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SPHN - The BioMedIT Network: A Secure IT Platform for Research with Sensitive Human Data
2020
Studies in Health Technology and Informatics
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The BioMedIT project is funded by the Swiss government as an integral part of the Swiss Personalized Health Network (SPHN), aiming to provide researchers with access to a secure, powerful and versatile ...
The BioMedIT network gives researchers the ability to securely transfer, store, manage and process sensitive research data. ...
Conclusion BioMedIT provides data resources and a network of secure data nodes for doing datadriven research on sensitive (confidential) biomedical data. ...
doi:10.3233/shti200348
pmid:32570566
fatcat:fqyjeoclybdcnfkgfhothsn6lu
SPHN - The Swiss Personalized Health Network Initiative
2020
Studies in Health Technology and Informatics
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SPHN contributes to the development, the implementation, and the validation of coordinated infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. ...
The Swiss Personalized Health Network (SPHN) is a national initiative designed to promote the development of personalized medicine and personalized health in Switzerland. ...
SPHN rallies all decision makers from key clinical, research and research support institutions around the same table. ...
doi:10.3233/shti200344
pmid:32570562
fatcat:3rqpiea3xzgxtexdds4baekwsu
DCC Terminology Service—An Automated CI/CD Pipeline for Converting Clinical and Biomedical Terminologies in Graph Format for the Swiss Personalized Health Network
2021
Applied Sciences
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One goal of the Swiss Personalized Health Network (SPHN) is to provide an infrastructure for FAIR (Findable, Accessible, Interoperable and Reusable) health-related data for research purposes. ...
To enable the integrative use of different terminologies, a terminology service is a important component of the SPHN Infrastructure for FAIR data. ...
Acknowledgments: The authors would like to thank Shubham Kapoor and the sciCORE team of the University of Basel for their support in the setup of the MinIO server. ...
doi:10.3390/app112311311
fatcat:hcbbjbhiwjhbpfb4jv2fednm6q
SwissPK cdw – A clinical data warehouse for the optimization of pediatric dosing regimens
2021
CPT: Pharmacometrics & Systems Pharmacology
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Embedded into the secure BioMedIT network, the CDW can connect to various data providers and researchers in order to collaborate on the data securely. ...
, data analysis, and web tools in a secure scientific data and information technology (IT) environment. ...
environment (Leonhard Med, 22 the data and IT platform of the BioMedIT Node Zürich). ...
doi:10.1002/psp4.12723
pmid:34729953
pmcid:PMC8673996
fatcat:66w6jdratzdyfdyf5baog5rbbe
Clinical data for paediatric research: the Swiss approach
2021
BMC Proceedings
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The Swiss Personalised Health Network (SPHN) aims to improve the use of data obtained during routine healthcare encounters by harmonizing data across Switzerland and facilitating accessibility for research ...
Here, we describe the results of a two-day symposium that aimed to summarise what had been achieved in the SwissPedData project, to put it in an international context, and to discuss the next steps for ...
Acknowledgements The authors would like to thank the speakers of the symposium and all the people who helped with the organization and coordination: Katrin Crameri, Alex Leichtle, Katie Harron, Peter Merkus ...
doi:10.1186/s12919-021-00226-3
pmid:34538238
fatcat:kpjbqo56prac3iebkw7fkpwely
Cohort profile: The Swiss Transplant Cohort Study (STCS): A nationwide longitudinal cohort study of all solid organ recipients in Switzerland
2021
BMJ Open
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of them for kidney and liver transplants. ...
The STCS genomic data set includes around 3000 patients.Findings to dateDetailed clinical and laboratory data in high granularity as well as patient-reported outcomes from transplant recipients and activities ...
The STCS considers all data as sensitive and therefore enforces the use of a highly secured tenant hosted with the BioMedIT network of the Swiss Personalised Health Network (SPHN). ...
doi:10.1136/bmjopen-2021-051176
pmid:34911712
pmcid:PMC8679072
fatcat:3sf6s6zl3rfqhinttbgv3xbpc4
Symposium report: One Health meets sequencing
2019
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Therefore we have organized a symposium on this technology with a focus on current and future applications in the field of "One Health". ...
This symposium brought together leading institutions and fostered the ongoing discussion on the identified challenges, paving the way for solutions in public health, diagnostics, and research. ...
Research data may classify as confidential (based on the SPHN IT Security Policy (15) and on the Leonhard Med Acceptable Use Policy) if: (i) it is sensitive personal data (Federal Act on Data Protection ...
doi:10.7892/boris.132544
fatcat:kuwgfdggqnd6db55o6d2sueahm
ELIXIR Annual Report 2020
[article]
2021
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and transferring data including sensitive human data. ...
lead insTiTuTe SIB Swiss Institute of
Bioinformatics
WeBsiTe
www.sib.swiss
z Tailored a secure infrastructure
network, BioMedIT, to provide
all authorised researchers in
Switzerland with easy ...
The difference between the value of these contributions valued in Euros at the date of payment and the date of the approval of the 2020 budget was a loss of €36k (2019: loss of €68k). ...
doi:10.7490/f1000research.1118580.1
fatcat:saezbeodv5cpxoxfbh55pxjvwa
GA4GH: International policies and standards for data sharing across genomic research and healthcare
2021
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of humans, with increasing levels of diversity. ...
The decreasing cost of genomic sequencing (along with other genome-wide molecular assays) and increasing evidence of its clinical utility will soon drive the generation of sequence data from tens of millions ...
Baudis acknowledges funding from the BioMedIT Network project of Swiss Institute of Bioinformatics (SIB) and Swiss Personalized Health Network (SPHN); B.M.K. acknowledges funding from the Canada Research ...
doi:10.5167/uzh-210474
fatcat:2zuvemzcarb6rorzc4wduhweke
Cohort profile: The Swiss Transplant Cohort Study (STCS): A nationwide longitudinal cohort study of all solid organ recipients in Switzerland
2021
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Future plans The STCS will deepen its efforts in personalised medicine and digital epidemiology, and will also focus on allocation research and the use of causal inference methods to make complex matters ...
research in the framework of Swiss transplantation medicine. ...
The STCS considers all data as sensitive and therefore enforces the use of a highly secured tenant hosted with the BioMedIT network of the Swiss Personalised Health Network (SPHN). ...
doi:10.5167/uzh-212810
fatcat:3japzn2mnrg6di5f6hzhtoa5aq
Cohort profile: The Swiss Transplant Cohort Study (STCS): A nationwide longitudinal cohort study of all solid organ recipients in Switzerland
2021
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Future plans The STCS will deepen its efforts in personalised medicine and digital epidemiology, and will also focus on allocation research and the use of causal inference methods to make complex matters ...
research in the framework of Swiss transplantation medicine. ...
The STCS considers all data as sensitive and therefore enforces the use of a highly secured tenant hosted with the BioMedIT network of the Swiss Personalised Health Network (SPHN). ...
doi:10.5451/unibas-ep85834
fatcat:7gtsag2tuzf5pcfoy3i2iiovzm