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Ribbons: Enabling the Effective Use of HPC Utilization Data for System Support Staff [article]

Robert Sisneros, Joshi Fullop, B. David Semeraro, Greg Bauer
2014 Eurographics Conference on Visualization  
We have developed such a utility, a visual analytics tool for the support staff of the Blue Waters supercomputer.  ...  Our initial goal was broad: provide an informative illustration of current running jobs on the machine for the purpose of system monitoring.  ...  After the upgrade, support staff used the ribbon viewer to better understand the extent to which this was happening. Follow-up reports on utilization issues included Figure 5(a) .  ... 
doi:10.2312/eurova.20141139 dblp:conf/vissym/SisnerosFSB14 fatcat:a4ijx6g43vfphldl4abts5uqk4

Century‐of‐Information Research (CIR): A Strategy for Research and Innovation in the Century of Information

The E‐Science Directors' Forum Stra, Malcolm Atkinson, David Britton, Peter Coveney, David De Roure, Ned Garnett, Neil Geddes, Robert Gurney, Keith Haines, Lorna Hughes, David Ingram, Paul Jeffreys (+7 others)
2009 Prometheus  
Establish an Office of Strategic Coordination of Century-of-Information Research, Support the continuous innovation of ICT-enabled research methods, 3.  ...  The e Science initiative enabled experts to invent and use new research methods and to demonstrate what is possible.  ...  Innovation and optimisation in the use of these facilities and in the methods they enable will enhance the effectiveness of the researchers.  ... 
doi:10.1080/08109020802657479 fatcat:pgndz36yqfc4zdeljr24jh4ssu

Strategies for industry to engage in materials modelling

Gerhard Goldbeck, Alexandra Simperler
2019 Zenodo  
These can be classified in KPIs that track efficiency (such as speed of getting data) as well as effectiveness such as the probability of advancing to the next stage using materials modelling.  ...  The QBTM provides a means of analysing and tracking the impact of materials modelling on different stages of R&D while the 4D stands for the four dimensions that provide 'levers' for impact: People, Tools  ...  Business Decision Support Systems are Enablers and their integration with materials modelling integration of materials modelling (Belouettar, et al., 2018) the Enabling Changes contributing to closer  ... 
doi:10.5281/zenodo.3564455 fatcat:l2afu2tqvnhozltas47v4umfdy

An Assessment of Imaging Informatics for Precision Medicine in Cancer

C. Chennubhotla, L. P. Clarke, A. Fedorov, D. Foran, G. Harris, E. Helton, R. Nordstrom, F. Prior, D. Rubin, J. H. Saltz, E. Shalley, A. Sharma
2017 IMIA Yearbook of Medical Informatics  
Results: Recommendations include: use of standards in data collection and clinical correlates to promote interoperability; data sharing and validation of imaging tools; clinician's feedback in all phases  ...  Conclusions: This article provides a survey of the role and priorities for imaging informatics to help advance quantitative imaging in the era of precision medicine.  ...  Larry Clarke, who provided the original impetus for this, and Eve Shalley, for her efforts to capture, consolidate, edit, and wrangle the original whitepaper into existence.  ... 
doi:10.15265/iy-2017-041 pmid:29063549 pmcid:PMC6250996 fatcat:ktdiwnamzbat7emfmfz2ddq3py

An Assessment of Imaging Informatics for Precision Medicine in Cancer

C. Chennubhotla, L. P. Clarke, A. Fedorov, D. Foran, G. Harris, E. Helton, R. Nordstrom, F. Prior, D. Rubin, J. H. Saltz, E. Shalley, A. Sharma
2017 IMIA Yearbook of Medical Informatics  
Results: Recommendations include: use of standards in data collection and clinical correlates to promote interoperability; data sharing and validation of imaging tools; clinician's feedback in all phases  ...  Conclusions: This article provides a survey of the role and priorities for imaging informatics to help advance quantitative imaging in the era of precision medicine.  ...  Larry Clarke, who provided the original impetus for this, and Eve Shalley, for her efforts to capture, consolidate, edit, and wrangle the original whitepaper into existence.  ... 
doi:10.1055/s-0037-1606490 fatcat:4hbtzht63bfivfyhyhkr2bgbom

A Decade of Developing Radio-Astronomy Instrumentation using CASPER Open-Source Technology [article]

Jack Hickish, Zuhra Abdurashidova, Zaki Ali, Kaushal D. Buch, Sandeep C. Chaudhari, Hong Chen, Matthew Dexter, Rachel Simone Domagalski, John Ford, Griffin Foster, David George, Joe Greenberg, Lincoln Greenhill (+21 others)
2016 arXiv   pre-print
The Collaboration for Astronomy Signal Processing and Electronics Research (CASPER) has been working for a decade to reduce the time and cost of designing, building and deploying new digital radio-astronomy  ...  We describe the ongoing state of software development, as CASPER looks to support a broader range of programming environments and hardware and ensure compatibility with the latest vendor tools.  ...  High-Bandwidth modes use only the FPGA to process the data, and are used for observations over the full input bandwidth of the system with a modest frequency resolution of up to 100 kHz.  ... 
arXiv:1611.01826v1 fatcat:pisvjrffgzdfda5zbmqob4spyi

Atomistic Simulation of Realistically Sized Nanodevices Using NEMO 3-D—Part I: Models and Benchmarks

G. Klimeck, S.S. Ahmed, Hansang Bae, N. Kharche, S. Clark, B. Haley, Sunhee Lee, M. Naumov, Hoon Ryu, F. Saied, M. Prada, M. Korkusinski (+2 others)
2007 IEEE Transactions on Electron Devices  
Not only the quantum-mechanical effects in the electronic states of the device but also the granular atomistic representation of the underlying material are important.  ...  Based on the atomistic valence force field and a variety of nearest neighbor tight-binding models (e.g., s, sp 3 s * , and sp 3 d 5 s * ), NEMO 3-D enables the computation of strain and electronic structure  ...  The authors would like to thank the NSF for Teragrid Award DMR070032 and RCAC, PU, for their support. nanoHUB computational resources were used for part of this work.  ... 
doi:10.1109/ted.2007.902879 fatcat:7gwsedjrnjejfp7jobgsay3yj4

Tunable, Flexible Composite Magnets for Marine Monitoring Applications

Altynay Kaidarova, Mohammed Asadullah Khan, Selma Amara, Nathan R. Geraldi, Muhammad Akram Karimi, Atif Shamim, Rory. P. Wilson, Carlos. M. Duarte, Jurgen Kosel
2018 Advanced Engineering Materials  
By combining the composite magnets with tunnel magnetoresistance sensors, a magnetic animal monitoring system was established that was used to track the behavior of giant clam, crab and turtle.  ...  Parylene C was the most effective for this, providing 2 corrosion resistance, flexibility and enhanced biocompatibility.  ...  We thank the staff and leadership of the Oceanografic in Valencia for their help and support during the sensor tests with turtles and crabs The preparation of PDMS (Dow Corning Corp.  ... 
doi:10.1002/adem.201800229 fatcat:nj7y6zak6nc7vgaarx57plahdi

Applications: Nanoelectronics and Nanomagnetics [chapter]

Jeffrey Welser, Stuart A. Wolf, Phaedon Avouris, Tom Theis
2011 Nanotechnology Research Directions for Societal Needs in 2020  
variables for computation and new forms of data storage.  ...  the nanoelectronics community has largely used these increasing capabilities to shrink existing devices while attempting to maintain the microscale physics that has enabled exponential progress in miniaturization  ...  For solutions, we added the use of controlled chemical synthesis of atomic scale structures, with the example of growth and integration of graphene nano-ribbons and inorganic nanowires.  ... 
doi:10.1007/978-94-007-1168-6_9 fatcat:ipxmpvntubgfhm2q5mn7tsl6em

Appraisal/Selection Requirements For New Forms Of Data

Hervé L'Hours
2018 Zenodo  
This third deliverable (D6.8) of Task 6.3 (Connected curation and quality) of the SERISS WP 6 (New forms of data: legal, ethical and quality issues) focusses on appraisal and selection requirements for  ...  new forms of data.  ...  The intended purpose(s) for which the data will be used effect appraisal decisions and influence repository workflows.  ... 
doi:10.5281/zenodo.1406926 fatcat:z33vqwtarjajxntllqlcuvwl5i

Atomistic modelling of scattering data in the Collaborative Computational Project for Small Angle Scattering (CCP-SAS)

Stephen J. Perkins, David W. Wright, Hailiang Zhang, Emre H. Brookes, Jianhan Chen, Thomas C. Irving, Susan Krueger, David J. Barlow, Karen J. Edler, David J. Scott, Nicholas J. Terrill, Stephen M. King (+2 others)
2016 Journal of Applied Crystallography  
incorporates the known physical chemistry of the system.  ...  This extends the capabilities of solution scattering and provides deeper insights into the physics and chemistry of the systems studied.  ...  best available for the purpose.  ... 
doi:10.1107/s160057671601517x pmid:27980506 pmcid:PMC5139988 fatcat:pyng75dtybfojbbnhglu4u23ca

Model-Based Verification and Validation of Component Structures for RF and Optical Experimental Systems

Charles D. Norton, Houfei Fang, Thierry Michel, Alina Moussessian, John Schiermeier, Paul Springer, Richard Otero
2008 IEEE Aerospace Conference. Proceedings  
Achieving this goal will involve integrating component and system models, results from numerical simulations, and physical tests to predict the performance and prove the viability of such systems within  ...  Future large aperture systems, proposed within NASA and elsewhere, will depend on integrated modeling to assess key performance parameters for designs that cannot be fully tested and verified before flight  ...  This research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration.  ... 
doi:10.1109/aero.2008.4526379 fatcat:4c2fyz6g7zcgnfgtjykjge2oom

Understanding the scientific software ecosystem and its impact: Current and future measures

James Howison, Ewa Deelman, Michael J. McLennan, Rafael Ferreira da Silva, James D. Herbsleb
2015 Research Evaluation  
We conclude with policy recommendations designed to improve insight into the scientific software ecosystem, make it more understandable, and thereby contribute to the progress of science.  ...  Accordingly, many different participants need insight into how to understand the relationship between software, its development, its use, and its scientific impact.  ...  Understanding the scientific software ecosystem and its impact . 15 of 17 Note 1. We are indebted to an anonymous reviewer for highlighting the potential importance of 'dark effort'.  ... 
doi:10.1093/reseval/rvv014 fatcat:nsj7agdntzf5ra63hhogkexu5a

Specificity of bispecific T cell receptors and antibodies targeting peptide-HLA

Christopher J. Holland, Rory M. Crean, Johanne M. Pentier, Ben de Wet, Angharad Lloyd, Velupillai Srikannathasan, Nikolai Lissin, Katy A. Lloyd, Thomas H. Blicher, Paul J. Conroy, Miriam Hock, Robert J. Pengelly (+17 others)
2020 Journal of Clinical Investigation  
For both classes of reagent, target specificity is vital, considering the vast universe of potential pHLA molecules that can be presented on healthy cells.  ...  Here, we made use of structural, biochemical, and computational approaches to investigate the molecular rules underpinning the reactivity patterns of pHLA-targeting bispecifics.  ...  Acknowledgments The authors would like to thank Diamond Light Source for beam time and the staff for assistance with crystal testing and data collection.  ... 
doi:10.1172/jci130562 pmid:32310221 fatcat:nyymx2v6qvditg577cgemdebmu

Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617 [article]

Lei Peng, Yingxia Hu, Madeleine Mankowski, Ping Ren, Rita Chen, Jin Wei, Min Zhao, Tongqing Li, Therese Tripler, Lupeng Ye, Ryan Chow, Zhenhao Fang (+12 others)
2021 biorxiv/medrxiv  
The humanized clone also has strong potency against both the original virus and the B.1.617.2 Delta variant. These mAbs expand the repertoire of therapeutics against SARS-CoV-2 and emerging variants.  ...  Effective therapeutic options such as monoclonal antibodies (mAbs) are still critical.  ...  We thank staffs from various Yale core facilities (Keck, YCGA, HPC, Biophysics, YARC, Cryo-EM, CBDS and others) for technical support. We thank various  ... 
doi:10.1101/2021.12.21.473733 pmid:34981065 pmcid:PMC8722602 fatcat:7weud4z6nzfk7jmlef7buvimoy
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