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ROBOKOP: an abstraction layer and user interface for knowledge graphs to support question answering

2019 Bioinformatics  
We present Reasoning Over Biomedical Objects linked in Knowledge Oriented Pathways as an abstraction layer and user interface to more easily query KGs and store, rank and explore query results.  ...  KGs are typically stored in a graph-database format, and graph-database queries can be used to answer questions of interest that have been posed by users such as biomedical researchers.  ...  Acknowledgements The authors thank Matt Brush and Chris Mungall for creation of the BioLink data model, Eric Deutch for his contributions to the Translator API standard  ... 
doi:10.1093/bioinformatics/btz604 pmid:31410449 pmcid:PMC6954664 fatcat:vpbwtrsrtrfnvgxyaomclhhrhq

TranQL: An Interactive Query and Visualization Environment for Federated Knowledge Graphs (Preprint)

Steven Cox, Stanley C. Ahalt, James Balhoff, Chris Bizon, Karamarie Fecho, Yaphet Kebede, Kenneth Morton, Alexander Tropsha, Patrick Wang, Hao Xu
2020 JMIR Medical Informatics  
The TranQL interactive web application includes a user interface to support user exploration of the federated knowledge graph.  ...  We aimed to develop an interactive environment for query, visualization, and deep exploration of federated knowledge graphs.  ...  The authors thank Matt Brush and Chris Mungall for creating and publishing the Biolink data model, and Eric Deutch and David Koslicki for contributing to the Translator KGS API specification.  ... 
doi:10.2196/17964 pmid:33226347 fatcat:catqasmnhrdrxid4hvmsax2ox4

Knowledge-based Biomedical Data Science 2019 [article]

Tiffany J. Callahan, Ignacio J. Tripodi Computational Bioscience Program, Department of Pharmacology, University of Colorado Denver Anschutz Medical Campus
2019 arXiv   pre-print
Major themes include the relationships between knowledge graphs and machine learning, the use of natural language processing, and the expansion of knowledge-based approaches to novel domains, such as Chinese  ...  Here we survey the progress in the last year in systems that use formally represented knowledge to address data science problems in both clinical and biological domains, as well as on approaches for creating  ...  ROBOKOP: An Abstraction Layer and User Interface for Knowledge Graphs to Support Question Answering. Bioinformatics 64. Wright D. 2019.  ... 
arXiv:1910.06710v1 fatcat:kvz5k643zvhpdiq67blc2v33wi