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Rintact: enabling computational analysis of molecular interaction data from the IntAct repository
2007
Bioinformatics
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Motivation: The IntAct repository is one of the largest and most widely used databases for the curation and storage of molecular interaction data. ...
Results: We introduce Rintact, a Bioconductor package that allows users to transform PSI-MI XML2.5 interaction data files from IntAct into R graph objects. ...
ACKNOWLEDGEMENTS We would like to thank Abhishek Pratap and Li Wang for testing the Rintact software package. ...
doi:10.1093/bioinformatics/btm518
pmid:17989096
fatcat:i74o7n7hbnfofg7hwgjc5wtmli
Fundamentals of protein interaction network mapping
2015
Molecular Systems Biology
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A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Studying protein interaction networks of all proteins in an organism ("interactomes") remains one of the major challenges in modern biomedicine. ...
In addition, we discuss computational methods to predict, map, and visualize interactomes, and provide a summary of some of the most important interactome resources. ...
The work in the Stagljar laboratory is supported by grants from the Ontario Genomics ...
doi:10.15252/msb.20156351
pmid:26681426
pmcid:PMC4704491
fatcat:yl45k4mjrrdv5m7lzxyfinkknm