gx4y26mlszeubk5wlvwevpyche" style="color: black;">Finnish Journal of eHealth and eWelfare</a> </i> &nbsp;
Main issues affecting the Finnish results were corpus translation quality in a multilingual context and vagueness of annotation guidelines contributing to different interpretations of included semantic  ...  For clinical concepts, the annotators added 818 codes in total, of which 270 (33 %) were exact matches and 548 (66 %) different ones.  ...  Annotation research was conducted in THL while all four authors were working there.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.23996/fjhw.70241">doi:10.23996/fjhw.70241</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/epmxfmspgnfwvezneawihlspr4">fatcat:epmxfmspgnfwvezneawihlspr4</a> </span>
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Evidence-Based Clinical Guidelines in SemanticCT [chapter]

Qing Hu, Zhisheng Huang, Frank van Harmelen, Annette ten Teije, Jinguang Gu
<span title="">2014</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jyopc6cf5ze5vipjlm4aztcffi" style="color: black;">Communications in Computer and Information Science</a> </i> &nbsp;
In this paper, we present a semantic approach of evidence-based clinical guidelines.  ...  We have developed several tools to generate semantic data from textual guidelines. We show how they are useful in SemanticCT for the applications of the Semantic Web technology in medical domains.  ...  In [8] , we have proposed a semantic approach of evidence-based clinical guidelines, in which evidence-based clinical guidelines are represented as the format RDF/RDFS/OWL, the standards in the Semantic  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-662-45495-4_18">doi:10.1007/978-3-662-45495-4_18</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nky7a7xidndavgudendoiqnyai">fatcat:nky7a7xidndavgudendoiqnyai</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170706071654/http://www.cs.vu.nl/%7Eannette/papers-pdf/2014CSWS.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/50/7b/507be27dc4f500f99c8951bb823b4c5f33532932.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-662-45495-4_18"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Knowledge Graphs of Kawasaki Disease

Zhisheng Huang, Qing Hu, Mingqun Liao, Cong Miao, Chengyi Wang, Guanghua Liu
<span title="2021-02-27">2021</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/x77t7madorg4dax6vvdhcnodwi" style="color: black;">Health Information Science and Systems</a> </i> &nbsp;
It integrates a wide range of knowledge resources related to Kawasaki Disease, including clinical guidelines, clinical trials, drug knowledge bases, medical literature, and others.  ...  In this paper, we present an approach for the construction of Knowledge Graphs of Kawasaki Disease.  ...  Disease (e.g., clinical trials, medical publications, clinical guidelines, etc.).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s13755-020-00130-8">doi:10.1007/s13755-020-00130-8</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33680447">pmid:33680447</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7910781/">pmcid:PMC7910781</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qii6sy7tavfsfnkwwmnruoznly">fatcat:qii6sy7tavfsfnkwwmnruoznly</a> </span>
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A Personalization Environment for Multi-version Clinical Guidelines [chapter]

Fabio Grandi
<span title="">2011</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jyopc6cf5ze5vipjlm4aztcffi" style="color: black;">Communications in Computer and Information Science</a> </i> &nbsp;
In this work, we introduce a personalization environment for the representation and efficient management of multi-version clinical guidelines.  ...  In particular, we apply and extend to clinical guidelines solutions we previously developed for norm texts in the legal domain, and show how multi-version representation capabilities and personalization  ...  Obviously, also the annotation of clinical guidelines which defines their semantic versioning must be effected by medical domain experts, as part of the guideline drafting and approval process itself.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-18472-7_5">doi:10.1007/978-3-642-18472-7_5</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/to53ivile5euhnp2fs3ia3ckam">fatcat:to53ivile5euhnp2fs3ia3ckam</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170921230757/http://www-db.deis.unibo.it/%7Efgrandi/papers/BIOSTEC10.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/46/34/4634932e9fda14a8c13840dbde30456d17a087d2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-18472-7_5"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Towards symbiosis in knowledge representation and natural language processing for structuring clinical practice guidelines

Chunhua Weng, Philip R O Payne, Mark Velez, Stephen B Johnson, Suzanne Bakken
<span title="">2014</span> <i title="IOS Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4ju2ftoebbcvrjj6lqnnbh42wq" style="color: black;">Studies in Health Technology and Informatics</a> </i> &nbsp;
The successful adoption by clinicians of evidence-based clinical practice guidelines (CPGs) contained in clinical information systems requires efficient translation of free-text guidelines into computable  ...  In response to this challenge, this vision paper discusses the value and feasibility of supporting symbiosis in text-based knowledge acquisition (KA) and KR.  ...  Similarly, rather than fully capturing the semantics of clinical research eligibility criteria directly in a formal language, Sim et al. used an annotation approach to leverage NLP to convert free-text  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24943582">pmid:24943582</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4445724/">pmcid:PMC4445724</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/niaymecnlzepldlyfmzjnj7s24">fatcat:niaymecnlzepldlyfmzjnj7s24</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200507132831/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC4445724&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d2/5e/d25ed54de4aad27e86720d47b5dd7ee3764f3e63.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4445724" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A semantic wiki for editing and sharing decision guidelines in oncology

Thomas Meilender, Jean Lieber, Fabien Palomares, Gilles Herengt, Nicolas Jay
<span title="">2012</span> <i title="IOS Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4ju2ftoebbcvrjj6lqnnbh42wq" style="color: black;">Studies in Health Technology and Informatics</a> </i> &nbsp;
Semantic wikis allow online collaborative work and manage semantic annotations which can be reused automatically to bring new services.  ...  This paper presents ONCOLOGIK, a semantic wiki approach for local oncology guideline editing.  ...  Using semantic annotations Improving management of guidelines Annotations can be exploited by the SMW inline query engine.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22874223">pmid:22874223</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ivzehcbcqve23g6eods75i2dva">fatcat:ivzehcbcqve23g6eods75i2dva</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180209154959/https://hal.inria.fr/hal-00736711/document" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a8/99/a899a0fcd04817ccef6fca1a16b413a252a5b8bf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a>

Identifying Condition-Action Statements in Medical Guidelines Using Domain-Independent Features [article]

Hossein Hematialam, Wlodek Zadrozny
<span title="2017-06-21">2017</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
This paper advances the state of the art in text understanding of medical guidelines by releasing two new annotated clinical guidelines datasets, and establishing baselines for using machine learning to  ...  We show the limitations and possible extensions of this work on text mining of medical guidelines.  ...  Conclusions and Future Work We investigated the problem of automated extraction of condition-action from clinical guidelines based on an annotated corpus.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1706.04206v2">arXiv:1706.04206v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rqy7wd5tjze6febzi2jfha7h2a">fatcat:rqy7wd5tjze6febzi2jfha7h2a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191018103538/https://arxiv.org/pdf/1706.04206v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8d/ed/8ded7630c001bc408ab0ae94940437a8143cdd98.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1706.04206v2" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Methodology to develop and evaluate a semantic representation for NLP

Jeannie Y Irwin, Henk Harkema, Lee M Christensen, Titus Schleyer, Peter J Haug, Wendy W Chapman
<span title="2009-11-14">2009</span> <i title="American Medical Informatics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/g6q27b56yzeupjryv6lby2r2pa" style="color: black;">AMIA Annual Symposium Proceedings</a> </i> &nbsp;
documents and (2) iteratively evaluate and evolve the representation while developing annotation guidelines.  ...  The objective of this paper is to describe a methodology for creating a semantic representation for information that will be automatically extracted from textual clinical records.  ...  Our method is similar to Roberts and colleagues 8 who compiled an annotated corpus of clinical reports, trained annotators on a semantic network they developed and iteratively evaluated agreement.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20351863">pmid:20351863</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2815383/">pmcid:PMC2815383</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/p6ujxlkcnbelhmdatykwl2p2me">fatcat:p6ujxlkcnbelhmdatykwl2p2me</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200208185721/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC2815383&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/25/7b/257bc5cf5395c4e4563590dec6787fc2d2123ea4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815383" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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