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Context aware spatio-temporal cell tracking in densely packed multilayer tissues

Anirban Chakraborty, Amit K. Roy-Chowdhury
<span title="">2015</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kpkfymbkufcnzjfc5ydyokby4y" style="color: black;">Medical Image Analysis</a> </i> &nbsp;
Modern live imaging technique enables us to observe the internal part of a tissue over time by generating serial optical images containing spatio-temporal slices of hundreds of tightly packed cells.  ...  These similarity scores are further used in a spatio-temporal graph labeling problem to obtain the optimal and feasible set of correspondences between individual cell slices across the 4D image dataset  ...  Venugopala Reddy from the department of Botany and Plant Sciences at UC Riverside for providing us with the Arabidopsis SAM live-imaging datasets that have been used throughout the experiments.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.media.2014.09.008">doi:10.1016/j.media.2014.09.008</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25461334">pmid:25461334</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/l3pmtvb6encwpedh6wuob6bpsy">fatcat:l3pmtvb6encwpedh6wuob6bpsy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151025143310/http://www.ee.ucr.edu/%7Eamitrc/publications/MedIA-14.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bb/fc/bbfc1e028a544d5185673528149bdff225143742.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.media.2014.09.008"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Deciphering tissue morphodynamics using bioimage informatics

Alexandre C. Dufour, Anneliene H. Jonker, Jean-Christophe Olivo-Marin
<span title="2017-03-27">2017</span> <i title="The Royal Society"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/p7stgfom7rbkheuw5cc6avanwu" style="color: black;">Philosophical Transactions of the Royal Society of London. Biological Sciences</a> </i> &nbsp;
to segment and track cells simultaneously within the entire spatio-temporal four-dimensional (3Dþtime) hypervolume in a single step, based on spatio-temporal morphological operators [21] (by analogy  ...  studies, and more specifically in the context of plant growth in the Arabidopsis thaliana model plant.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1098/rstb.2015.0512">doi:10.1098/rstb.2015.0512</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28348249">pmid:28348249</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5379021/">pmcid:PMC5379021</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/cuy735thevfchbqbvttl3pzyjy">fatcat:cuy735thevfchbqbvttl3pzyjy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190308194150/http://pdfs.semanticscholar.org/ed9a/38336c36ca6358d3585d700842f0207803af.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ed/9a/ed9a38336c36ca6358d3585d700842f0207803af.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1098/rstb.2015.0512"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379021" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Robust estimation of stem cell lineages using local graph matching

Min Liu, A.K. Roy-Chowdhury, G. Venugopala Reddy
<span title="">2009</span> <i title="IEEE"> 2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops </i> &nbsp;
In this paper, we present a local graph matching based method for tracking cells and cell divisions.  ...  The geometric structure and topology of the cells' relative positions are efficiently exploited to solve the tracking problem using the local graph matching technique.  ...  Introduction Local spatio-temporal co-ordination of cell growth and cell division is important for proper development of organs in both plant and animal systems.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cvpr.2009.5204045">doi:10.1109/cvpr.2009.5204045</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/klr5yxkprfacfag5aoszsbin3i">fatcat:klr5yxkprfacfag5aoszsbin3i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20100630191110/http://www.ee.ucr.edu/~amitrc/cvpr-bio.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e6/e0/e6e0e57d489df5def95debd684df450314fa8332.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cvpr.2009.5204045"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Robust estimation of stem cell lineages using local graph matching

Min Liu, Amit K. Roy-Chowdhury, G. Venugopala Reddy
<span title="">2009</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ilwxppn4d5hizekyd3ndvy2mii" style="color: black;">2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops</a> </i> &nbsp;
In this paper, we present a local graph matching based method for tracking cells and cell divisions.  ...  The geometric structure and topology of the cells' relative positions are efficiently exploited to solve the tracking problem using the local graph matching technique.  ...  Introduction Local spatio-temporal co-ordination of cell growth and cell division is important for proper development of organs in both plant and animal systems.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cvprw.2009.5204045">doi:10.1109/cvprw.2009.5204045</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/cvpr/LiuRR09.html">dblp:conf/cvpr/LiuRR09</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dhdisariifb65n5kgc72iviuya">fatcat:dhdisariifb65n5kgc72iviuya</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20100630191110/http://www.ee.ucr.edu/~amitrc/cvpr-bio.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e6/e0/e6e0e57d489df5def95debd684df450314fa8332.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cvprw.2009.5204045"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

A unified spatio-temporal human body region tracking approach to action recognition

Nouf Al Harbi, Yoshihiko Gotoh
<span title="">2015</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/bby322qx6ndsje4ypr56c7nnly" style="color: black;">Neurocomputing</a> </i> &nbsp;
The LLC coding is employed to optimise the codebook, the coding scheme projecting every one of the spatio-temporal descriptors into a local coordinate representation developed via max pooling.  ...  Human action classification tasks were used to assess the performance of this model.  ...  Spatio-Temporal Segmentation of Human from a Video Stream Every hypothesis outlines a foreground colour probability model within the spatio-temporal context of Markov Random Field (MRF), in which each  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neucom.2014.11.072">doi:10.1016/j.neucom.2014.11.072</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/jdq62gjcqvbm3pfknmq2rqcuj4">fatcat:jdq62gjcqvbm3pfknmq2rqcuj4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180724062231/http://eprints.whiterose.ac.uk/86491/7/WRRO_86491.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c2/fe/c2fe0ce5e81851c8903f3caa01d497aab839651d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neucom.2014.11.072"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Network Consistent Data Association

Anirban Chakraborty, Abir Das, Amit K. Roy-Chowdhury
<span title="2016-09-01">2016</span> <i title="Institute of Electrical and Electronics Engineers (IEEE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3px634ph3vhrtmtuip6xznraqi" style="color: black;">IEEE Transactions on Pattern Analysis and Machine Intelligence</a> </i> &nbsp;
We have tested both the batch and the online NCDA in two application areas-person re-identification and spatio-temporal cell tracking and observed consistent and highly accurate data association results  ...  However, in many problems such as person re-identification, a set of data-points may be observed at multiple spatio-temporal locations and/or by multiple agents in a network and simply combining the local  ...  Spatio-temporal cell tracking. There has been some work on automated tracking and segmentation of cells in time-lapse images, for both plants and animals.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/tpami.2015.2491922">doi:10.1109/tpami.2015.2491922</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26485472">pmid:26485472</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3etgcghrzvau7kedq2dlneggoy">fatcat:3etgcghrzvau7kedq2dlneggoy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20161022001003/http://www.ntu.edu.sg:80/home/a.chakraborty/papers/PAMI-2015.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6b/b9/6bb995fd73e214f86f7992a75e0565ea20c9a0cf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/tpami.2015.2491922"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Towards a Spatio-Temporal Atlas of 3D Cellular Parameters During Leaf Morphogenesis

F. Selka, T Blein, J. Burguet, E. Biot, P. Laufs, P. Andrey
<span title="">2017</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6s36fqp6q5hgpdq2scjq3sfu6a" style="color: black;">2017 IEEE International Conference on Computer Vision Workshops (ICCVW)</a> </i> &nbsp;
A fundamental bottleneck is the current lack of techniques to systematically quantify the spatio-temporal evolution of 3D cell morphology during organ growth.  ...  Using leaf development as a relevant and challenging model to study morphogenesis, we developed a computational framework for cell analysis and quantification from 3D images and for the generation of 3D  ...  Firstly, we present the measurements that do not depend on the context (local environment in the organ) of the cell.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/iccvw.2017.14">doi:10.1109/iccvw.2017.14</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/iccvw/SelkaBBBLA17.html">dblp:conf/iccvw/SelkaBBBLA17</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ivy7ffpxobdwbdoepwygvuqg2m">fatcat:ivy7ffpxobdwbdoepwygvuqg2m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200320131232/http://openaccess.thecvf.com/content_ICCV_2017_workshops/papers/w1/Selka_Towards_a_Spatio-Temporal_ICCV_2017_paper.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/56/d1/56d12d4ff1326c74953e7022706d2deb1cb5c7bd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/iccvw.2017.14"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Building an Aerial-Ground Robotics System for Precision Farming [article]

Alberto Pretto, Stéphanie Aravecchia, Wolfram Burgard, Nived Chebrolu, Christian Dornhege, Tillmann Falck, Freya Fleckenstein, Alessandra Fontenla, Marco Imperoli, Raghav Khanna, Frank Liebisch, Philipp Lottes (+16 others)
<span title="2020-07-21">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We describe a real use case in which a UAV collaborates with a UGV to monitor the field and to perform selective spraying without human intervention.  ...  The application of autonomous robots in agriculture is gaining increasing popularity thanks to the high impact it may have on food security, sustainability, resource use efficiency, reduction of chemical  ...  UAV Localization and Mapping The aim of the UAV perception system is to collect highresolution spatio-temporal multi-spectral maps of the field.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1911.03098v2">arXiv:1911.03098v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gcmmlqqzuvg4flxforwbinrtkq">fatcat:gcmmlqqzuvg4flxforwbinrtkq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200731025213/https://arxiv.org/pdf/1911.03098v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1911.03098v2" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

A Spatio-Temporally Explicit Random Encounter Model for Large-Scale Population Surveys

Jussi Jousimo, Otso Ovaskainen, Aaron W. Reed
<span title="2016-09-09">2016</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
We test the performance of spatio-temporal and temporal approaches by a simulation study mimicking the Finnish winter track count survey.  ...  spatio-temporal variation in population density.  ...  We used the default hyperpriors provided by R-INLA for the spatio-temporal and the temporal models.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0162447">doi:10.1371/journal.pone.0162447</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27611683">pmid:27611683</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5017679/">pmcid:PMC5017679</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mncab5arwrbqzkgq2e6l75vwtm">fatcat:mncab5arwrbqzkgq2e6l75vwtm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191027052945/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5017679&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c0/f3/c0f31a152cab4d3d761e08d7e51d5aec088af13f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0162447"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5017679" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Variable-angle epifluorescence microscopy characterizes protein dynamics in the vicinity of plasma membrane in plant cells

Tong Chen, Dongchao Ji, Shiping Tian
<span title="2018-03-14">2018</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/f7dj37omsze4naoihng2oitimy" style="color: black;">BMC Plant Biology</a> </i> &nbsp;
Hence, the applications for imaging protein localization and dynamics require high accuracy, particularly at high spatio-temporal level.  ...  membrane microdomain and protein motility in intact plant cells.  ...  In plants, however, the plant cell wall imposes a rigid barrier to the real-time tracking of the dynamics of such events with high spatio-temporal accuracy, and this had significantly hampered the efforts  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12870-018-1246-0">doi:10.1186/s12870-018-1246-0</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29540149">pmid:29540149</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5853057/">pmcid:PMC5853057</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4dgrzo2prbe7bdqomf4pt5mjyq">fatcat:4dgrzo2prbe7bdqomf4pt5mjyq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180720030033/https://bmcplantbiol.biomedcentral.com/track/pdf/10.1186/s12870-018-1246-0" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b9/22/b922f04f6f2e29546d6ab4a813ff3d0a67493f77.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12870-018-1246-0"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853057" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A Novel Image-Analysis Technique for Kinematic Study of Growth and Curvature

P. Basu, A. Pal, J. P. Lynch, K. M. Brown
<span title="2007-08-24">2007</span> <i title="American Society of Plant Biologists (ASPB)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lyouqq67dncvxgcbflq26svwta" style="color: black;">Plant Physiology</a> </i> &nbsp;
Therefore, a new image-analysis program, KineRoot, was developed to study spatio-temporal patterns of growth and curvature of roots.  ...  KineRoot tracks the displacement of patterns created by the graphite particles over space and time using three search algorithms.  ...  Our approach of nearly automatic image analysis and measurement using colored images provides a new tool for application of kinematic techniques to the analysis of spatio-temporal growth of plant organs  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1104/pp.107.103226">doi:10.1104/pp.107.103226</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17720760">pmid:17720760</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2048733/">pmcid:PMC2048733</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/eulfbcmlffhoznhykt4adkzgpq">fatcat:eulfbcmlffhoznhykt4adkzgpq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190429182824/http://www.plantphysiol.org/content/plantphysiol/145/2/305.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/63/b4/63b43b1e124ad62ef6a85d6eaa0fe2e475c91d93.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1104/pp.107.103226"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2048733" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Analyzing growing plants from 4D point cloud data

Yangyan Li, Xiaochen Fan, Niloy J. Mitra, Daniel Chamovitz, Daniel Cohen-Or, Baoquan Chen
<span title="2013-11-01">2013</span> <i title="Association for Computing Machinery (ACM)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/cqrugwalkvcezgalqorn4fwnuu" style="color: black;">ACM Transactions on Graphics</a> </i> &nbsp;
This is achieved by a novel forward-backward analysis, wherein we track robustly detected plant components back in time to ensure correct spatio-temporal event detection using a locally adapting threshold  ...  We introduce a framework to study plant growth, particularly focusing on accurate localization and tracking topological events like budding and bifurcation.  ...  data, Sujuan Tan for taking care of the plants, Amit Shesh and Nathan Gossett for proofreading the paper.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2508363.2508368">doi:10.1145/2508363.2508368</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2nlb6hxddfcejf6x64vaensbpq">fatcat:2nlb6hxddfcejf6x64vaensbpq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170705120740/http://www.cs.tau.ac.il/~dcor/articles/2013/Analyzing_Growing_Plants_from_4D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/93/cb/93cb258b5159ef0038aa34e4fb5f689c27319015.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2508363.2508368"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>

Dynamic Spatio-temporal Landscape Models [chapter]

Heike Lischke, Janine Bolliger, Ralf Seppelt
<span title="">2007</span> <i title="Springer Netherlands"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/pga4pbajajettbvnrbvaav4fvq" style="color: black;">Landscape Series</a> </i> &nbsp;
The existing landscape models encompass static empirical models, dynamic point and area models, dynamic regionalized and spatially linked spatio-temporal (SLST) models.  ...  The latter take into account both local dynamics and spatial interactions. This chapter discusses various SLST model concepts and approaches that are applied in landscape research.  ...  TreeMig was used to study the factors and processes driving the spatio-temporal vegetation development under past changing environmental conditions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-1-4020-4436-6_17">doi:10.1007/978-1-4020-4436-6_17</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/en7wbj6twfa7xajklb5vnxfp3u">fatcat:en7wbj6twfa7xajklb5vnxfp3u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810133351/http://www.sysecol2.ethz.ch/education/course-portal/VSysEcol/Articles_Reports/06-LischkeLandscapeModels=Li110.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d2/42/d242764de6c886cd6ba3476d7de8c60bfadd1aae.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-1-4020-4436-6_17"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

2020 Index IEEE Transactions on Image Processing Vol. 29

<span title="">2020</span> <i title="Institute of Electrical and Electronics Engineers (IEEE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dhlhr4jqkbcmdbua2ca45o7kru" style="color: black;">IEEE Transactions on Image Processing</a> </i> &nbsp;
Fu, Y., +, TIP 2020 6535-6548 Siamese Local and Global Networks for Robust Face Tracking. Qi, Y., +, Spatio-Temporal Multi-Scale Binary Descriptor.  ...  Li, L., +, TIP 2020 2766-2779 Siamese Local and Global Networks for Robust Face Tracking. Qi, Y., +, TIP 2020 9152-9164 Single Image Deraining Using Bilateral Recurrent Network.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/tip.2020.3046056">doi:10.1109/tip.2020.3046056</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/24m6k2elprf2nfmucbjzhvzk3m">fatcat:24m6k2elprf2nfmucbjzhvzk3m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201224144031/https://ieeexplore.ieee.org/ielx7/83/8835130/09301460.pdf?tp=&amp;arnumber=9301460&amp;isnumber=8835130&amp;ref=" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/56/93/5693eebc307c33915511489f6dcddcb127981534.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/tip.2020.3046056"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

From spatio-temporal morphogenetic gradients to rhythmic patterning at the shoot apex [article]

Carlos Samuel Galvan-Ampudia, Guillaume Cerutti, Jonathan Legrand, Romain Azais, Géraldine Brunoud, Steven Moussu, Christian Wenzl, Jan Lohmann, Christophe Godin, Teva Vernoux
<span title="2018-11-13">2018</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Here, we used a quantitative imaging approach to map auxin distribution and response. We demonstrate the existence of high-definition spatio-temporal auxin distribution in the meristem.  ...  and temporal morphogenetic information generates rhythmic patterning.  ...  Therefore it has a spatio-temporal periodicity property and we can write: * ( , , + ) = * ( , + , ) We use this spatio-temporal periodicity property of local cellular speed to extrapolate cell motion over  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/469718">doi:10.1101/469718</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/w72iw7al7nb63mutj5zovi7pqm">fatcat:w72iw7al7nb63mutj5zovi7pqm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200325123539/https://www.biorxiv.org/content/biorxiv/early/2018/11/13/469718.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/59/53/59536b4ed6fc892748eb47b50a3edaa5dd54c9c4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/469718"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>
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