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A text-mining system for extracting metabolic reactions from full-text articles

Jan Czarnecki, Irene Nobeli, Adrian M Smith, Adrian J Shepherd
2012 BMC Bioinformatics  
Certain more generic systems may also be used for the same purpose, including the GeneWays system for "extracting, analyzing, visualizing and integrating molecular pathway data" [4] , and the MedScan sentence  ...  Here we present a relatively simple method for extracting metabolic reaction information from free text that scores different permutations of assigned entities (enzymes and metabolites) within a given  ...  Although the fully-automated construction of networks and pathways from the literature may be the ultimate goal, a more practical focus for text mining systems in the immediate future is to provide assistance  ... 
doi:10.1186/1471-2105-13-172 pmid:22823282 pmcid:PMC3475109 fatcat:leqjw2phkbe6veikxy5pcjbhkq

Data Mining for Customers' Positive Reaction to Advertising in Social Media

Veera Boonjing, Daranee Pimchangthong
2017 Proceedings of the 2017 Federated Conference on Computer Science and Information Systems  
The findings also indicate the characteristics of "Product conscious" and "Price Conscious" clusters for customer's reaction and purchasing after seeing online social media advertising.  ...  information for further consideration.  ...  For trend analysis, data mining is used to determine trends in the marketplace [5] .  ... 
doi:10.15439/2017f356 dblp:conf/fedcsis/BoonjingP17 fatcat:6ops3fzk4vfjlphm7t2gfvjlnm

PMC18 COMPARISONS OF DATA MINING ALGORITHMS FOR ADVERSE DRUG REACTIONS: AN EMPIRICAL STUDY BASED ONTHE ADVERSE EVENT REPORTING SYSTEM OFTHE FOOD AND DRUG ADMINISTRATION

Y Chen, JJ Guo, NC Patel, M Steinbuch, XD Lin, C Buncher
2008 Value in Health  
PMC18 COMPARISONS OF DATA MINING ALGORITHMS FOR ADVERSE DRUG REACTIONS: AN EMPIRICAL STUDY BASED ON THE ADVERSE EVENT REPORTING SYSTEM OF THE FOOD AND DRUG ADMINISTRATION Chen Y 1 , Guo JJ 2 , Patel  ...  A new system for making this conversion has been devised.  ... 
doi:10.1016/s1098-3015(10)70553-2 fatcat:papl3w5tajaetiolpho2mp6yg4

Dynamics of non-autonomous fractional reaction-diffusion equations on \mathbb{R}^{N} driven by multiplicative noise

Kaixuan Zhu, ,Hunan Province Cooperative Innovation Center for the Construction, and Development of Dongting Lake Ecological Economic Zone & College of Mathematics and Physics Science, Hunan University of Arts and Science, Changde, 415000, China, Ji Li, Yongqin Xie, Mingji Zhang, ,School of Mathematics and Statistics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, ,School of Mathematics and Statistics, Changsha University of Science and Technology, Changsha, 410114, China, ,Department of Mathematics, New Mexico Institute of Mining and Technology, Socorro, NM 87801, USA
2017 Discrete and continuous dynamical systems. Series B  
We first establish a Nash-Moser-Alikakos type a priori estimate for the difference of solutions near the initial time.  ...  We examine the asymptotic behavior of the non-autonomous nonlocal fractional stochastic reaction-diffusion equations on R N with the nonlinearity f satisfying the polynomial growth of arbitrary order p  ...  Random dynamical system generated by (1) .  ... 
doi:10.3934/dcdsb.2020376 fatcat:n3zqm2eiwrdcba64gunwhuhjfq

MINE WATER TREATMENT TESTS RESULTS FOR A CONTINUOUS FLOW REACTION SYSTEM

Laurentiu Razvan Dinu, Valeriu Badescu, Violeta Dediu, Ionut Cristea, Viorel Patroescu, Voicu Oncu
2017 SIMI 2017   unpublished
This reaction system allows the direct determination of the apparent reaction rate versus sulphate concentration which can be used further for various design tasks.  ...  The reaction rate for sulphate concentration below 600 mg/L may be less than 5 mg/L/min, depending on working conditions.  ...  Acknowledgements The publishing of this work was supported by a grant of the Romanian National Authority for Scientific Research -Program Nucleu PN 16 25 03 04.  ... 
doi:10.21698/simi.2017.0008 fatcat:zhx6edgjifh4nfzmuavg43szyq

Opioid-Associated QT-interval prolongation: Effectiveness of data mining techniques of the public version of the FDA Adverse Event Reporting System (FAERS) for early adverse drug reaction signal identification

Guillermo Alberto Keller, Cecilia Villa Etchegoyen, Martin Denicolai, Roberto Diez, Guillermo Di Girolamo
2018 unpublished
doi:10.13140/rg.2.2.26223.18084 fatcat:6wzbnccs5fdm7lqcwrw7j2zb2a

iADRs

Wen-Yang Lin, He-Yi Li, Jhih-Wei Du, Wen-Yu Feng, Chiao-Feng Lo
2012 ACM SIGHIT Record  
based approach for drug-drug reactions.  ...  The front-end of this system contains two main analysis tools for ADRs detection and analysis, the OLAP engine and drug-ADR association mining.  ... 
doi:10.1145/2180796.2180814 fatcat:nbh6rizterashlvcghjpwlob7u

Simple membrane-based model of the Min oscillator

Zdeněk Petrášek, Petra Schwille
2015 New Journal of Physics  
These results highlight the importance of MinE presence on the membrane without being bound to MinD, and of the reactions of Min proteins on the membrane. necessary for the oscillations.  ...  The proposed model thus provides a possible mechanism for the formation of the MinE ring known from cells.  ...  rate compared to the reactions (2) and (4) (MinE binding from the bulk) for the system to become unstable.  ... 
doi:10.1088/1367-2630/17/4/043023 fatcat:7zj5bztjo5aatcewjyqc3e24ca

Influencing factors for catalytic oxidation of mine gas to methanol in liquid phase

Lihua Zhu, Feng Xu, Yewu Bi, Bin Shen
2014 Chinese Journal of Geochemistry  
In the mine gas-Pd(OAc) 2 -CH 3 COOH system, the yield of CH 3 COOCH 3 increases with the increasing of addition of Pd(OAc) 2 which is redox catalyst for mine gas conversion.  ...  The influencing factors for liquid phase catalytic oxidation of mine gas to methanol (in form of CH 3 COOCH 3 ) are studied using the self-established experimental apparatus.  ...  Introduction Mine gas, containing methane and air, is hazard for underground mining coal.  ... 
doi:10.1007/s11631-014-0676-0 fatcat:xja7tkvbvreo3ezms7avvj5diu

Reconstructing chemical reaction networks

Yong Ju Cho, Naren Ramakrishnan, Yang Cao
2008 Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD 08  
We argue that our reconstruction algorithm can serve as an important primitive for data mining in systems biology applications.  ...  By modeling a chemical reaction system as a Markov network (undirected graphical model), we show how systematically probing for sensitivities between molecular species can identify the topology of the  ...  for CRN mining.)  ... 
doi:10.1145/1401890.1401912 dblp:conf/kdd/ChoRC08 fatcat:yp5qgjej2jfutmitc326wvjwle

The Removal of Uranium onto Nanoscale Zero-Valent Iron Particles in Anoxic Batch Systems

Richard A. Crane, Thomas B. Scott
2014 Journal of Nanomaterials  
However, in the latter stages of the reaction (after 48 hours), significant rerelease of uranium was recorded for the mine water batch system with dissolved O2present.  ...  In contrast, less than 2% uranium rerelease was recorded for the anoxic batch system.  ...  Acknowledgments The authors would like to thank the National Company Uranium (Romania) for providing mine water samples for the current work.  ... 
doi:10.1155/2014/956360 fatcat:obgd56h3ajertldgb3o6yyznye

An Experiment on Knowledge Discovery in Chemical Databases [chapter]

Sandra Berasaluce, Claude Laurenço, Amedeo Napoli, Gilles Niel
2004 Lecture Notes in Computer Science  
The principles of this original experiment on mining chemical reaction databases and its results are detailed and discussed.  ...  Chemical reactions are the main elements on which relies synthesis in organic chemistry, and this is why chemical reactions databases are of first importance.  ...  At present, reaction database management systems are the most useful tools for helping the chemist in synthesis planning.  ... 
doi:10.1007/978-3-540-30116-5_7 fatcat:3bempc35lfgk7mqvxlryfef6xq

Olivine: a supergreen fuel

Roelof D Schuiling
2013 Energy, Sustainability and Society  
Unfortunately, the reaction is too slow for normal technological applications, but when thermally well isolated, most of this heat can be recovered, not only for space heating but even for the production  ...  During the reaction, CO 2 is sustainably sequestered. In this paper, a number of potential applications are described.  ...  With an average value for the specific heat of a gram of the stoichiometric mixture of 1.6 J/g/K (value for basalt), the system, when perfectly isolated, would reach a temperature of 593 K when it starts  ... 
doi:10.1186/2192-0567-3-18 fatcat:3yd7xh3osjfkxnzetrljfwc5bi

Modeling reaction-diffusion of molecules on surface and in volume spaces with the E-Cell System

Satya Arjunan, Masaru Tomita
2009 Nature Precedings  
The MinCDE system in Escherichia coli, for example, relies on intricately controlled reaction, diffusion and localization of Min proteins on the membrane and in the cytoplasm compartments to inhibit cell  ...  The E-Cell System is an advanced open-source simulation platform to model and analyze biochemical reaction networks.  ...  A simplified model of the system is illustrated in Figure I , which includes only MinD and MinE since MinC is not necessary for the oscillation.  ... 
doi:10.1038/npre.2009.3526.1 fatcat:io3grmgay5gnnhi6o55lvo4kha

Modeling Three-Dimensional Spatial Regulation of Bacterial Cell Division (Dissertation)

Satya Arjunan, Satya Arjunan
2010 Nature Precedings  
Using Spatiocyte we could model and reproduce the in vivo MinDE localization dynamics by accounting for the previously reported properties of MinE.  ...  Our results suggest that the MinE ring, which is essential in preventing polar septation, is largely composed of MinE that is transiently attached to the membrane independently after recruited by MinD.  ...  A simplified model of the system is illustrated in Figure 3 .1, which includes only MinD and MinE since MinC is not necessary for the oscillation.  ... 
doi:10.1038/npre.2010.4201 fatcat:lvfhori2zjcmpg6xxkhrg2fvoi
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