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RASS: a web server for RNA alignment in the joint sequence-structure space

Gewen He, Albert Steppi, Jose Laborde, Anuj Srivastava, Peixiang Zhao, Jinfeng Zhang
2014 Nucleic Acids Research  
In this study, we implement a web server for the method, called RASS, to make it publicly available to research community. The web server is located at http://cloud.stat.fsu.edu/RASS/.  ...  ESA treats RNA structures as 3D curves with sequence information encoded on additional coordinates so that the alignment can be performed in the joint sequence-structure space.  ...  ACKNOWLEDGMENT We thank anonymous reviewers for their constructive comments and suggestions.  ... 
doi:10.1093/nar/gku429 pmid:24831547 pmcid:PMC4086137 fatcat:awyrdovewvdbrkgsxhlq4meuni

iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2

Chung-Han Yang, Cheng-Ting Shih, Kun-Tze Chen, Po-Han Lee, Ping-Han Tsai, Jian-Cheng Lin, Ching-Yu Yen, Tiao-Yin Lin, Chin Lung Lu
2016 Nucleic Acids Research  
Since its first release in 2010, iPARTS has become a valuable tool for globally or locally aligning two RNA 3D structures.  ...  It was implemented by a structural alphabet (SA)-based approach, which uses an SA of 23 letters to reduce RNA 3D structures into 1D sequences of SA letters and applies traditional sequence alignment to  ...  alignment of two RNAs is performed in a joint sequence-structure space of six dimensions (7, 8) .  ... 
doi:10.1093/nar/gkw412 pmid:27185896 pmcid:PMC4987943 fatcat:o6p2ggxkyncfjm4bmtubsmpvaa

Table of Contents

2016 Australian Journal of Primary Health  
We have developed a Machine Learning (ML) tool to detect possible Pseudoknots in an RNA primary sequence.  ...  This work examines a distributed web protocol based client-server architecture for enabling ad hoc data acquisition and near real time analysis.  ... 
doi:10.1071/pyv22n4toc fatcat:hrwhnxdpjreslhuwi7y4edqmo4

Das Fehlertolerante System Tandem T16 [chapter]

Alfred Schulz
1984 Software-Fehlertoleranz und -Zuverlässigkeit  
Zurzeit entspricht das Web Service Paradigma dem klassischen Client-Server-Modell, bei dem ein Client Anfragen an einen Web Service stellt, der auf einem dedizierten Server abläuft.  ...  A cadaver study on 19 shoulder joints. Ann Anat 184: 9-14 21. Krammer HJ, Süss A, Singer MV, Wedel T (2002) Neurogastroenterology -From the Basics to the Clinics.  ...  Ferner werden die im Rahmen von TESE-ICSI erhobenen histologischen Daten im Hinblick u. a. auf ihren prognostischen Wert und auf die Sicherheit bei der Beurteilung eines Sertoli-Zell-Only-Syndroms ausgewertet  ... 
doi:10.1007/978-3-642-69705-0_18 dblp:conf/icftcs/Schulz84 fatcat:mcbxefmt25ajljtzk6nh5vudqq

Implementation of glycemic control – problems and solutions

E Halbeck, U Jaschinski, A Scherer, A Aulmann, M Lichtwarck-Aschoff, H Forst
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5296 fatcat:nmfxxjciczecfb33rhrssug744

Exogenous adrenomedullin reduces the arterial lactate concentration and mean pulmonary arterial pressure in ovine endotoxemia

C Ertmer, M Lange, H Van Aken, K Bröking, S Vocke, F Daudel, M Booke, M Westphal
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5170 fatcat:5ph3gjo62ncmdhiomebsxuhmn4

Alkaline phosphatase treatment improves renal function in patients with severe sepsis or septic shock

S Heemskerk, R Masereeuw, O Moesker, M Bouw, J van der Hoeven, W Peters, M Velders, F Russel, P Pickkers
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5174 fatcat:tgsa2sehrzde5lboytyspcpptq

Angiopoietin-2 correlates with pulmonary capillary permeability and disease severity in critically ill patients

M van der Heijden, V van Hinsbergh, G van Nieuw Amerongen, P Koolwijk, R Musters, J Groeneveld
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5171 fatcat:kldpzcrujzfu5etfxecsh3kn3e

Rapid shallow breathing index – a key predictor for noninvasive ventilation

J Crawford, R Otero, M Donnino, J Garcia, R Khazal, T Lenoir
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5329 fatcat:63fnhsholzhzlkdqnzsqgsjo3u

Epithelial cell apoptosis is similar but hypoxic-inducible factor expression is weaker in acute acalculous cholecystitis than in calculous cholecystitis

M Vakkala, J Laurila, J Saarnio, V Koivukangas, H Syrjälä, T Karttunen, Y Soini, T Ala-Kokko
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5163 fatcat:u5alvgjbfraxhemog6lbleprma

Escherichia coli porcine peritonitis induces histological and transcriptome evidence of cardiac injury

R Goldfarb, I Cinel, S Gandhi, L Cinel, M Levine, Q Wang, A Brooks, J Parrillo
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5173 fatcat:keh3dpczevhpzbrntcznu4meaa

nNOS and Nox4 go nuclear: nNOS-derived and NADPH oxidase-derived reactive oxygen/nitrogen species promote oxidative nuclear damage in alveolar epithelial cells

R Connelly, F Schmalstieg, D Traber
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5177 fatcat:di2wfe3cgzcmxiqaj4nm5g2mde

Effect of norepinephrine on cardiac output and preload in septic shock patients

O Hamzaoui, H Ksouri, C Richard, J Teboul
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5197 fatcat:xegtkmxqkzcl3a7syfkaugn2mu

Central venous pressure in a femoral access: a true evaluation?

N Caramelo, P Gonçalves, A Paisana, B Silva, C Dias, S Severino, P Henriques, D Marcelino, D Marum, D Fernandes
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5437 fatcat:w2vbxw7zurbk7hstbgj32g5rce

Glibenclamide dose response in patients with septic shock

A Morelli, C Ertmer, M Lange, K Broeking, H Van Aken, A Orecchioni, M Rocco, P Pietropaoli, M Westphal
2007 Critical Care  
In mice subjected to bacterial lipopolysaccharide (LPS, 5 mg/kg i.p.), treatment of the animals with sodium sulfide (0.2 mg/kg/hour for 4 hours, administered in Alzet minipumps) reduced the LPSinduced  ...  Hydrogen sulfide is produced endogenously by a variety of enzymes involved in cysteine metabolism.  ...  in emergency scenes, even in a confined space.  ... 
doi:10.1186/cc5167 fatcat:skoa4is3qvfdxdp7yoywatmm2m
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