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Segregating and extracting overlapping data points in two-dimensional plots

William Browuer, Saurabh Kataria, Sujatha Das, Prasenjit Mitra, C. Lee Giles
2008 Proceedings of the 8th ACM/IEEE-CS joint conference on Digital libraries - JCDL '08  
The proposed algorithm identifies a 2-D plot and extracts the axis labels, legend and the data points from the 2-D plot. We also segregate overlapping shapes that correspond to different data points.  ...  We propose a framework based on image analysis and machine learning to extract information from 2-D plot images and store them in a database.  ...  To extract data precisely from figures in digital documents, one must segregate the overlapping shapes and identify the shape and the center of mass of each overlapping data point.  ... 
doi:10.1145/1378889.1378936 dblp:conf/jcdl/BrowuerKDMG08 fatcat:6rm6dtxd75he5jprpvd34lattu

Automatic Identification and Data Extraction from 2-Dimensional Plots in Digital Documents [article]

William Brouwer, Saurabh Kataria, Sujatha Das, Prasenjit Mitra, C. L. Giles
2008 arXiv   pre-print
The proposed algorithm identifies a 2-D plot and extracts the axis labels, legend and the data points from the 2-D plot. We also segregate overlapping shapes that correspond to different data points.  ...  We propose a framework based on image analysis and machine learning to extract information from 2-D plot images and store them in a database.  ...  To extract data precisely from figures in digital documents, one must segregate the overlapping shapes and identify the shape and the center of mass of each overlapping data point.  ... 
arXiv:0809.1802v1 fatcat:dxeuw7aukbb3bn5xq523v6nfbe

Blind Decomposition of Spectral Imaging Microscopy: A Study on Artificial and Real Test Data [chapter]

Fabian J. Theis, Richard Neher, Andre Zeug
2009 Lecture Notes in Computer Science  
In this contribution we analyze the algorithm on two very well controlled real data sets. In the first case, known sources are artificially mixed in varying mixing conditions.  ...  In the second case, fluorescent beads are used to generate well behaved mixing situations. In both cases we can successfully extract the original sources.  ...  Here the superposition of dyes can be nicely found in the projection: Data points are not only found at the corners of the simplex, but also at the middle of the sides for data points with two dyes, and  ... 
doi:10.1007/978-3-642-00599-2_69 fatcat:x7uv2asnjnabdi5xent77ixtyy

Automated analysis of images in documents for intelligent document search

Xiaonan Lu, Saurabh Kataria, William J. Brouwer, James Z. Wang, Prasenjit Mitra, C. Lee Giles
2009 International Journal on Document Analysis and Recognition  
Then, an integrated algorithm is used to extract numerical data from data points and lines in the 2-D plot images along with the axes and their labels, the data symbols in the figure's legend and their  ...  Authors use images to present a wide variety of important information in documents. For example, two-dimensional (2-D) plots display important data in scientific publications.  ...  Acknowledgments This work was supported in part by the US National Science Foundation under grants 0535656, 0347148, 0454052, and 0202007, Microsoft Research, and Internet Archive.  ... 
doi:10.1007/s10032-009-0081-0 fatcat:myywoqxytnhfhhw44zkprz73cm

Network Architecture of Embryo Developmental Regulation (NetSci 2017) [article]

Bradly Alicea, Richard Gordon
2017 Figshare  
Indianapolis, IN USA.  ...  Upon differentiation, d 0 → m 0 and m 0 in turn gives rise to two daughters, d 00 and d 01 .  ...  75.2% Number of cliques without overlap 15.4% 9.4% Circular plot for 16 terminal-cell condition, threshold of 0.25.  ... 
doi:10.6084/m9.figshare.5080117.v1 fatcat:bvwpzhrbnzafzlq6zztizve5ua

Disentangling co-occurrence patterns in n-partite ecosystems [article]

Albert Solé-Ribalta, Claudio J. Tessone, Carlo G. Ferrari, Javier Borge-Holthoefer
2018 arXiv   pre-print
The need to harmonise apparently irreconcilable arrangements in an ecosystem --nestedness and segregation-- has triggered so far different strategies.  ...  Here we question this partial-view paradigm, and show that nestedness and segregation may coexist across a varied range of scenarios.  ...  are in place (segregation in the G P L and G AL projections).  ... 
arXiv:1807.04666v1 fatcat:kedsnrwcbvdzro7kh4juw3o76u

Quantitative Analysis of Cotton Canopy Size in Field Conditions Using a Consumer-Grade RGB-D Camera

Yu Jiang, Changying Li, Andrew H. Paterson, Shangpeng Sun, Rui Xu, Jon Robertson
2018 Frontiers in Plant Science  
one-dimensional traits, and the multivariate trait (cumulative height profile) outperformed univariate traits.  ...  The proposed approach would be useful for identification of quantitative trait loci (QTLs) controlling canopy size in genetics/genomics studies or for fiber yield prediction in breeding programs and production  ...  ; YJ, CL, AP, SS, and RX analyzed the data; AP and CL provided plant materials, instruments, and computing resources used in the study; YJ, CL, and AP contributed to writing the manuscript.  ... 
doi:10.3389/fpls.2017.02233 pmid:29441074 pmcid:PMC5797632 fatcat:2dq2kzomm5hjnfobqfng7jetye

Transgressive segregation of primary and secondary metabolites in F2 hybrids between Jacobaea aquatica and J. vulgaris

Heather Kirk, Dandan Cheng, Young Hae Choi, Klaas Vrieling, Peter G. L. Klinkhamer
2011 Metabolomics  
This study aims to provide evidence of transgressive segregation in the expression of primary and secondary metabolites in hybrids between Jacobaea vulgaris and J. aquaticus using an NMR-based metabolomic  ...  Expression of a number of primary and secondary metabolites, including jacaronone analogues, chlorogenic acid, sucrose, glucose, malic acid, and two amino acids was extreme in some F 2 hybrid genotypes  ...  Thus for NMR data, loading plots can be used to detect the spectral regions and their corresponding metabolites responsible for the separation in the data.  ... 
doi:10.1007/s11306-011-0301-8 pmid:22448153 pmcid:PMC3291818 fatcat:om5roi4jajapfp5zwcblp2kkly

Automated three-dimensional single cell phenotyping of spindle dynamics, cell shape, and volume [article]

Kemp Plumb, Sarah Elaz, Vincent Pelletier, Maria L. Kilfoil
2015 arXiv   pre-print
We developed a computational imaging hybrid approach that combines automated three-dimensional tracking of point-like features with surface determination from which cell (or nuclear) volume, shape, and  ...  These methods are additionally useful for automated segregation of pre-anaphase and anaphase spindle populations in budding yeast.  ...  Dey, Department of Computer Science and Engineering, Ohio State University for providing us surface mesh generation software, and Dr. Jeffrey N.  ... 
arXiv:1504.00714v1 fatcat:u23d4byqn5ftrdxddri4or5gqy

Monte Carlo simulations of segregation at [001] twist boundaries in a Pt(Au) alloy—II. Discussion

A. Seki, D.N. Seidman, Y. Oh, S.M. Foiles
1991 Acta Metallurgica et Materialia  
presence of a hill-and-valley structure in the Au segregation behavior at 850 K.  ...  All the Monte Carlo results can be plotted on a single Arrhenius plot and the Gibbs free binding energy of a Au atom to the cores of the primary grain boundary dislocations extracted; the binding enthalpy  ...  SUMMARY AND CONCLUSIONS I. A three-dimensional plot (Fig.  ... 
doi:10.1016/0956-7151(91)90052-3 fatcat:5a66imioyvdtbcpt2p3hb7kvcq

Musical instrument identification using Principal Component Analysis and Multi-Layered Perceptrons

Roisin Loughran, Jacqueline Walker, Michael O'Neill, Marion O'Farrell
2008 2008 International Conference on Audio, Language and Image Processing  
These features are reduced using Principal Component Analysis and the resultant data is used to train a Multi-Layered Perceptron.  ...  This study aims to create an automatic musical instrument classifier by extracting audio features from real sample sounds.  ...  The violin and flute samples also segregate, but there is some overlap between the two. Hence another feature is needed to distinguish these instruments distinctly.  ... 
doi:10.1109/icalip.2008.4590236 fatcat:nnriywlrdvcvfcn3i42tkqhtpa

Functional and structural segregation of overlapping helices in HIV-1

Maliheh Safari, Bhargavi Jayaraman, Shumin Yang, Cynthia Smith, Jason D Fernandes, Alan D Frankel
2022 eLife  
We use a combination of sequence analysis, functional assays and selection experiments to examine an overlapped region in HIV-1 that encodes helical regions in both Env and Rev.  ...  We find that functional segregation occurs even in this overlap, with each protein spacing its functional residues in a manner that allows a mutable non-binding face of one helix to encode important functional  ...  This work was supported by NIH grant P50AI150476, and MS was supported in part by NIH training grant T32AI0605357.  ... 
doi:10.7554/elife.72482 pmid:35511220 fatcat:piampo6iv5fu3ctzh3dm32f5aa

Uniform Manifold Approximation and Projection for Clustering Taxa through Vocalizations in a Neotropical Passerine (Rough-Legged Tyrannulet, Phyllomyias burmeisteri)

Ronald M. Parra-Hernández, Jorge I. Posada-Quintero, Orlando Acevedo-Charry, Hugo F. Posada-Quintero
2020 Animals  
The results achieved with UMAP in this study suggest that the technique can be useful in the analysis of species with complex in taxonomy through vocalizations data as a complementary tool including behavioral  ...  UMAP exhibited a clearer separation of groups than previously used dimensionality-reduction techniques (i.e., principal component analysis), as it was able to effectively identify the two taxa groups.  ...  Acknowledgments: We thank Matthew Medler at the Cornell Lab of Ornithology for his assistance in providing sounds from Macaulay Library.  ... 
doi:10.3390/ani10081406 pmid:32806680 pmcid:PMC7460062 fatcat:5ksb2h5kyvcp5l5d6efobyjv54

Gases, liquids and crystals in granular segregation

P. M Reis, G Ehrhardt, A Stephenson, T Mullin
2004 Europhysics letters  
Finally, we draw some analogies between segregation in our granular system and self-assembly in binary colloidal mixtures.  ...  We identified them as a binary gas, segregation liquid and segregation crystal and provide both microscopic and macroscopic measures to identify their properties.  ...  A reasonable approximation to a two-dimensional system was achieved, as only a small degree of overlap of the poppy seeds occurred.  ... 
doi:10.1209/epl/i2003-10210-4 fatcat:d6w62jivwbb4vfknmalrmkaoie

Classification of test agent-specific effects in the Syrian hamster embryo assay (pH 6.7) using infrared spectroscopy with computational analysis

A. A. Ahmadzai, J. Trevisan, W. Pang, I. I. Patel, N. J. Fullwood, S. W. Bruce, K. Pant, P. L. Carmichael, A. D. Scott, F. L. Martin
2012 Mutagenesis  
The assay uses morphological transformation as an end point and has a reported sensitivity of 87%, specificity of 83% and overall concordance of 85% with in vivo rodent bioassay data.  ...  Resultant data were analysed using Fisher's linear discriminant analysis and feature histogram algorithms to extract classifying biomarkers of test agent-specific effects or transformation in SHE cells  ...  LDA scatter plots show segregation between the spectral points derived from transformed and non-transformed colonies with some overlap in each case.  ... 
doi:10.1093/mutage/ges003 pmid:22362182 fatcat:yecmuejeyreb5cw25tum5rmsby
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