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Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery

S.K. Warfield, M. Ferrant, X. Gallez, A. Nabavi, F.A. Jolesz, R. Kikinis
2000 ACM/IEEE SC 2000 Conference (SC'00)  
We aimed to study the performance of a parallel implementation of an intraoperative nonrigid registration algorithm that accurately simulates the biomechanical properties of the brain and its deformations  ...  It allowed a three-dimensional volumetric deformation to be simulated in less than ten seconds. 1  ...  Access to the Deep Flow parallel cluster (, funded through the ARC 97/02-210 project of the Communaute Francaise de Belgique, was kindly granted to us by Roland  ... 
doi:10.1109/sc.2000.10043 dblp:conf/sc/WarfieldFGNJK00 fatcat:agsxmvjxbfb3vnnv7fdpoddnjm

Real-time registration of volumetric brain MRI by biomechanical simulation of deformation during image guided neurosurgery

Simon K. Warfield, Florin Talos, Alida Tei, Aditya Bharatha, Arya Nabavi, Matthieu Ferrant, Peter McL. Black, Ferenc A. Jolesz, Ron Kikinis
2002 Computing and Visualization in Science  
To be practical for use during neurosurgery, the implementation must meet the real-time constraints of neurosurgery.  ...  The volumetric deformation is inferred through a biomechanical simulation with boundary conditions established via surface matching.  ...  This investigation was supported by NIH grants P41 RR13218, P01 CA67165, R01 RR11747, R01 CA86879 and by a New Concept Award from the Center for Integration of Medicine and Innovative Technology (SKW).  ... 
doi:10.1007/s00791-002-0083-7 fatcat:itl7ynks2zabzochvusyjm4opm

A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery [chapter]

Amit Majumdar, Adam Birnbaum, Dong Ju Choi, Abhishek Trivedi, Simon K. Warfield, Kim Baldridge, Petr Krysl
2005 Lecture Notes in Computer Science  
This will allow surgeons to view images of intra-operative brain deformation within the strict time constraints of the surgical procedure -typically on the order of minutes, multiple times during a six  ...  In the future, advanced biomechanical simulations of brain deformation during surgery will require access to multi-teraflop parallel hardware, supporting operating room infrastructure.  ...  This motivates our efforts to create a novel grid architecture for real-time data driven simulations during image guided neurosurgery.  ... 
doi:10.1007/11428848_87 fatcat:5qnvj65qcreuzmofaakzbya5yi

Simulation in Neurosurgery: A Review of Computer-Based Simulation Environments and Their Surgical Applications

Hani R Malone, Omar N Syed, Michael S Downes, Anthony L D'Ambrosio, Donald O Quest, Michael G Kaiser
2010 Neurosurgery  
CONCLUSION: The computational burden created by the integration of these complex components often limits the fluidity of real-time interactive simulators.  ...  Search terms included, but were not limited to: neurosurgery combined with simulation, virtual reality, haptics, and 3-dimensional imaging.  ...  VOLUME RENDERING/GRAPHICS Computer-based neurosurgical simulation has been described as a ''descendant'' of stereotactic image-guided neurosurgery. 2, 37 As a result, algorithms for creating and displaying  ... 
doi:10.1227/neu.0b013e3181ee46d0 pmid:20881575 fatcat:jipoge6nzfdvbfzeef6ko4xspa

Capturing intraoperative deformations: research experience at Brigham and Women's hospital

Simon K. Warfield, Steven J. Haker, Ion-Florin Talos, Corey A. Kemper, Neil Weisenfeld, Andrea U.J. Mewes, Daniel Goldberg-Zimring, Kelly H. Zou, Carl-Fredrik Westin, William M. Wells, Clare M.C. Tempany, Alexandra Golby (+3 others)
2005 Medical Image Analysis  
This paper reviews the experience at Brigham and WomenÕs Hospital through the process of developing and applying novel algorithms for capturing intraoperative deformations in support of image guided therapy  ...  We have developed algorithms to model the motion of key anatomical structures and system implementations that enable us to estimate the deformation of the critical anatomy from sequences of volumetric  ...  We were successful in developing a real-time biomechanical simulation of brain deformation which has been run during clinical cases and presented new data to the neurosurgeon to enhance intraoperative  ... 
doi:10.1016/ pmid:15721230 fatcat:mahu4a6za5gz5lpg3sr2crzkfq

Neurosurgery simulation using non-linear finite element modeling and haptic interaction

Huai-Ping Lee, Michel Audette, Grand R. Joldes, Andinet Enquobahrie, Kenneth H. Wong, David R. Holmes III
2012 Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling  
Physically-based modeling techniques provide accurate simulation of deformable organs 3, 4 and have been applied to surgical simulations 5-10 and image-guided surgery. 11, 12 Among the physical models  ...  Real-time surgical simulation is becoming an important component of surgical training.  ...  The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institute of Neurological Disorders and Stroke or the National Institutes of  ... 
doi:10.1117/12.911987 pmid:24465116 pmcid:PMC3898833 dblp:conf/miigp/LeeAJE12 fatcat:xvfl3soqgngvhlijfrplbyntf4

Serial registration of intraoperative MR images of the brain

M Ferrant
2002 Medical Image Analysis  
We propose a method to track the deformation of the brain and update preoperative images using intraoperative MR images acquired at different crucial time points during surgery.  ...  The increased use of image-guided surgery systems during neurosurgery has brought to prominence the inaccuracies of conventional intraoperative navigation systems caused by shape changes such as those  ...  Acknowledgements This investigation was supported by NIH grants P41 RR13218, P01 CA67165, R01 RR11747, R01 CA86879 and by a New Concept Award from the Center for Integration of Medicine and Innovative  ... 
doi:10.1016/s1361-8415(02)00060-9 pmid:12426109 fatcat:itkkh35mk5bjnej2dydkwucg6a

Bio-mechanical model of the brain for a per-operative image-guided neuronavigator compensating for "brain-shift" deformations

M. Bucki, C. Lobos, Y. Payan
2007 Computer Methods in Biomechanics and Biomedical Engineering  
Image-guided neurosurgery is facing an important issue for large skull openings, with intraoperative changes that remain largely unsolved.  ...  More recently, biomechanical models of the brain tissues were proposed to constrain the image registration: the models are used to infer a volumetric deformation field from correspondences between contours  ...  During the intervention, once the pilot nodes positions have been recovered within the echographic images, the global tissue deformation can be computed in real-time and the positions of the structures  ... 
doi:10.1080/10255840701479057 fatcat:i4p2zi6cjjazxkm67bv7lgiffu

Computational Models for Image-Guided Robot-Assisted and Simulated Medical Interventions

H. Delingette, X. Pennec, L. Soler, J. Marescaux, N. Ayache
2006 Proceedings of the IEEE  
including image guided, robot-assisted and simulated medical interventions.  ...  Medical Image Analysis plays a crucial role in the diagnosis, planning, control and follow-up of therapy.  ...  Building a surgical simulator requires the real-time and realistic simulation of soft-tissue deformations.  ... 
doi:10.1109/jproc.2006.880718 fatcat:svzvadowwvfslikvrrmy3qkbqq

Estimation of Brain Deformation for Volumetric Image Updating in Protoporphyrin IX Fluorescence-Guided Resection

Pablo A. Valdés, Xiaoyao Fan, Songbai Ji, Brent T. Harris, Keith D. Paulsen, David W. Roberts
2010 Stereotactic and Functional Neurosurgery  
Conclusion: Implementation of brain deformation modeling in FGR shows promise for increasing the accuracy of neurosurgical guidance in the delineation and resection of brain tumors.  ...  Results: Combined use of fluorescence signatures and updated MR image information showed substantially improved accuracy compared to fluorescence or the original (i.e., nonupdated) MR images, detecting  ...  Roberts serves on the data monitoring committee for a Medtronic deep brain stimulation study.  ... 
doi:10.1159/000258143 pmid:19907205 pmcid:PMC2813794 fatcat:epjqftukjrcibp3osceseqdxry

Automatic Nonrigid Registration for Tracking Brain Shift during Neurosurgery [chapter]

J. Rexilius, H. Handels, A. Nabavi, R. Kikinis, S. K. Warfield
2002 Bildverarbeitung für die Medizin 2002  
A linear elastic model is then used to infer the volumetric deformation across the image.  ...  In order to combine informations derived at different time points, we describe a nonrigid registration algorithm that aligns MR scans of the brain.  ...  Furthermore, timing experiments show that our algorithm could be suitable for the real-time constraints of neurosurgery.  ... 
doi:10.1007/978-3-642-55983-9_31 fatcat:xei4cncwdjgpjlmdmpmku2uvey

Integration of patient specific modeling and advanced image processing techniques for image-guided neurosurgery

Neculai Archip, Andriy Fedorov, Bryn Lloyd, Nikos Chrisochoides, Alexandra Golby, Peter M. Black, Simon K. Warfield, Kevin R. Cleary, Robert L. Galloway, Jr.
2006 Medical Imaging 2006: Visualization, Image-Guided Procedures, and Display  
Therefore, estimation of the brain deformation during the image guided tumor resection process is necessary.  ...  This article presents a translational research effort that aims to integrate a number of state-of-the-art technologies for MRI-guided neurosurgery at the Brigham and Women's Hospital (BWH).  ...  CONCLUSIONS We have presented a comprehensive framework for computer-integrated surgery that promises to ameliorate some of the clinical difficulties experienced in contemporary image-guided neurosurgery  ... 
doi:10.1117/12.653930 dblp:conf/miigp/ArchipFLCGBW06 fatcat:bdwvt52h7vcmnc6x4t3smfjn2q

Neurosurgery and brain shift: review of the state of the art and main contributions of robotics

Karin Correa-Arana, Oscar A. Vivas-Albán, José M. Sabater-Navarro
2017 Tecno Lógicas  
It is especially focused on the phenomenon of brain displacement, commonly known as brain shift, which causes a loss of reference between the preoperative images and the volumes to be treated during image-guided  ...  This paper presents a review about neurosurgery, robotic assistants in this type of procedure, and the approach to the problem of brain tissue displacement, including techniques for obtaining medical images  ...  efficiency of image-guided neurosurgery by including realistic brain shift calculus using a completely nonlinear biomechanical model.  ... 
doi:10.22430/22565337.719 fatcat:sp5t4xm2qrctvmlqsdzn377lke

Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery

Neculai Archip, Olivier Clatz, Stephen Whalen, Dan Kacher, Andriy Fedorov, Andriy Kot, Nikos Chrisochoides, Ferenc Jolesz, Alexandra Golby, Peter M. Black, Simon K. Warfield
2007 NeuroImage  
Our objectives were (i) to evaluate the feasibility of non-rigid registration that compensates for the brain deformations within the time constraints imposed by neurosurgery, and (ii) to create augmented  ...  ., Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery, NeuroImage (2007) ,  ...  We thank WM-SciClone administrator Tom Crockett for his continuous support and personal attention to this project. We also thank Mark Anderson for his help with internal data transfer at BWH.  ... 
doi:10.1016/j.neuroimage.2006.11.060 pmid:17289403 pmcid:PMC3358788 fatcat:p3ks7grs7vfjten7qbr5lgqmiu

Author's index

2000 ACM/IEEE SC 2000 Conference (SC'00)  
Catholique de Louvain Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery Gannon, Dennis -NASA Ames Computing and Data Grids for Science and Engineering  ...  -Harvard Medical School Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery Whiting, Michael -Brigham Young University Parallel Phylogenetic Inference Widener  ... 
doi:10.1109/sc.2000.10057 fatcat:siz2mgpg3jhwbeos4ew7z3jmmq
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