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SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system
2008
Nucleic Acids Research
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SNPLogic (http://www.snplogic.org) brings together single nucleotide polymorphism (SNP) information from numerous sources to provide a comprehensive SNP selection, annotation and prioritization system ...
Thus, SNPLogic can be used to identify and prioritize candidate SNPs, assess custom and commercial arrays panels and annotate new SNP data with publicly available information. ...
INTRODUCTION Logical single nucleotide polymorphism (SNP) selection is a common challenge to designing a genotyping strategy for disease association studies. ...
doi:10.1093/nar/gkn756
pmid:18984625
pmcid:PMC2686434
fatcat:mgckpbqx5bbsbmycxcl66sxzb4
METU-SNP: An Integrated Software System for SNPComplex Disease Association Analysis
2011
Journal of Integrative Bioinformatics
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Single Nucleotide Polymorphisms (SNPs) are the most common form of genomic variations and they can represent an individual's genetic variability in greatest detail. ...
Here, we introduce and describe the system functionality and architecture of the METU-SNP. ...
Acknowledgements We sincerely thank developers of SNPLogic for helping us with our integrated database structure. ...
doi:10.1515/jib-2011-187
fatcat:uniwvj4jkbgdvlzyb32vwfasb4
METU-SNP: an integrated software system for SNP-complex disease association analysis
2011
Journal of Integrative Bioinformatics
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A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Single Nucleotide Polymorphisms (SNPs) are the most common form of genomic variations and they can represent an individual's genetic variability in greatest detail. ...
Here, we introduce and describe the system functionality and architecture of the METU-SNP. ...
Acknowledgements We sincerely thank developers of SNPLogic for helping us with our integrated database structure. ...
doi:10.2390/biecoll-jib-2011-187
pmid:22156365
fatcat:s4ngjm6ffzhndpmm7hrya2pc6u
regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions
2012
Computer applications in the biosciences : CABIOS
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Results: We present regSNPs, an informatics strategy that integrates several established bioinformatics tools, for prioritizing regulatory SNPs, i.e. the SNPs in the promoter regions that potentially affect ...
Despite the technical advances, informatics methodologies need to be developed to prioritize thousands of variants for potential causative effects. ...
ACKNOWLEDGEMENTS The authors thank the valuable discussion from Dr Lang Li in the Center for Computational Biology and Bioinformatics at Indiana University School of Medicine. ...
doi:10.1093/bioinformatics/bts275
pmid:22611130
pmcid:PMC3389767
fatcat:bikoa7y35jfcvilnytnhutrqpy
Identifying functional single nucleotide polymorphisms in the human CArGome
2011
Physiological Genomics
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Rob Fortuna and Brett Robbins from the University of Rochester Combined Internal Medicine-Pediatrics Residency Program for project support. ...
SINGLE NUCLEOTIDE POLYMORPHISMS (SNPs) are the most common variant in the human genome. ...
Fig. 1 . 1 Method of identifying functional single nucleotide polymorphism (SNPs) in the human CArGome. ...
doi:10.1152/physiolgenomics.00098.2011
pmid:21771879
pmcid:PMC3180741
fatcat:geotzcp22bg6zppsx7iu4xdrhy