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The denitrification paradox: The role of O 2 in sediment N 2 O production
2018
Estuarine, Coastal and Shelf Science
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This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International licence Newcastle University ePrints -eprint.ncl.ac.uk Barnes J, Upstill-Goddard RC. ...
N2O analysis used an Electron Capture Detector (ECD) with a 63 Ni source at 350 o C. ...
Incubation experiments We carried out seven sediment incubation experiments on individual sediments, all at a laboratory temperature of 22 ± 0.5 o C (Table 1 ). ...
doi:10.1016/j.ecss.2017.11.018
fatcat:n6xasvl5ybbldhwgfvhek3lrwq
Functional characterization of the human 1-acylglycerol-3-phosphate-O-acyltransferase isoform 10/glycerol-3-phosphate acyltransferase isoform 3
2009
Journal of Molecular Endocrinology
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This cDNA has been recently identified as glycerol-3-phosphate-O-acyltransferase isoform 3 (GPAT3). ...
Several 1-acylglycerol-3-phosphate-O-acyltransferases (AGPATs) acylate lysophosphatidic acid (LPA) at the sn-2 (carbon 2) position to produce phosphatidic acid (PA). ...
The product formed (LPA) was resolved on thin layer chromatography (TLC) using chloroform:methanol:acetic acid:H 2 O (50:25:8:4) as mobile phase. ...
doi:10.1677/jme-09-0010
pmid:19318427
pmcid:PMC5070603
fatcat:bzn5it4njrgzzpqlqaridanfjm
Achieving Centimetre-level Positioning Accuracy in Urban Canyons with Locata Technology
2007
Journal of Global Positioning Systems
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Jimmy LaMance from Locata Corp; Mr Noni Politi (from the UNSW), Mr Huib De Ligt and Mr Richard Barnes (from the IESSG) for their help during the experiments. ...
(Barnes et al., 2006) . ...
The aim of the project is to meet this recognized need to precisely map buried assets in urban areas (Roberts et al., 2006) . ...
doi:10.5081/jgps.6.2.158
fatcat:p6b7wttx25f3vaau4ehpbmw3xa
Decreased Gray Matter Concentration in the Lateral Geniculate Nuclei in Human Amblyopes
2010
Investigative Ophthalmology and Visual Science
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PURPOSE. In a group of humans with strabismic amblyopia, the relationship was examined between the structure and function of different brain regions. Three question were addressed: (1) Is the lateral geniculate nucleus (LGN) in humans with amblyopia structurally as well as functionally abnormal? (2) Do structural anomalies in the visual cortex correlate with the previously reported cortical functional losses? (3) Is there a link between the functional anomalies in the visual cortex and any
doi:10.1167/iovs.09-3931
pmid:19875650
fatcat:me45xksncrckncrgmj7teeq2am
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... tural anomalies in the geniculate? METHODS. The structure was compared by using voxel-based morphometry (VBM) and the function by functional magnetic resonance imaging (fMRI). RESULTS. The results showed that the geniculate is structurally abnormal in humans with strabismic amblyopia. CONCLUSIONS. These findings add further weight to the role of the LGN in the cortical deficits exhibited in human strabismic amblyopes. (Invest Ophthalmol Vis Sci.
A COMPARISON OF MYOTROPHIC AND ANDROGENIC ACTIVITIES OF TESTOSTERONE PROPIONATE WITH 19-NORTESTOSTERONE AND ITS ESTERS1
1954
Endocrinology
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BARNES, ROBERT O. STAFFORD, MARILYN E. GUILD, LOU C. THOLE and KENNETH J. ...
O.. Suppl. J. Roy. Slat. Soc.. IV: No. 1:1. 1937.
Kaasenaar, a. a. H., D. W. van Bekkum and A. Querido: Acta Endo. 12: 153. 1953. Kenyon, A. T., K. Knowlton and I. Sandiford; Ann. Int. ...
doi:10.1210/endo-55-1-77
pmid:13173417
fatcat:ktx2cuzbfrdy3itolrhboipca4
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method: Fig. 1
2015
Bioinformatics
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Identification of protein interaction subnetworks is an important step to help us understand complex molecular mechanisms in cancer. In this paper, we develop a BMRF-Net package, implemented in Java and Cþþ, to identify protein interaction subnetworks based on a bagging Markov random field (BMRF) framework. By integrating gene expression data and protein-protein interaction data, this software tool can be used to identify biologically meaningful subnetworks. A user friendly graphic user
doi:10.1093/bioinformatics/btv137
pmid:25755273
pmcid:PMC4495295
fatcat:x45x6p6nnjcnflyzf4bngogizi
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... e is developed as a Cytoscape plugin for the BMRF-Net software to deal with the input/output interface. The detailed structure of the identified networks can be visualized in Cytoscape conveniently. The BMRF-Net package has been applied to breast cancer data to identify significant subnetworks related to breast cancer recurrence. Availability and implementation: The BMRF-Net package is available at http://sourceforge.net/projects/bmrfcjava/. The package is tested under Ubuntu 12.04 (64-bit), Java 7, glibc 2.15 and Cytoscape 3.1.0.
David James Mearns Anderson John Malcolm Barnes Deb Kumar Bose William ("Bill") Kerr Noble Brown Bidhan Chandra Chatterjee Marion Angela Crawford Margaret Anne Dickinson Sir John Rogers Ellis David Idris Harries James Henderson Levack John Sumner Stead David Stephen Peck
1998
BMJ (Clinical Research Edition)
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[W O Roberts] Deb Kumar Bose General practitioner Wolverhampton 1966 -96 (b 1933 q Calcutta 1958
James Henderson Levack Former consultant surgeon Southern General Hospital, Glasgow (b Leuchars, Fife ...
John Malcolm Barnes Consultant orthopaedic surgeon Ysbyty Gwynedd Bangor, 1980 Bangor, -96 (b 1943 to a father who was a professor of orthopaedic surgery; q Middlesex 1967; FRCS), died from carcinoma ...
doi:10.1136/bmj.317.7163.952
pmid:9756833
pmcid:PMC1114002
fatcat:uniynkfcabfkxpbzecj7y74aty
Actions to halt biodiversity loss generally benefit the climate
2021
Zenodo
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., 2016; Roberts et al., 2017; Sala 303 et al., 2021). ...
At sea, ecological representation and connectivity between marine protected areas would 304 require at least 30% of sea protected, with a focus on areas most affected by human activities (Roberts et 305 ...
doi:10.5281/zenodo.5235533
fatcat:jmpbxs6udrcnjfylxncq5pfjmi
Delays, fears and training needs: Perspectives of health workers on clinical management of snakebite revealed by a qualitative study in Kitui County, Kenya
2021
Toxicon: X
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u r n a l P r e -p r o o f ...
u r n a l P r e -p r o o f facilities and the focus was on management within healthcare (Gutiérrez et al., 2017) . ...
doi:10.1016/j.toxcx.2021.100078
fatcat:wvcj6lkccneufdkndixobz2vxa
The Reflective Plant Breeding Paradigm: A Robust System of Germplasm Development to Support Strategic Diversification of Agroecosystems
2014
Crop science
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RADIAL STAR FORMATION HISTORIES IN 15 NEARBY GALAXIES
2015
Astronomical Journal
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2015 pre-print arXiv:1511.03285v1 fatcat:lnqibqii7bbjlabfbrgomxfnnm
Photometric uncertainties ǫ total are computed by summing in quadrature the calibration error ǫ cal and two uncertainties ǫ sky,local and ǫ sky,global based on the measured sky fluctuations, i.e., ǫ total ...
= ǫ 2 cal + ǫ 2 sky,local + ǫ 2 sky,global (1) with ǫ sky,local = σ sky,local Ω pix N pix (2) and ǫ sky,global = σ sky,global Ω pix N pix (3) where σ sky,local is the standard deviation of the sky values ...
doi:10.3847/0004-6256/151/1/4
fatcat:fmfzzgx7lbggvllsvhiukqrcmi
Precipitation-induced surface brightenings seen on Titan by Cassini VIMS and ISS
2013
Planetary Science
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l m e d M o n t e s
Ech oria th Mo ntes
Kajsa Undae
N ot us U nd ae
B o re a s U n d a e
Notu s Und ae
Eu ru s Un da e
Rer ir
Mon tes
Ang mar Mon tes
Gra m
Mon tes
http://www.planetary-science.com ...
Two mountain ranges, inferred from subtle blue deviations from the equatorial bright spectrum of the sort discovered empirically by Barnes et al. 2007 [3] , cross the area. ...
doi:10.1186/2191-2521-2-1
fatcat:jwrvp7nmqbblfevrzscv5meieq
Transmission dynamics of pandemic influenza A(H1N1)pdm09 virus in humans and swine in backyard farms in Tumbes, Peru
2015
Influenza and Other Respiratory Viruses
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Addendum Marc-AlainWiddowson and John Barnes, U.S. Centers for Disease Control and Prevention, Atlanta, GA, U.S.A., involved in interpretation of the data and revising the intellectual content. ...
doi:10.1111/irv.12329
pmid:26011186
pmcid:PMC4687498
fatcat:7vxame4ix5bcthjwpadpndy5bq
A Novel Point Mutation of theRETProtooncogene Involving the Second Intracellular Tyrosine Kinase Domain in a Family with Medullary Thyroid Carcinoma
2004
Journal of Clinical Endocrinology and Metabolism
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Hereditary medullary thyroid carcinoma, a tumor that arises from the parafollicular cells of the thyroid gland, occurs in isolation (as in familial medullary thyroid carcinoma), in association with hyperparathyroidism and pheochromocytoma (as in multiple endocrine neoplasia type 2A), or in association with pheochromocytoma, marfanoid habitus, and mucosal neuromas (as in multiple endocrine neoplasia type 2B). These genetic syndromes are associated with germline-activating mutations of the RET
doi:10.1210/jc.2004-0073
pmid:15240641
fatcat:olhsg25nffcyjhadichpiavl2y
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... tooncogene, a cell surface tyrosine kinase receptor, which is believed to modulate specific intracellular signaling pathways involved in the regulation of C cell proliferation and apoptosis. RET-activating mutations in-volve two important functional areas of the receptor: the cysteine-rich extracellular domain and the intracellular tyrosine kinase domain. Multiple endocrine neoplasia type 2A and familial medullary thyroid carcinoma are more commonly associated with mutations in the cysteine-rich extracellular domain, whereas multiple endocrine neoplasia type 2B is exclusively associated with mutations involving the second intracellular tyrosine kinase domain. Here, we describe a novel missense mutation of the RET protooncogene that substitutes arginine for proline at codon 912 of the intracellular tyrosine kinase domain in a family with medullary thyroid carcinoma. (J Clin Endocrinol Metab 89: 3521-3526, 2004) Abbreviations: MTC, Medullary thyroid carcinoma; FMTC, familial MTC; MEN, multiple endocrine neoplasia; TK, tyrosine kinase. JCEM is published monthly by The Endocrine Society (http://www. endo-society.org), the foremost professional society serving the endocrine community.
NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail
2010
PLoS Computational Biology
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Biologically detailed single neuron and network models are important for understanding how ion channels, synapses and anatomical connectivity underlie the complex electrical behavior of the brain. While neuronal simulators such as NEURON, GENESIS, MOOSE, NEST, and PSICS facilitate the development of these data-driven neuronal models, the specialized languages they employ are generally not interoperable, limiting model accessibility and preventing reuse of model components and cross-simulator
doi:10.1371/journal.pcbi.1000815
pmid:20585541
pmcid:PMC2887454
fatcat:d5p7flo4znc3pjmh3wiucfnau4
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... idation. To overcome these problems we have used an Open Source software approach to develop NeuroML, a neuronal model description language based on XML (Extensible Markup Language). This enables these detailed models and their components to be defined in a standalone form, allowing them to be used across multiple simulators and archived in a standardized format. Here we describe the structure of NeuroML and demonstrate its scope by converting into NeuroML models of a number of different voltage-and ligand-gated conductances, models of electrical coupling, synaptic transmission and short-term plasticity, together with morphologically detailed models of individual neurons. We have also used these NeuroML-based components to develop an highly detailed cortical network model. NeuroML-based model descriptions were validated by demonstrating similar model behavior across five independently developed simulators. Although our results confirm that simulations run on different simulators converge, they reveal limits to model interoperability, by showing that for some models convergence only occurs at high levels of spatial and temporal discretisation, when the computational overhead is high. Our development of NeuroML as a common description language for biophysically detailed neuronal and network models enables interoperability across multiple simulation environments, thereby improving model transparency, accessibility and reuse in computational neuroscience.
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