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Search for Computational Workflow Synergies in Reproducible Research Data Analyses in Particle Physics and Life Sciences

Tibor Simko, Kyle Cranmer, Michael R. Crusoe, Lukas Heinrich, Anton Khodak, Dinos Kousidis, Diego Rodriguez
2018 2018 IEEE 14th International Conference on e-Science (e-Science)  
ACKNOWLEDGMENT The CWL integration with the REANA platform was partially supported by the United States' National Science Foundation grant PHY-1247316 "Data and Software Preservation for Open Science"  ...  The present work paves the way towards reproducible science synergies in particle physics and life sciences.  ...  This integration allowed us to study the applicability of CWL to particle physics analyses and look for synergies in computational practices in the two communities.  ... 
doi:10.1109/escience.2018.00123 dblp:conf/eScience/SimkoCCHKKR18 fatcat:5lwbmlcm75dbdfysth4b6kxh4e

REANA: A System for Reusable Research Data Analyses

Tibor Šimko, Lukas Heinrich, Harri Hirvonsalo, Dinos Kousidis, Diego Rodríguez, A. Forti, L. Betev, M. Litmaath, O. Smirnova, P. Hristov
2019 EPJ Web of Conferences  
REANA was developed with the particle physics use case in mind and profits from synergies with general reusable research data analysis patterns in other scientific disciplines, such as bioinformatics and  ...  life sciences.  ...  by observing and evolving the current analysis practices existing in the HEP community and by leveraging the progress made in related computational science disciplines (astronomy, life sciences) and with  ... 
doi:10.1051/epjconf/201921406034 fatcat:kav4qfrm7vdoxd7dobufrhzcuy

PUNCH4NFDI Consortium Proposal

The PUNCH4NFDI Consortium
2020 Zenodo  
The PUNCH4NFDI consortium bundles numerous efforts in data management of the communities of particle physics, astroparticle physics, hadron & nuclear physics, and astronomy.  ...  Organised in 7 task areas, the consortium ultimately aims at establishing FAIR digital research products for its communities and beyond, spending their entire lifecycle inside a "science data platform"  ...  Frankfurt Institute for Advanced Studies (FIAS) is an independent research institute performing cutting-edge research in the areas life science, physics, neuroscience, computer science and systemic risk  ... 
doi:10.5281/zenodo.5722894 fatcat:mfcvk55kqvgsthkp6dnxqyiyve

ESFRI Science Clusters Position Statement on Expectations and Long-Term Commitment in Open Science [article]

Giovanni Lamanna, Ian Bird, Andreas Petzold, Ari Asmi, Magdalena Brus, Niklas Blomberg, Michael Räß, Rudolf Dimper, Andrew Gotz, Ron Dekker
2021 Zenodo  
The main impacts of the Science Clusters' work programme concern: the improved access of researchers to data, tools and resources, leading to new insights and innovation for data-driven science both within  ...  for economies of scale, to develop synergies and rise the efficiency and productivity of researchers through open-science standards and thematic services; the enhanced co-developments to foster the cross-domain  ...  During the COVID-19 pandemic EOSC-life provide tools and workflows to tackle analyses of COVID-related data in an open and reproducible way.  ... 
doi:10.5281/zenodo.4892245 fatcat:vvv2psdnzzh3lnqh66262gpryi

ESFRI Science Clusters Position Statement on Expectations and Long-Term Commitment in Open Science [article]

Giovanni Lamanna, Ian Bird, Andreas Petzold, Ari Asmi, Magdalena Brus, Niklas Blomberg, Rudolf Dimper, Andrew Gotz, Ron Dekker
2021 Zenodo  
The main impacts of the Science Clusters' work programme concern: the improved access of researchers to data, tools and resources, leading to new insights and innovation for data-driven science both within  ...  for economies of scale, to develop synergies and rise the efficiency and productivity of researchers through open-science standards and thematic services; the enhanced co-developments to foster the cross-domain  ...  During the COVID-19 pandemic EOSC-life provide tools and workflows to tackle analyses of COVID-related data in an open and reproducible way.  ... 
doi:10.5281/zenodo.4889503 fatcat:4siswjjjjjdzvphx3yfuouuaja

ESFRI Science Clusters Position Statement on Expectations and Long-Term Commitment in Open Science [article]

Giovanni Lamanna, Ian Bird, Andreas Petzold, Ari Asmi, Magdalena Brus, Niklas Blomberg, Michael Räß, Rudolf Dimper, Andrew Gotz, Ron Dekker
2021 Zenodo  
The main impacts of the Science Clusters' work programme concern: the improved access of researchers to data, tools and resources, leading to new insights and innovation for data-driven science both within  ...  for economies of scale, to develop synergies and rise the efficiency and productivity of researchers through open-science standards and thematic services; the enhanced co-developments to foster the cross-domain  ...  During the COVID-19 pandemic EOSC-life provide tools and workflows to tackle analyses of COVID-related data in an open and reproducible way.  ... 
doi:10.5281/zenodo.4892143 fatcat:f4tghft73renffwvq4hkrkor6u

ESFRI cluster projects - Position papers on expectations and planned contributions to the EOSC [article]

Andy Gotz, Andreas Petzold, Ari Asmi, Niklas Blomberg, Giovanni Lamanna, Ron Dekker
2020 Zenodo  
The ESFRI cluster projects were launched in 2019 in order to implement interfaces to integrate computer and data management solutions, to create cross-border and open cooperation spaces and to promote  ...  The European Open Science Cloud (EOSC) initiative already has a high impact on structured access to Open Data and with the current funding by the European Commission of implementation projects, the interdisciplinary  ...  sciences, environmental sciences, social sciences and humanities, photon and neutron sciences, and astronomy and particle physics.  ... 
doi:10.5281/zenodo.3675080 fatcat:xmn2ubpgejfbpnsgb4irsbtldi

Automatic Hypothesis Checking Using eScience Research Infrastructures, Ontologies, and Linked Data: A Case Study in Climate Change Research

Jaakko Lappalainen, Miguel-Ángel Sicilia, Bernabé Hernández
2013 Procedia Computer Science  
of automated "executable research" that uses computational resources for continuously running exploratory hypotheses.  ...  The increasing detail of our science triggers the trend of Big Data, and introduces new challenges on managing and processing that information.  ...  In this scenario, agINFRA provides powerful computation and rich semantics to support traditional scientific workflows for natural sciences.  ... 
doi:10.1016/j.procs.2013.05.283 fatcat:qtiq6gno2fgarl6b5idpo6ocmy

Report on the ECFA Early-Career Researchers Debate on the 2020 European Strategy Update for Particle Physics [article]

N. Andari, L. Apolinário (LIP, Lisbon, Portugal), K. Augsten , E. Bakos, I. Bellafont (CELLS-ALBA, Cerdanyola del Vallès, Spain), L. Beresford (The University of Oxford, United Kingdom), A. Bethani (Université catholique de Louvain, Louvain-la-Neuve, Belgium), J. Beyer, L. Bianchini, B. Bilin (+210 others)
2020 arXiv   pre-print
During the debate, the ECRs discussed future colliders in terms of the physics prospects, their implications for accelerator and detector technology as well as computing and software.  ...  Physics and to summarise the outcome in a brief document [1].  ...  In addition, particle physics should play an exemplary role for sustainable behaviour, being inspirational for both society and other sciences.  ... 
arXiv:2002.02837v1 fatcat:exih2avntrhgzgygadi3e75zla

Strategic Plan for a Scientific Software Innovation Institute (S2I2) for High Energy Physics [article]

Peter Elmer, Mark Neubauer, Michael D. Sokoloff
2018 arXiv   pre-print
The primary science goal is to search for physics beyond the SM and, should it be discovered, to study its details and implications.  ...  A commensurate investment in R&D for the software for acquiring, managing, processing and analyzing HL-LHC data will be critical to maximize the return-on-investment in the upgraded accelerator and detectors  ...  The LHC was designed to search for the Higgs boson and for BSM physics -goals in the realm of discovery science.  ... 
arXiv:1712.06592v2 fatcat:gm6v2suqj5dkphccrp4bcsymau

Scientific workflows: Past, present and future

Malcolm Atkinson, Sandra Gesing, Johan Montagnat, Ian Taylor
2017 Future generations computer systems  
This special issue and our editorial celebrate 10 years of progress with data-intensive or scientific workflows.  ...  There have been very substantial advances in the representation of workflows and in the engineering of workflow management systems (WMS).  ...  We are grateful for the contributions of the authors and reviewers of this special issue and the editors of Future Generation Computing Systems.  ... 
doi:10.1016/j.future.2017.05.041 fatcat:j6ofz4kjjbdgdjmnsnj3fe63ju

ESCAPE Data Lake

Riccardo Di Maria, Rizart Dona, on behalf of the ESCAPE project, C. Biscarat, S. Campana, B. Hegner, S. Roiser, C.I. Rovelli, G.A. Stewart
2021 EPJ Web of Conferences  
The project targets Particle Physics and Astronomy facilities and research infrastructures, focusing on the development of solutions to handle Exabyte-scale datasets.  ...  The European-funded ESCAPE project (Horizon 2020) aims to address computing challenges in the context of the European Open Science Cloud.  ...  This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 824064 (ESCAPE, the European Science Cluster of Astronomy & Particle  ... 
doi:10.1051/epjconf/202125102056 fatcat:lt7kxbxyjnbujmmp6ytt2b3luu

Theoretical and technological building blocks for an innovation accelerator

F. van Harmelen, G. Kampis, K. Börner, P. van den Besselaar, E. Schultes, C. Goble, P. Groth, B. Mons, S. Anderson, S. Decker, C. Hayes, T. Buecheler (+1 others)
2012 The European Physical Journal Special Topics  
. in order to include the computer as a partner in the scientific process, and (iv) Build an online platform for collaboration, including a network of trust and reputation among the different types of  ...  monolithic paper unit and introducing other building blocks such as data, tools, experiment workflows, resources; (iii) Use machine readable semantics for publications, debate structures, provenance etc  ...  formerly time-consuming and mission-impossible searches, analyses, and insights.  ... 
doi:10.1140/epjst/e2012-01692-1 fatcat:6qsvn7rnvvd3lbhrqareffzjjy

Innovation in scholarly communication: Vision and projects from High-Energy Physics

Rolf-Dieter Heuer, Annette Holtkamp, Salvatore Mele, Arnoud de Kemp
2008 Information Services and Use  
Having always been at the forefront of information management and open access, High-Energy Physics (HEP) proves to be an ideal test-bed for innovations in scholarly communication including new information  ...  ; the design, development and deployment of an e-infrastructure for information management; and the emerging debate on long-term preservation, re-use and (open) access to HEP data.  ...  , to improve the research workflow and reduce the possibility of errors; o primary research data in the form of higher-level objects. • "Smarter" search tools, giving access to articles related to articles  ... 
doi:10.3233/isu-2008-0570 fatcat:trqifgqedreuxnqkn6krekeide

EOSC-hub D10.1 EOSC-hub Technical Roadmap v1

Giacinto Donvito
2019 Zenodo  
among the services and to enable service composition in the wider EOSC environment.  ...  It describes the capabilities, the features and the plan for the technical evolution of the services within the EOSC-hub service portfolios, with a focus on the activities needed to improve the interoperability  ...  Life Science, Astrophysics, High Energy Physics, Photon Science and Clinical Research.  ... 
doi:10.5281/zenodo.4605629 fatcat:m3mbyxzdzfeyxjodxelmhf2swm
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