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Reproducible Research for Computing in Science & Engineering

Lorena A. Barba, George K. Thiruvathukal
2017 Computing in science & engineering (Print)  
in their pursuit of reproducible research.  ...  Open Questions We're determined to make the CiSE RR track serve as a prototype for new norms in scholarly publishing of computational research.  ... 
doi:10.1109/mcse.2017.3971172 fatcat:atnx3azmcnafjbl4qtxsuk7nxe

Reproducible Research: Tools and Strategies for Scientific Computing

Victoria Stodden
2012 Computing in science & engineering (Print)  
Bill Howe addresses the role of cloud computing in enabling reproducibility in computational research.  ...  for reproducible computational science and includes seven articles, each describing software development efforts.  ... 
doi:10.1109/mcse.2012.82 fatcat:s2msk3z4u5djtgu7yrxkw65qpa

Automated Capture of Experiment Context for Easier Reproducibility in Computational Research

Andrew Davison
2012 Computing in science & engineering (Print)  
In this article, I examine the reasons why reproducibility is difficult to achieve, argue that for computational research to become consistently and reliably reproducible requires that reproducibility  ...  In computational science, reproducibility has practical benefits in allowing code reuse and hence enabling more rapid progress and the ability to develop more complex models and analysis methods.  ...  The value of reproducibility The term "reproducible research" in computational science covers a spectrum of activities [3] , distinguished by who is doing the reproducing, and to what degree they have  ... 
doi:10.1109/mcse.2012.41 fatcat:yrdefhn5o5bqno5ymlhpsbpzqi

Python Tools for Reproducible Research on Hyperbolic Problems

Randall J. LeVeque
2009 Computing in science & engineering (Print)  
Reproducible research in computational science is only possible if the computer codes used to generate published results are distributed and/or archived in a form that can later be used to regenerate the  ...  A set of Python tools for facilitating reproducible research on finite volume methods for hyperbolic conservation laws using the Clawpack software are briefly surveyed and illustrated on a sample application  ...  Thanks are due also to Kyle Mandli for assistance in developing the Python and web portal tools being used with Clawpack. This work was supported in part by NSF grant DMS-0609661.  ... 
doi:10.1109/mcse.2009.13 fatcat:an6d2drak5aoxnbiyytxiuvijq

The Legal Framework for Reproducible Scientific Research: Licensing and Copyright

Victoria Stodden
2009 Computing in science & engineering (Print)  
Options for Researchers Computational research is becoming more pervasive across a growing number of fields-for example, in the June 1996 issue of The Journal of the American Statistical Association, nine  ...  Licensing and Copyright Victoria Stodden As computational researchers increasingly make their results available in a reproducible way, questions naturally arise regarding copyright, subsequent use and  ...  The RRS is, in part, a tool to explain the meaning of reproducible research in the computational sciences and, as a result, help communicate scientific standards for acceptable practice.  ... 
doi:10.1109/mcse.2009.19 fatcat:vhnv6vqolrfmdpsvxrwcdcb36e

Reproducible research for scientific computing: Tools and strategies for changing the culture

Randall J. LeVeque, Ian M. Mitchell, Victoria Stodden
2012 Computing in science & engineering (Print)  
To choose just a few examples, the annual Society for Industrial and Applied Mathematics (SIAM) Computational Science and Engineering conference featured a multispeaker session on reproducible research  ...  Consequently, researchers from fields as diverse as geoscience, neuroscience, bioinformatics, applied mathematics, psychology, and computer science are calling for data and code to be made available in  ...  In short, reproducible computational science must be recognized as standard practice.  ... 
doi:10.1109/mcse.2012.38 fatcat:3n7pkgb6uvhc5lwujzay2l6ioi

Reproducibility, correctness, and buildability: The three principles for ethical public dissemination of computer science and engineering research

Kristin Yvonne Rozier, Eric W. D. Rozier
2014 2014 IEEE International Symposium on Ethics in Science, Technology and Engineering  
We introduce standards for the evaluation of reproducibility, correctness, and buildability in relation to the varied elements of computer science research and discuss how they apply to proposals, workshops  ...  We argue that these three principles are not being sufficiently met by current publications and proposals in computer science and engineering, and represent a goal for which publishing should continue  ...  ACKNOWLEDGMENT The authors would like to thank our proofreaders, Dorilyn Martz Ames, Linda Davis, Shravan Gaonkar, Tony Kaap, Moshe Vardi, and Saman Zonouz, for their input.  ... 
doi:10.1109/ethics.2014.6893384 fatcat:rxdlne4o7zcv3dnixpmvfpdv4e

Reproducible research in computational sciences: A use case for uncertainty quantification using Jupyter Notebooks

Mojtaba Barzegari, Liesbet Geris
2021 KU Leuven Open Science Day  
KU Leuven Open Science DayReproducible research in computational sciences: A use case for uncertainty quanti cation using Jupyter Notebooks 2 Abstract Reproducible research is gaining attention as a crucial  ...  aspect of open science in recent years, emphasizing the core idea that the results of research should be reproducible and replicable by everyone given the original dataset, code, and software.  ...  This becomes even more important in computational sciences, where researchers can claim a wide range of different output without providing enough details for reproducibility.  ... 
doi:10.21428/1192f2f8.7b6d2ad0 fatcat:rr6wmq7tpzabbjzxfzk62gwehm

Improving CSE software through reproducibility requirements

Michael A. Heroux
2011 Proceeding of the 4th international workshop on Software engineering for computational science and engineering - SECSE '11  
It is often observed that software engineering (SE) processes and practices for computational science and engineering (CSE) lag behind other SE areas [7] .  ...  Computational science should have the same regard for independent verification but it does not.  ...  In principle, computational science should have the same regard for independent confirmation, but a study of the literature shows that in many cases there is very little hope of reproducing published results  ... 
doi:10.1145/1985782.1985787 fatcat:wn2ybxiigndvtm3k6bqcazt37a

From FAIR research data toward FAIR and open research software

Wilhelm Hasselbring, Leslie Carr, Simon Hettrick, Heather Packer, Thanassis Tiropanis
2020 it - Information Technology  
As compared to research data, research software should be both archived for reproducibility and actively maintained for reusability.  ...  We review and analyze the current state in this area in order to give recommendations for making research software FAIR and open.  ...  Computer science, in particular software engineering, may help with reproducibility and reuse to advance computational science.  ... 
doi:10.1515/itit-2019-0040 fatcat:pbzb2xiy2vh7hmpk33wdquvqbe

Comment on "Most computational hydrology is not reproducible, so is it really science?" by Christopher Hutton et al.: Let hydrologists learn the latest computer science by working with Research Software Engineers (RSEs) and not reinvent the waterwheel our

R. W. Hut, N. C. van de Giesen, N. Drost
2017 Water Resources Research  
This work is in part funded by the research programme of the Netherlands Organisation for Scientific Research (NWO) under project number MP-272-13.  ...  This work is in part funded by the Netherlands eScience Center (http:// www.nlesc.nl). Water Resources Research 10.1002/2017WR020665  ...  .: Let hydrologists learn the latest computer science by working with Research Software Engineers (RSEs) and not reinvent the waterwheel ourselves, Water Resour.  ... 
doi:10.1002/2017wr020665 fatcat:gqbiroidknaudlvgwlzq5ouium

Open Source Research Software

Wilhelm Hasselbring, Leslie Carr, Simon Hettrick, Heather Packer, Thanassis Tiropanis
2020 Computer  
It should be both archived for reproducibility and actively maintained for reusability. science. 3 Computer science-in particular, software engineering-may help with reproducibility and reuse to advance  ...  However, research in software engineering and computer science itself will also benefit when programs are reused.  ... 
doi:10.1109/mc.2020.2998235 fatcat:53xndepwxvghjfa2rdgkpi3cx4

Beyond the Badge: Reproducibility Engineering as a Lifetime Skill [article]

Wolfgang Mauerer, Stefan Klessinger, Stefanie Scherzinger
2022 arXiv   pre-print
They serve a dual purpose: Apart from acquiring the coveted badges assigned to reproducible research, reproducibility engineering is a lifetime skill for a professional industrial career in computer science  ...  Knowledge and capabilities in setting up engineering environments that allow for reproducing artefacts and results over decades (a standard requirement in many traditional engineering disciplines), writing  ...  ., is a computer science researcher at University of Passau, and has tutored the joint RepEng course.  ... 
arXiv:2203.05283v1 fatcat:xnt65cfsqnglvjxcpv5h3dfjc4

FAIR and Open Computer Science Research Software [article]

Wilhelm Hasselbring, Leslie Carr, Simon Hettrick, Heather Packer, Thanassis Tiropanis
2019 arXiv   pre-print
In computational science and in computer science, research software is a central asset for research.  ...  However, research in software engineering and computer science itself will also benefit from reuse when research software is involved.  ...  Proper research software engineering enables reproducibility and reusability of research software in computational science.  ... 
arXiv:1908.05986v1 fatcat:zjnwi5godrd4tdquzijcu2ty6a

Search for Computational Workflow Synergies in Reproducible Research Data Analyses in Particle Physics and Life Sciences

Tibor Simko, Kyle Cranmer, Michael R. Crusoe, Lukas Heinrich, Anton Khodak, Dinos Kousidis, Diego Rodriguez
2018 2018 IEEE 14th International Conference on e-Science (e-Science)  
ACKNOWLEDGMENT The CWL integration with the REANA platform was partially supported by the United States' National Science Foundation grant PHY-1247316 "Data and Software Preservation for Open Science"  ...  The present work paves the way towards reproducible science synergies in particle physics and life sciences.  ...  Index Terms-reproducible science, data preservation, data analysis, computational workflows I.  ... 
doi:10.1109/escience.2018.00123 dblp:conf/eScience/SimkoCCHKKR18 fatcat:5lwbmlcm75dbdfysth4b6kxh4e
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