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Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees and whole-genome-based data

J. D. Edwards, A. M. Baldo, L. A. Mueller
2016 Database: The Journal of Biological Databases and Curation  
., and Mueller,L.A. Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees and whole-genome-based data.  ...  Ricebase (http://ricebase.org) is an integrative genomic database for rice (Oryza sativa) with an emphasis on combining datasets in a way that maintains the key links between past and current genetic studies  ...  The integration of pedigrees and breeding records is a unique feature of Ricebase among the existing rice genomics databases.  ... 
doi:10.1093/database/baw107 pmid:27515824 pmcid:PMC4980570 fatcat:32pebitnyrdy7lrljzhncw3zsi

A Review of Integrative Omic Approaches for Understanding Rice Salt Response Mechanisms

Mohammad Asad Ullah, Muhammad-Redha Abdullah-Zawawi, Rabiatul-Adawiah Zainal-Abidin, Noor Liyana Sukiran, Md Imtiaz Uddin, Zamri Zainal
2022 Plants  
and also expedite precision rice breeding such as genetic engineering and genome editing.  ...  This review focuses on the use of multi-omics approaches to improve next-generation rice breeding for salinity resistance and tolerance, including genomics, transcriptomics, proteomics, metabolomics and  ...  all the research input from the Molecular Biotechnology Laboratory, Universiti Kebangsaan Malaysia (UKM), Bangi 43600, Malaysia.  ... 
doi:10.3390/plants11111430 pmid:35684203 pmcid:PMC9182744 fatcat:shimrimmhrcmhlbjiaulvrac4i

Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management

Zahra Iqbal, Mohammed Shariq Iqbal, M. Iqbal R. Khan, Mohammad Israil Ansari
2021 Frontiers in Plant Science  
Advancements in omics technologies have provided a strong platform for the reliable exploration of genetic resources involved in rice trait development.  ...  Further, the appropriate databases in the field of data science to analyze big data, and retrieve relevant information vis-à-vis rice trait improvement and stress management are described.  ...  D., Baldo, A., and Mueller, L. A. (2016). Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees and whole-genome-based data.  ... 
doi:10.3389/fpls.2021.741419 pmid:34721467 pmcid:PMC8554098 fatcat:f6g24gyfnnddtlfjb2rdql2a5u

Waterlogging tolerance at germination in pea (Pisum sativum L.) [article]

Shahin Shahin Uz Zaman
2019
Whole genome RNAseq was employed to capture differentially expressing genes.  ...  Understanding the tolerance mechanism provides a platform to breed for adaptation to waterlogging stress at germination in pea.  ... 
doi:10.26182/5d89a0fb3b70a fatcat:c326gndeubh5xhpbzhmaphaf4a