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Segmentation of Microarray Images by Mathematical Morphology

Roberto Hirata, Junior Barrera, Ronaldo F. Hashimoto, Daniel O. Dantas, Gustavo H. Esteves
<span title="">2002</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hlkyezivsbds3cpzqorraoqgli" style="color: black;">Real-time imaging</a> </i> &nbsp;
In this paper, we present a technique based on mathematical morphology that performs this segmentation.  ...  ., microarrays) biotechnology is a hybridization (i.e., matching of pairs of DNA)-based process that makes possible to quantify the relative abundance of mRNA of two distinct samples by analyzing their  ...  This technique has been implemented in MATLAB (www.mathworks.com), using the MMORPH toolbox for mathematical morphology (www.mmorph.com), and tested with microarray images of several makers.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1006/rtim.2002.0291">doi:10.1006/rtim.2002.0291</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/satpjbblybg3xne22td5qgab5e">fatcat:satpjbblybg3xne22td5qgab5e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20050319233156/http://www.ene.unb.br:80/%7Ejuliana/cursos/pimagens2/papers/robertohirata02.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4b/90/4b908f54e753dfd389225c1a521073f86f78ff22.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1006/rtim.2002.0291"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

An Improved Iterative Watershed and Morphological Transformation Techniques for Segmentation of Microarray Images

A.Sri Nagesh, Dr.G.P.S. Varma, Dr A Govardhan
<span title="2010-08-20">2010</span> <i title="Foundation of Computer Science"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/b637noqf3vhmhjevdfk3h5pdsu" style="color: black;">International Journal of Computer Applications</a> </i> &nbsp;
This article proposes a methodology to investigate the accuracy of spot segmentation of a microarray image, using morphological image analysis techniques, watershed algorithm and iterative watershed algorithm  ...  The effect of different segmentation methods on the variability of data derived from microarray images has been overlooked.  ...  Lossless spot segmentation and quantification of spot shape variability can be achieved by means of mathematical morphology methods.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5120/1002-37">doi:10.5120/1002-37</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/alddvyynvngahox7bybbzaf2gm">fatcat:alddvyynvngahox7bybbzaf2gm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180602232658/https://www.ijcaonline.org/casct/number2/SPE37T.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c9/23/c92383d7ebfa037f1cc9c9090e9fa9ce6247fa71.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5120/1002-37"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

MICROARRAY SPOT DETECTION USING FLAT STRUCTURING PERIODIC LINE AND SPECIFIC DISTANCE SHAPED MORPHOLOGY
English

Kadam AB, Manza RR, Kale KV
<span title="2009-12-30">2009</span> <i title="Bioinfo Publications"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/no45whp52jcq3nkygsb3awuuo4" style="color: black;">International Journal of Machine Intelligence</a> </i> &nbsp;
Microarray image grid and spot position determination is a very important step in the analysis of microarray image because it is the first part we need to do for the analysis.  ...  So we consider this as indeed problem of spot detection and overcome it by using flat structuring element disk-diamond shaped morphological technique, which gives satisfied results.  ...  Proposed Algorithm for Morphological Microarray Image segmentation No Input (Raw Microarray Image) Preprocessing (S.E.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.9735/0975-2927.1.2.5-9">doi:10.9735/0975-2927.1.2.5-9</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/czarlctyrfb4vlvfs4gmnkxzmy">fatcat:czarlctyrfb4vlvfs4gmnkxzmy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160408150012/http://manzaramesh.in/Publication/All%20Research%20Paper/Novel%20approach%20for%20microarray%20segmentation%20using%20two%20shaped%20flat%20structuring%20periodic%20line%20and%20specific%20distance%20shaped%20morphology.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/27/94/27947278280a2fbc169e1ba6208dc35d1fa6cfb0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.9735/0975-2927.1.2.5-9"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Automatic analysis of DNA microarray images using mathematical morphology

J. Angulo, J. Serra
<span title="2003-03-22">2003</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
Initially, a gridding algorithm yields the automatic segmentation of the microarray image into spot quadrants which are later individually analysed.  ...  Image analysis is an important aspect of microarray experiments. The aim of this step is to reduce an image of spots into a table with a measure of the intensity for each spot.  ...  ACKNOWLEDGEMENTS The authors would like to thank Ana Dopazo of CNIO, Madrid, Spain, and Nicolas Ugolin of CEA, France, for providing the images used in this study.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btg057">doi:10.1093/bioinformatics/btg057</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12651712">pmid:12651712</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/465y4zsw6rddxlfu3f3hx5fsxq">fatcat:465y4zsw6rddxlfu3f3hx5fsxq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808043140/http://staff.fh-hagenberg.at/wbackfri/Teaching/BioWeb/AnguloSerra03.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b9/64/b964aaaafc39a216b2013b329148a0860ce377ae.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btg057"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Gridding and Segmentation Method for DNA Microarray Images

B. Sivalakshmi, N.Naga Malleswara Rao
<span title="2021-04-11">2021</span> <i title="Auricle Technologies, Pvt., Ltd."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/53g4hcectze5tdtddjgryyqzvi" style="color: black;">Turkish Journal of Computer and Mathematics Education</a> </i> &nbsp;
This article mainly explores meshing and segmentation techniques for microarray image analysis.  ...  Qualitative and quantitative analysis shows that the algorithm can perform grid processing on microarray images well, and improves the performance of the clustering algorithm.  ...  Morphology based segmentation [7] , uses the morphological operations such as hit or miss transforms to segment the image.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.17762/turcomat.v12i5.1060">doi:10.17762/turcomat.v12i5.1060</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wbhdggtd4bembbj6zdu37dqhme">fatcat:wbhdggtd4bembbj6zdu37dqhme</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210428200738/https://turcomat.org/index.php/turkbilmat/article/download/1060/848" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ab/30/ab30cd076e33960ffc73e6680a11bcecadcfd57d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.17762/turcomat.v12i5.1060"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Spot Edge Detection in Microarray Images Using Bi-Dimensional Empirical Mode Decomposition

J. Harikiran, Y. NarasimhaRao, B. Saichandana, P.V. Lakshmi, R. Kiran Kumar
<span title="">2012</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kcayf4mk7zbrbhvdwizgrxaruu" style="color: black;">Procedia Technology - Elsevier</a> </i> &nbsp;
The DNA microarray image analysis includes three tasks: gridding, segmentation and intensity extraction.  ...  During the processing of microarray images, the irregularities of spot position and shape could generate significant errors.  ...  After performing mathematical morphology operations for removal of isolated points and to replace thin lines with thick lines on the black and white image, the final spot edge image is obtained.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.protcy.2012.05.034">doi:10.1016/j.protcy.2012.05.034</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/uikdwc5is5bkpn55ks6yuf2xsm">fatcat:uikdwc5is5bkpn55ks6yuf2xsm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170928034421/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/5e0/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMjIxMjAxNzMxMjAwMzEzMQ%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/10/f3/10f35ffb3aef8c94a1a8c98cc87e4eb42b135f2a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.protcy.2012.05.034"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Automatic analysis of microRNA Microarray images using Mathematical Morphology

Felix Meyenhofer, Olivier Schaad, Patrick Descombes, Michel Kocher
<span title="">2007</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4jz775kb7vdlro6pjxr5235ezm" style="color: black;">IEEE Engineering in Medicine and Biology Society. Conference Proceedings</a> </i> &nbsp;
The micro array are an experimental technique for parallel determination of molecular concentration. The image analysis is an important, time consuming and error prone step of the process.  ...  We describe here an automatic procedure able to analyze the micro array data and to accurately provide the level of concentration for each microRNA (miRNA).  ...  Acknowledgment The Authors thank Prof Walter Reith, Dr Isabelle Dunant, and Dr Mylene Doquier for providing microarrays data.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/iembs.2007.4353780">doi:10.1109/iembs.2007.4353780</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18003446">pmid:18003446</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rs6ltviuqrcevozqvhbrr3c2we">fatcat:rs6ltviuqrcevozqvhbrr3c2we</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809085619/http://bigwww.epfl.ch/publications/meyenhofer0701.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ed/ee/edeec6d42a7a1b6b9ff37ae23ab13daf01b75979.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/iembs.2007.4353780"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

A Pattern Classification Approach to DNA Microarray Image Segmentation [chapter]

Luis Rueda, Juan Carlos Rojas
<span title="">2009</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
The results obtained on various microarray images show that the proposed technique is quite promising for segmentation of DNA microarray images, obtaining a very high accuracy on background and noise separation  ...  A new method for DNA microarray image segmentation based on pattern recognition techniques is introduced.  ...  Histogram-based methods and mathematical morphology have also been applied to microarray image segmentation [6] [7] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-04031-3_28">doi:10.1007/978-3-642-04031-3_28</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/krb4e5jerff43jiykebqoy2gca">fatcat:krb4e5jerff43jiykebqoy2gca</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190501190245/https://link.springer.com/content/pdf/10.1007%2F978-3-642-04031-3_28.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d8/1e/d81eafd327896e6d693eea418e1505d12d5227e3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-04031-3_28"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

POLAR MODELLING AND SEGMENTATION OF GENOMIC MICROARRAY SPOTS USING MATHEMATICAL MORPHOLOGY

Jesús Angulo
<span title="2011-05-03">2011</span> <i title="Slovenian Society for Stereology and Quantitative Image Analysis"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3sdgkbxhvbbrzegutwnwbzczau" style="color: black;">Image Analysis and Stereology</a> </i> &nbsp;
This paper deals with the development of model-based image processing algorithms for qualifying/segmenting/quantifying adaptively each spot according to its morphology.  ...  Robust image analysis of spots in microarrays (quality control + spot segmentation + quantification) is a requirement for automated software which is of fundamental importance for a high-throughput analysis  ...  This work is part of the French Project GEMBIO-Bioinformatique 2003  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5566/ias.v27.p107-124">doi:10.5566/ias.v27.p107-124</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qk2k6xgg55dobdn5epvw5e5ek4">fatcat:qk2k6xgg55dobdn5epvw5e5ek4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190323113121/https://core.ac.uk/download/pdf/51226528.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/72/14/721435f8fc2986d06337a4c2d695e483f462eeb3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5566/ias.v27.p107-124"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Microarray spot partitioning by autonoumsly organising maps thorugh contour model

Karthik S. A., Manjunath S. S.
<span title="2020-02-01">2020</span> <i title="Institute of Advanced Engineering and Science"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sdt65w3c4jeojd2d4wr6rbkebe" style="color: black;">International Journal of Electrical and Computer Engineering (IJECE)</a> </i> &nbsp;
In cDNA microarray image analysis, classification of pixels as forefront area and the area covered by background is very challenging.  ...  From the review of experimental work, presented approach is accurate over the approaches like C-means by fuzzy, Morphology sectionalization.  ...  Existing segmentation [4] [5] [6] [7] [8] (partition of the forefront area from the entire image) methodologies are categorised as ring fixed0 segmentation, adaptation ring segmentation, morphological  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11591/ijece.v10i1.pp746-756">doi:10.11591/ijece.v10i1.pp746-756</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vt4lcxceyzbetkkyj6fig327pq">fatcat:vt4lcxceyzbetkkyj6fig327pq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200215114919/http://ijece.iaescore.com/index.php/IJECE/article/download/20211/pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/66/b4/66b44aa6648387e5657c16129cfdb67fff2e0dd8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11591/ijece.v10i1.pp746-756"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

A Combinational Clustering Based Method for cDNA Microarray Image Segmentation

Guifang Shao, Tiejun Li, Wangda Zuo, Shunxiang Wu, Tundong Liu, Shu-Dong Zhang
<span title="2015-08-04">2015</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
Microarray technology plays an important role in drawing useful biological conclusions by analyzing thousands of gene expressions simultaneously.  ...  Especially, image analysis is a key step in microarray analysis and its accuracy strongly depends on segmentation.  ...  Morphology-based techniques combine the mathematical morphology operations to realize the spot detection [15, 26, [30] [31] , yet the structure element is designed humanly and the segmentation effect  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0133025">doi:10.1371/journal.pone.0133025</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26241767">pmid:26241767</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4524615/">pmcid:PMC4524615</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pdnqqrixlnckbdnrusmkoxczxy">fatcat:pdnqqrixlnckbdnrusmkoxczxy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171011012356/http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0133025&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ab/eb/abeb7b20c8e1bbedaa6cf52950c3c64000f536ff.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0133025"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524615" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Spot defects detection in cDNA microarray images

Mónica G. Larese, Pablo M. Granitto, Juan C. Gómez
<span title="2011-08-12">2011</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/at6h2du27zgp5hrmgtzl2rteea" style="color: black;">Pattern Analysis and Applications</a> </i> &nbsp;
This is achieved by means of applying the generalized Hough transform on the 2D autocorrelation function previously segmented via morphological operations.  ...  The large amount of information provided by microarray images requires automatic techniques to develop accurate and efficient processing.  ...  Instead of using the raw autocorrelation image, this image is previously segmented by means of morphological binary operations and connected components detection.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10044-011-0234-x">doi:10.1007/s10044-011-0234-x</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/utpihm67qnd2zpqig2k53zup34">fatcat:utpihm67qnd2zpqig2k53zup34</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170817004323/http://sedici.unlp.edu.ar/bitstream/handle/10915/9625/Documento_completo.pdf?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/95/12/95128a5329d09c5a2481b6b1b1becf7d6c5323f0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10044-011-0234-x"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

An Overview of DNA Microarray Grid Alignment and Foreground Separation Approaches

Peter Bajcsy
<span title="2006-04-20">2006</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hqblpsydr5emviirtqkkmctpha" style="color: black;">EURASIP Journal on Advances in Signal Processing</a> </i> &nbsp;
Microarray grid alignment and foreground separation are the basic processing steps of DNA microarray images that affect the quality of gene expression information, and hence impact our confidence in any  ...  Challenges related to automation and reliability of processed image data are outlined at the end of this overview paper.  ...  Morphological segmentation by watershed transformation is based on image operators derived from mathematical morphology [42] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/asp/2006/80163">doi:10.1155/asp/2006/80163</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ennacwyq5jdpvmfpuzep7a6vzy">fatcat:ennacwyq5jdpvmfpuzep7a6vzy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171025225609/https://core.ac.uk/download/pdf/22872088.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2d/e3/2de3777e8367959cf0512e428b3ced275f951b31.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/asp/2006/80163"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> hindawi.com </button> </a>

Cellular Neural Networks, the Navier–Stokes Equation, and Microarray Image Reconstruction

Bachar Zineddin, Zidong Wang, Xiaohui Liu
<span title="">2011</span> <i title="Institute of Electrical and Electronics Engineers (IEEE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dhlhr4jqkbcmdbua2ca45o7kru" style="color: black;">IEEE Transactions on Image Processing</a> </i> &nbsp;
Although the last decade has witnessed a great deal of improvements achieved for the microarray technology, many major developments in all the main stages of this technology, including image processing  ...  Some hardware implementations of microarray image processing have been proposed in the literature and proved to be promising alternatives to the currently available software systems.  ...  These supervised orderings may then be used for the extension of mathematical morphology to vector images.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/tip.2011.2159231">doi:10.1109/tip.2011.2159231</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21659025">pmid:21659025</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xi2x2l45ljgqzpwv2sxoexzgbu">fatcat:xi2x2l45ljgqzpwv2sxoexzgbu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808225222/http://v-scheiner.brunel.ac.uk/bitstream/2438/5959/3/Fulltext.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d6/64/d664d489335465f927561a385fb33caf63b3db68.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/tip.2011.2159231"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Cellular Neural Networks, Navier-Stokes equation and microarray image reconstruction

Bachar Zineddin, Zidong Wang, Xiaohui Liu
<span title="">2010</span> <i title="IEEE"> 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) </i> &nbsp;
Although the last decade has witnessed a great deal of improvements achieved for the microarray technology, many major developments in all the main stages of this technology, including image processing  ...  Some hardware implementations of microarray image processing have been proposed in the literature and proved to be promising alternatives to the currently available software systems.  ...  These supervised orderings may then be used for the extension of mathematical morphology to vector images.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/bibmw.2010.5703805">doi:10.1109/bibmw.2010.5703805</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hoyaienuivgunk7v3eyqgkh3iy">fatcat:hoyaienuivgunk7v3eyqgkh3iy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808225222/http://v-scheiner.brunel.ac.uk/bitstream/2438/5959/3/Fulltext.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d6/64/d664d489335465f927561a385fb33caf63b3db68.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/bibmw.2010.5703805"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>
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