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A Linked Data Approach to Sharing Workflows and Workflow Results [chapter]

Marco Roos, Sean Bechhofer, Jun Zhao, Paolo Missier, David R. Newman, David De Roure, M. Scott Marshall
<span title="">2010</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
, for evaluating evidence and examining data across related experiments, while introducing the potential to find associated resources and integrate them as data and services.  ...  We present initial steps towards preserving bioinformatics design of a data analysis pipeline, and RDF to link the workflow, its component services, run-time provenance, and a personalized biological interpretation  ...  and the Netherlands BioInformatics Centre (NBIC) for their support.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-16558-0_29">doi:10.1007/978-3-642-16558-0_29</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rs2c3paoqbek7f5ji7kxk4hdom">fatcat:rs2c3paoqbek7f5ji7kxk4hdom</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170829053454/https://www.bioontology.org/sites/default/files/a%20linked%20data%20approach.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/21/5b/215b63ec84ebca41e47944498eaaf61e7ef0eeea.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-16558-0_29"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Using a suite of ontologies for preserving workflow-centric research objects

Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina Hettne, Raul Palma, Eleni Mina, Oscar Corcho, José Manuel Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole Goble
<span title="">2015</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/etvhqodrjrc3tpf4c7eo6waru4" style="color: black;">Journal of Web Semantics</a> </i> &nbsp;
Scientific workflows are a popular mechanism for specifying and automating data-driven in silico experiments. A significant aspect of their value lies in their potential to be reused.  ...  To gain an understanding of the workflow, and how it may be used and repurposed for their needs, scientists require access to additional resources such as annotations describing the workflow, datasets  ...  The research reported in this paper was supported by the Wf4ever project (EU FP7 STREP 270192) and the myGrid platform for e-Biology (award EP/G026238/1).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.websem.2015.01.003">doi:10.1016/j.websem.2015.01.003</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rno4fynyprbkdje3g2c7o5g3c4">fatcat:rno4fynyprbkdje3g2c7o5g3c4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210715012306/https://www.research.manchester.ac.uk/portal/files/49491296/POST-PEER-REVIEW-PUBLISHERS.PDF" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f9/64/f96448ddd2b7edd85c43c7b6e7338507c344a41f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.websem.2015.01.003"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Using a Suite of Ontologies for Preserving Workflow-Centric Research Objects

Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina Hettne, Raul Palma, Eleni Mina, Oscar Corcho, Jose Manuel Gomez-Perez, Sean Bechhofer, Graham Klyne, Carole Goble
<span title="">2015</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tol7woxlqjeg5bmzadeg6qrg3e" style="color: black;">Social Science Research Network</a> </i> &nbsp;
Scientific workflows are a popular mechanism for specifying and automating data-driven in silico experiments. A significant aspect of their value lies in their potential to be reused.  ...  To gain an understanding of the workflow, and how it may be used and repurposed for their needs, scientists require access to additional resources such as annotations describing the workflow, datasets  ...  The research reported in this paper was supported by the Wf4ever project (EU FP7 STREP 270192) and the myGrid platform for e-Biology (award EP/G026238/1).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2139/ssrn.3199184">doi:10.2139/ssrn.3199184</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bpf4aoexync7nbv3uqjq7oi7n4">fatcat:bpf4aoexync7nbv3uqjq7oi7n4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200306064743/https://openaccess.leidenuniv.nl/bitstream/handle/1887/78857/1-s2.0-S1570826815000049-main.pdf?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/66/44/6644c782dc04fe2d975f2cf868bbac88d8ebb4e4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2139/ssrn.3199184"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ssrn.com </button> </a>

Towards FAIR protocols and workflows: The OpenPREDICT case study [article]

Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
<span title="2019-11-20">2019</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
It is essential for the advancement of science that scientists and researchers share, reuse and reproduce workflows and protocols used by others.  ...  In this paper we describe our inclusive and overarching approach to apply the FAIR principles to workflows and protocols and demonstrate its benefits.  ...  These questions are then used for the functional validation of the semantic model(s) through SPARQL queries that retrieve the data necessary to answer each question.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1911.09531v1">arXiv:1911.09531v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/73agzpgoinaxbl6bjnrqmkalmm">fatcat:73agzpgoinaxbl6bjnrqmkalmm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200922153737/https://arxiv.org/pdf/1911.09531v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/37/97/37974019723ac45a0cd69eb299135c4bf18e57fa.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1911.09531v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Towards Automated 3D Reconstruction of Defective Cultural Heritage Objects [article]

Robert Gregor, Ivan Sipiran, Georgios Papaioannou, Tobias Schreck, Anthousis Andreadis, Pavlos Mavridis
<span title="">2014</span> <i title="The Eurographics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/uczo3l2axvgcphnx4f45rikliy" style="color: black;">Eurographics Workshop on Graphics and Cultural Heritage</a> </i> &nbsp;
It also includes the similarity-based retrieval of appropriate complementary object data which is used to repair local and global object defects.  ...  types of physical defects that are encountered in CH artifacts by proposing a flexible repair workflow for 3D digitizations of CH objects.  ...  This work was supported by the European Commission in context of the FP7 STREP Project PRESIOUS, grant no. 600533 § § .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2312/gch.20141311">doi:10.2312/gch.20141311</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/36hpmipqlzb2rjnoeuvoep7mam">fatcat:36hpmipqlzb2rjnoeuvoep7mam</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200113085446/https://diglib.eg.org/xmlui/bitstream/handle/10.2312/gch.20141311.135-144/135-144.pdf;jsessionid=0B28682BC50AB21C7D5EC5E7B5AF3A74?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b9/f9/b9f96141770a7dc8d7b3be21c34de2dc912cb619.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2312/gch.20141311"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Case-Based Support for Collaborative Business [chapter]

Ralph Bergmann, Andrea Freßmann, Kerstin Maximini, Rainer Maximini, Thomas Sauer
<span title="">2006</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
Adaptive workflows and collaboration patterns selected by a CBR process are introduced for explicitly describing collaboration among agents.  ...  In order to guide the technical design of the architecture, a systematic analysis of the requirements for collaboration support has been performed in various application domains.  ...  reuse of old business processes, a key feature for adaptive workflows and late-modelling.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/11805816_38">doi:10.1007/11805816_38</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gau2f7u5hnazhfsczpd2d7tq54">fatcat:gau2f7u5hnazhfsczpd2d7tq54</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20070723110203/https://www.wi2.uni-trier.de/publications/2006_ECCBR_bergmann.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/59/c2/59c2adcfa7b0ee47d91f46b0022b115ffc4b4b4a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/11805816_38"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Face Image Retrieval of Efficient Sparse Code words and Multiple Attribute in Binning Image

Suchitra S
<span title="2017-08-17">2017</span> <i title="FapUNIFESP (SciELO)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/26kd6oqjfbep7n4kgxjqtmryji" style="color: black;">Brazilian Archives of Biology and Technology</a> </i> &nbsp;
In this paper, we propose a novel LOP and sparse codewords method to provide similar matching results with respect to input query image.  ...  In photography, face recognition and face retrieval play an important role in many applications such as security, criminology and image forensics.  ...  Image based search involve an input query image and retrieval of similar image to the input image from database.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1590/1678-4324-2017160480">doi:10.1590/1678-4324-2017160480</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/s3kqazz4sva2lo6ce2drf6aigq">fatcat:s3kqazz4sva2lo6ce2drf6aigq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20181030064820/http://www.scielo.br/pdf/babt/v60/1516-8913-babt-60-e17160480.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c6/14/c614450c9b1d89d5fda23a54dbf6a27a4b821ac0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1590/1678-4324-2017160480"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> scielo.br </button> </a>

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study

Eleni Mina, Mark Thompson, Rajaram Kaliyaperumal, Jun Zhao, Eelke van der Horst, Zuotian Tatum, Kristina M Hettne, Erik A Schultes, Barend Mons, Marco Roos
<span title="">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/iasjcyzzyncgnohh3aitx65bhq" style="color: black;">Journal of Biomedical Semantics</a> </i> &nbsp;
Here, we use the nanopublication model to make scientific assertions that were concluded from a workflow analysis of Huntington's Disease data machine-readable, interoperable, and citable.  ...  We followed the nanopublication guidelines to semantically model our assertions as well as their provenance metadata and authorship.  ...  Acknowledgements The work presented in this paper is supported by grants received from the Netherlands Bioinformatics Centre (  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/2041-1480-6-5">doi:10.1186/2041-1480-6-5</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26464783">pmid:26464783</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4603842/">pmcid:PMC4603842</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ness72giubdffb4tmaw2cx65qa">fatcat:ness72giubdffb4tmaw2cx65qa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170813041303/https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/2041-1480-6-5?site=jbiomedsem.biomedcentral.com" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9b/22/9b22b8a527aba232fffa14326740fbaf56f9c0cc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/2041-1480-6-5"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603842" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The Use of Open Data to Improve the Repeatability of Adaptivity and Personalisation Experiment

Harshvardhan J. Pandit, Roghaiyeh Gachpaz Hamed, Séamus Lawless, Dave Lewis
<span title="2019-06-12">2019</span> <i title="Zenodo"> Zenodo </i> &nbsp;
and easily located, accessed and reused to repeat an experiment.  ...  Reproducibility of results is a key element for the verification of scientific experiments and an important indicator of the quality of a published experiment.  ...  Acknowledgements This work has been supported partially by the European Commission as part of the FALCON project (contact number 610879) and the ADAPT Centre for Digital Content Technology which is funded  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3244366">doi:10.5281/zenodo.3244366</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ehqgsigclzda3d5474ej5347oq">fatcat:ehqgsigclzda3d5474ej5347oq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201224183216/https://zenodo.org/record/3244366/files/paper.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/91/d1/91d16dadb170cc91feeeb52a65d4b24ef9680d87.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3244366"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

WOODSS and the Web

C. B. Medeiros, J. Perez-Alcazar, L. Digiampietri, G. Z. Pastorello, A. Santanche, R. S. Torres, E. Madeira, E. Bacarin
<span title="2005-09-01">2005</span> <i title="Association for Computing Machinery (ACM)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/svqjiw2cwzftpcod3duuxcbveu" style="color: black;">SIGMOD record</a> </i> &nbsp;
for reuse; and taking advantage of planning in Artificial Intelligence to support composition mechanisms.  ...  In both contexts, workflows are annotated and stored in a database.  ...  This work was partially financed by CNPq, CAPES, FAPESP and UNIFACS, CNPq WebMaps and AgroFlow projects, and a Microsoft eScience grant.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/1084805.1084810">doi:10.1145/1084805.1084810</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wev24qalhfchnofrpdmmaf6q4u">fatcat:wev24qalhfchnofrpdmmaf6q4u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170813015354/http://sigmodrecord.org/publications/sigmodRecord/0509/p18-special-sw-section-3.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f9/6a/f96a78b11b3521b4de1a4c2dd7a0ffd949c9087e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/1084805.1084810"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>

The Evolution of myExperiment

David De Roure, Carole Goble, Sergejs Aleksejevs, Sean Bechhofer, Jiten Bhagat, Don Cruickshank, Paul Fisher, Nandkumar Kollara, Danius Michaelides, Paolo Missier, David Newman, Marcus Ramsden (+4 others)
<span title="">2010</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/j26tcszq2jfsppxyetteuxy2fq" style="color: black;">2010 IEEE Sixth International Conference on e-Science</a> </i> &nbsp;
The myExperiment social website for sharing scientific workflows, designed according to Web 2.0 principles, has grown to be the largest public repository of its kind.  ...  It is distinctive for its focus on sharing methods, its researcher-centric design and its facility to aggregate content into sharable 'research objects'.  ...  for helping provide the use cases.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/escience.2010.59">doi:10.1109/escience.2010.59</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/eScience/RoureGABBCFKMMNRRWZZ10.html">dblp:conf/eScience/RoureGABBCFKMMNRRWZZ10</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pb4v5uclhzcxpdwquvplmta2a4">fatcat:pb4v5uclhzcxpdwquvplmta2a4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151129093822/http://eprints.soton.ac.uk/271458/3/myExpIEEEcamera.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e6/00/e600fd494c73d6f7d29dc82e79eb274219c06489.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/escience.2010.59"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

The Digital Earth as knowledge engine

Krzysztof Janowicz, Pascal Hitzler
<span title="">2012</span> <i title="IOS Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/pcapks3huberdozbvfqowysuly" style="color: black;">Semantic Web Journal</a> </i> &nbsp;
We propose to redefine the Digital Earth as a knowledge engine and discuss what the Semantic Web has to offer in this context and to Big Data in general.  ...  For instance, studying disease dynamics for prediction and policy making requires data and models from a diverse body of science ranging from medical science and epidemiology over geography and economics  ...  Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3233/sw-2012-0070">doi:10.3233/sw-2012-0070</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/aktahpqvwrbo5bfv2566vparm4">fatcat:aktahpqvwrbo5bfv2566vparm4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160326083736/http://geog.ucsb.edu/~jano/Semantics_Digital_Earth2012.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6d/21/6d21c31a8018b046357b2a50927b5e2c17ce1817.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3233/sw-2012-0070"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Structuring research methods and data with the research object model: genomics workflows as a case study

Kristina M Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julian Garrido, David de Roure (+7 others)
<span title="">2014</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/iasjcyzzyncgnohh3aitx65bhq" style="color: black;">Journal of Biomedical Semantics</a> </i> &nbsp;
We applied this model to a case study where we analysed human metabolite variation by workflows.  ...  Our assumption is that offering means of digital, structured aggregation and annotation of the objects of an experiment will provide necessary meta-data for a scientist to understand and recreate the results  ...  We gratefully acknowledge Matt Gamble for his advice on the Minim model.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/2041-1480-5-41">doi:10.1186/2041-1480-5-41</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25276335">pmid:25276335</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4177597/">pmcid:PMC4177597</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ejlb76ytordqvh57q4ho6xtev4">fatcat:ejlb76ytordqvh57q4ho6xtev4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922060515/https://www.escholar.manchester.ac.uk/api/datastream?publicationPid=uk-ac-man-scw:234050&amp;datastreamId=POST-PEER-REVIEW-PUBLISHERS.PDF" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/36/bf/36bf9b05f11ec1e548de9633ff25df520acf6afb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/2041-1480-5-41"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177597" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Towards FAIR protocols and workflows: the OpenPREDICT use case

Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
<span title="2020-09-21">2020</span> <i title="PeerJ Inc."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/zs2czkfyybggbpvr26rbyxpsjy" style="color: black;">PeerJ Computer Science</a> </i> &nbsp;
It is essential for the advancement of science that researchers share, reuse and reproduce each other's workflows and protocols.  ...  In this paper we describe a two-fold approach of simultaneously applying the FAIR principles to scientific workflows as well as the involved data.  ...  For the disease aspect, two disease-disease similarities were calculated based on medical description of diseases and semantic similarity of disease terms in the Human Phenotype Ontology.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7717/peerj-cs.281">doi:10.7717/peerj-cs.281</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33816932">pmid:33816932</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7924452/">pmcid:PMC7924452</a> <a target="_blank" rel="external noopener" href="https://doaj.org/article/e3339c7f439d4843822785f5308945c9">doaj:e3339c7f439d4843822785f5308945c9</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pxn7sw7mfreevex4thf3pnus4a">fatcat:pxn7sw7mfreevex4thf3pnus4a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200921084210/https://peerj.com/articles/cs-281.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/73/3e/733ea4b6186eeec8a06c9448a1956dbc5d92a3e4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7717/peerj-cs.281"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7924452" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The Use of Open Data to Improve the Repeatability of Adaptivity and Personalisation Experiment

Harshvardhan J. Pandit, Roghaiyeh Gachpaz Hamed, Séamus Lawless, Dave Lewis
<span title="2019-06-12">2019</span> <i title="Zenodo"> Zenodo </i> &nbsp;
and easily located, accessed and reused to repeat an experiment.  ...  Reproducibility of results is a key element for the verification of scientific experiments and an important indicator of the quality of a published experiment.  ...  Acknowledgements This work has been supported partially by the European Commission as part of the FAL-CON project (contact number 610879) and the ADAPT Centre for Digital Content Technology which is funded  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3245325">doi:10.5281/zenodo.3245325</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qzretjxzojccbmdsqdymdagnke">fatcat:qzretjxzojccbmdsqdymdagnke</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200226214619/https://zenodo.org/record/3245325/files/preprint.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/47/9f/479fe243f497b84c791b9769174cb5b5830771b1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3245325"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>
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