Filters








58 Hits in 14.5 sec

Quantitative validation of a nonlinear histology-MRI coregistration method using generalized Q-sampling imaging in complex human cortical white matter

Mihika Gangolli, Laurena Holleran, Joong Hee Kim, Thor D. Stein, Victor Alvarez, Ann C. McKee, David L. Brody
<span title="">2017</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
When validated in ex vivo human cortical tissue at a 250 × 250 × 500 micron spatial resolution, the method proved robust in correlations between generalized q-sampling imaging and histologically based  ...  We present a nonlinear voxel based two dimensional coregistration method that is useful for matching diffusion signals to quantitative metrics of high resolution histological images.  ...  The studies presented in this work were carried out, in part, using Small-Animal MR Facility of the Mallinckrodt Institute of Radiology, Washington University.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2017.03.059">doi:10.1016/j.neuroimage.2017.03.059</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28365421">pmid:28365421</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5497585/">pmcid:PMC5497585</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xnadceu5x5a7dcass5f6k6i2ke">fatcat:xnadceu5x5a7dcass5f6k6i2ke</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200208165533/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5497585&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bc/de/bcde878d7e44156907393a92cd99191c387d2e87.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2017.03.059"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5497585" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Rationale, design and methodology of the image analysis protocol for studies of patients with cerebral small vessel disease and mild stroke

Maria del C. Valdés Hernández, Paul A. Armitage, Michael J. Thrippleton, Francesca Chappell, Elaine Sandeman, Susana Muñoz Maniega, Kirsten Shuler, Joanna M. Wardlaw
<span title="2015-11-26">2015</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/owm2oeqfm5cgbavtkvxfakwj6y" style="color: black;">Brain and Behavior</a> </i> &nbsp;
Its manifestations on magnetic resonance imaging (MRI) include white matter hyperintensities, lacunes, microbleeds, perivascular spaces, small subcortical infarcts, and brain atrophy.  ...  spaces, microbleeds, macrohemorrhages, iron deposition in basal ganglia, substantia nigra and brain stem, brain atrophy, and white matter hyperintensities, with the latter separated into intense and less  ...  A. Dickie, and S. Wiseman, for providing data for Table 3 , L. Viksne, K. Hoban, and A. K. Heye for their contribution in generating the final ROIs template, X. Wang and M.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/brb3.415">doi:10.1002/brb3.415</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26807340">pmid:26807340</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4714639/">pmcid:PMC4714639</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ccdjxjulljct5a5x2jgxvgha6y">fatcat:ccdjxjulljct5a5x2jgxvgha6y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190501011632/https://www.pure.ed.ac.uk/ws/files/23390647/Hern_ndez_et_al_2015_Brain_and_Behavior.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dd/84/dd84fb3bc3227275b920d5c25d167ddc118f529b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/brb3.415"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> wiley.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714639" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Tractography-Pathology Correlations in Traumatic Brain Injury: A TRACK-TBI Study [article]

Amber L Nolan, Cathrine Petersen, Diego Iacono, Christine L Mac Donald, Pratik Mukherjee, Andre van der Kouwe, Sonia Jain, Allison Stevens, Bram Ryder Diamond, Ruopeng Wang, Amy J Markowitz, Bruce Fischl (+6 others)
<span title="2020-07-22">2020</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
a lack of high-resolution imaging with histopathological validation.  ...  We developed an ex vivo MRI protocol to analyze tract terminations at 750 micron resolution, followed by histopathologic evaluation of white matter pathology, and applied these methods to a 60-year-old  ...  To ensure the robustness of these results, a sensitivity analysis was performed using the leave-one-out cross validation (LOOCV) method.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.07.20.209668">doi:10.1101/2020.07.20.209668</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/m45aaqrllfbdhbqfmkajskglba">fatcat:m45aaqrllfbdhbqfmkajskglba</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201108065432/https://www.biorxiv.org/content/biorxiv/early/2020/07/22/2020.07.20.209668.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4c/ad/4cad6878031c6eac960cf57d251b7b689a11dd40.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.07.20.209668"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Diffusion Tensor Imaging-Based Studies at the Group-Level Applied to Animal Models of Neurodegenerative Diseases

Hans-Peter Müller, Francesco Roselli, Volker Rasche, Jan Kassubek
<span title="2020-08-31">2020</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wrk3kouosrhcxiprcbguskdipu" style="color: black;">Frontiers in Neuroscience</a> </i> &nbsp;
The understanding of human and non-human microstructural brain alterations in the course of neurodegenerative diseases has substantially improved by the non-invasive magnetic resonance imaging (MRI) technique  ...  This overview with a systematic review focuses on the principles of DTI analysis as used in studies at the group level in living preclinical models of neurodegeneration.  ...  ACKNOWLEDGMENTS We would like to thank the Ulm University Center for Translational Imaging MoMAN for its support.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2020.00734">doi:10.3389/fnins.2020.00734</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32982659">pmid:32982659</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7487414/">pmcid:PMC7487414</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fwb2izfuybfarfdkp4bqqfspum">fatcat:fwb2izfuybfarfdkp4bqqfspum</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200901161129/https://fjfsdata01prod.blob.core.windows.net/articles/files/549062/pubmed-zip/.versions/1/.package-entries/fnins-14-00734/fnins-14-00734.pdf?sv=2015-12-11&amp;sr=b&amp;sig=nTiqmYP11uwkOUd6itEMxXOjzQW4VPlareAYbqZnKzU%3D&amp;se=2020-09-01T16%3A11%3A59Z&amp;sp=r&amp;rscd=attachment%3B%20filename%2A%3DUTF-8%27%27fnins-14-00734.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ba/22/ba228a1b8ecf8305b6f80d80192ade8fa48add3a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2020.00734"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487414" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Spatio-Temporal Patterns of Demyelination and Remyelination in the Cuprizone Mouse Model

Ian Tagge, Audrey O'Connor, Priya Chaudhary, Jim Pollaro, Yosef Berlow, Megan Chalupsky, Dennis Bourdette, Randy Woltjer, Mac Johnson, William Rooney, Martin Stangel
<span title="2016-04-07">2016</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
Cuprizone administration in mice provides a reproducible model of demyelination and spontaneous remyelination, and has been useful in understanding important aspects of human disease, including multiple  ...  T 2 -weighted MRI gray/white matter contrast was strong at baseline, weak after 6 weeks of cuprizone treatment, and returned to a limited extent after recovery.  ...  Acknowledgments Evan Calkins, Danielle Galipeau, and David Clark provided excellent technical support in histological processing.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0152480">doi:10.1371/journal.pone.0152480</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27054832">pmid:27054832</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4824475/">pmcid:PMC4824475</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/x42a5cd4jrd25g5zmcv54o7zlm">fatcat:x42a5cd4jrd25g5zmcv54o7zlm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171011175408/http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0152480&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ff/3b/ff3bf3e7eb313e1db60432ba208294050c97f680.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0152480"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824475" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

In vivo super-resolution track-density imaging for thalamic nuclei identification [article]

Gianpaolo Antonio Basile, Salvatore Bertino, Alessia Bramanti, Giuseppe Pio Anastasi, Demetrio Milardi, Alberto Cacciola
<span title="2021-01-04">2021</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
The development of novel techniques for the in vivo, non-invasive visualization and identification of thalamic nuclei has represented a major challenge for human neuroimaging research in the last decades  ...  The present work aimed at describing a novel protocol for histologically-guided delineation of thalamic nuclei based on short-tracks track-density imaging (stTDI), which is an advanced imaging technique  ...  While many of these methods claim high similarity to histological atlases (i.e Morel atlas), such similarity has been sparsely tested in a quantitative fashion. In addition, the .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.01.03.425122">doi:10.1101/2021.01.03.425122</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/73v5nybxyra4rh35lbisgbjqqq">fatcat:73v5nybxyra4rh35lbisgbjqqq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210429041111/https://www.biorxiv.org/content/biorxiv/early/2021/01/04/2021.01.03.425122.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/96/d5/96d5961e2e1962f86c1abe0347cd2f27a201d92a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.01.03.425122"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Pathomechanisms of HIV-Associated Cerebral Small Vessel Disease: A Comprehensive Clinical and Neuroimaging Protocol and Analysis Pipeline

Kyle D Murray, Meera V Singh, Yuchuan Zhuang, Md Nasir Uddin, Xing Qiu, Miriam T Weber, Madalina E Tivarus, Henry Z Wang, Bogachan Sahin, Jianhui Zhong, Sanjay B Maggirwar, Giovanni Schifitto
<span title="2020-12-15">2020</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4kchoxo3jrfubkck3y7nfncina" style="color: black;">Frontiers in Neurology</a> </i> &nbsp;
MRI imaging follows the recommended clinical small vessel imaging standards and adds several advanced sequences to obtain quantitative assessments of brain tissues including white matter microstructure  ...  This approach, although implemented in HIV infected individuals, can be used in the general population to assess cerebrovascular health.  ...  ACKNOWLEDGMENTS We would like to acknowledge the contributions of additional team members to the efforts of this study, including study coordination, statistical support, image processing assistance, and  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fneur.2020.595463">doi:10.3389/fneur.2020.595463</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33384655">pmid:33384655</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7769815/">pmcid:PMC7769815</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mdxpzurd7zazbbq77x5zbhadxu">fatcat:mdxpzurd7zazbbq77x5zbhadxu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210106144648/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC7769815&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/01/2c/012c64a4b84ddce83211f94911793ebe1fe72a15.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fneur.2020.595463"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7769815" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Asymmetry, connectivity, and segmentation of the arcuate fascicle in the human brain

Juan C. Fernández-Miranda, Yibao Wang, Sudhir Pathak, Lucia Stefaneau, Timothy Verstynen, Fang-Cheng Yeh
<span title="2014-03-17">2014</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/h7z73zcffbg2jo4rudbgl6nvfu" style="color: black;">Brain Structure and Function</a> </i> &nbsp;
We employed diffusion spectrum imaging reconstructed by generalized q-sampling and we applied both a subject-specific approach (10 subjects) and a template approach (q-space diffeomorphic reconstruction  ...  We complemented our imaging investigation with fiber microdissection of five post-mortem human brains. Our results confirmed the highly leftward asymmetry of the arcuate fascicle.  ...  The Copeland Fund of The Pittsburgh Foundation. Brain Struct Funct  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00429-014-0751-7">doi:10.1007/s00429-014-0751-7</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24633827">pmid:24633827</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/udeq724vr5aohixy6kcu6r4dfy">fatcat:udeq724vr5aohixy6kcu6r4dfy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160718021124/http://www.psy.cmu.edu:80/~coaxlab/documents/Fernandez-Miranda_etal_2014.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/73/9f/739f904f9cd13da74a672798387a87b0f472fc87.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00429-014-0751-7"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Mean microvessel segment length and radius after embolic stroke: Comparison of magnetic resonance imaging (MRI) and laser scanning confocal microscopy (LSCM)

Asamoah Bosomtwi, Michael Chopp, Li Zhang, Zheng Gang Zhang, Mei Lu, Quan Jiang
<span title="">2011</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/f3h3spd2ynhnlmmnezj3hhhoqm" style="color: black;">Brain Research</a> </i> &nbsp;
Our data suggest that a) morphological changes in the microvasculature can be measured noninvasively using MRI, and b) both MRI and LSCM give comparable information about both of these important parameters  ...  On MRI taken at 6 weeks, MRI of the recovery region revealed a significant increase in mean vessel size index (VSI) (5.75 ± 0.54 vs 4.81 ± 0.39 μm; p < 0.001) and decrease in mean segment length (MSL)  ...  Acknowledgments This work was supported in part by NIH grants RO1 NS48349, P50 NS23393, PO1 NS42345, and Yerkes National Primate center base grant P51 RR000165 and Guerbet Company (France) for providing  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.brainres.2011.01.009">doi:10.1016/j.brainres.2011.01.009</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21237138">pmid:21237138</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3056053/">pmcid:PMC3056053</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2hjhqmpdv5fb3jwfi53tnfjsoi">fatcat:2hjhqmpdv5fb3jwfi53tnfjsoi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191129013448/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3056053&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4b/23/4b23e7c6af31d52da26f1a5a01cff420416c2130.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.brainres.2011.01.009"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3056053" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Quantification of Brain Maturation and Growth Patterns in C57BL/6J Mice via Computational Neuroanatomy of Diffusion Tensor Images

S. Baloch, R. Verma, H. Huang, P. Khurd, S. Clark, P. Yarowsky, T. Abel, S. Mori, C. Davatzikos
<span title="2008-07-24">2008</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eeg67t2wzfd3dpiicxsttg3cxi" style="color: black;">Cerebral Cortex</a> </i> &nbsp;
Diffusion Tensor magnetic resonance imaging and computational neuroanatomy are used to quantify postnatal developmental patterns of C57BL/6J mouse brain.  ...  Anisotropy drops rapidly within a week, indicating that the underlying brain tissue becomes more isotropic in orientation, possibly due to formation of a complex randomly intertwined web of dendrites.  ...  Because MRI cannot yet provide the level of detail that is achievable in histology, it is generally viewed as a tool that can complement histology and help form more focused hypotheses to be investigated  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/cercor/bhn112">doi:10.1093/cercor/bhn112</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18653668">pmid:18653668</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3140198/">pmcid:PMC3140198</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2fpg2oeqpnaddlfwna77jbk6ku">fatcat:2fpg2oeqpnaddlfwna77jbk6ku</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170829142441/https://www.cbica.upenn.edu/sbia/papers/486.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/99/ab/99ab0ad0620eda7270b26f0dda5acec1c4fd460b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/cercor/bhn112"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3140198" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Modeling & Analysis

<span title="">2003</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
The anatomical images were segmented into grey matter (GM), white matter (WM) and cerebrospinal fluid (CSF) using SPM99.  ...  In this study, a warped MRI-constructed brain template is used to localize cortical sites underlying (digitized) scalp points in subjects not having MR head images.  ...  Images were normalized and segmented into gray and white matter and CSF [4].  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s1053-8119(05)70006-9">doi:10.1016/s1053-8119(05)70006-9</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zff2suxcofbxvetfrwfwcxi3zm">fatcat:zff2suxcofbxvetfrwfwcxi3zm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170706082412/http://www.math.fsu.edu/%7Emhurdal/presentations/hbm/hbm03/hbm03_neuroimage_abstracts.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s1053-8119(05)70006-9"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Diffusion tensor imaging and beyond

Jacques-Donald Tournier, Susumu Mori, Alexander Leemans
<span title="2011-04-05">2011</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/34p2n5u2vjfgrf7j2rmkmfhogu" style="color: black;">Magnetic Resonance in Medicine</a> </i> &nbsp;
Parallel imaging and segmented k-space sampling are two widely used such methods.  ...  With parallel imaging capability now standard on modern magnetic resonance imaging (MRI) scanners, most DWI studies currently use parallel imaging as part of a routine protocol.  ...  algorithms used, and the shear complexity of white matter itself.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/mrm.22924">doi:10.1002/mrm.22924</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21469191">pmid:21469191</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3366862/">pmcid:PMC3366862</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vvyodydokfhyhntenpctq34rxq">fatcat:vvyodydokfhyhntenpctq34rxq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170812024530/http://www.exploredti.com/ref/Review_MRM.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/75/b5/75b52be473aaef6d5c30c7ecb737d3789405bfbc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/mrm.22924"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3366862" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Mass Spectrometry Imaging: A Review of Emerging Advancements and Future Insights

Amanda Rae Buchberger, Kellen DeLaney, Jillian Johnson, Lingjun Li
<span title="2017-12-13">2017</span> <i title="American Chemical Society (ACS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nx5fizmox5he5k23oobehznqna" style="color: black;">Analytical Chemistry</a> </i> &nbsp;
Mass spectrometry imaging (MSI) is a powerful tool that enables untargeted investigations into the spatial distribution of molecular species in a variety of samples.  ...  The credibility of MSI experiments has further been enhanced by the development of methods for absolute quantitation of detected molecules.  ...  Acknowledgments The authors gratefully acknowledge support from the National Institutes of Health (NIH) through Grants  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1021/acs.analchem.7b04733">doi:10.1021/acs.analchem.7b04733</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29155564">pmid:29155564</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5959842/">pmcid:PMC5959842</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dmkh3snt2bdofofmees5fxnfku">fatcat:dmkh3snt2bdofofmees5fxnfku</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200429024213/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5959842&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b2/d2/b2d2e2a4e8f8d1b04728dc8042a718b406bd3cf2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1021/acs.analchem.7b04733"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acs.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5959842" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Lead-DBS v2: Towards a comprehensive pipeline for deep brain stimulation imaging

Andreas Horn, Ningfei Li, Till A. Dembek, Ari Kappel, Chadwick Boulay, Siobhan Ewert, Anna Tietze, Andreas Husch, Thushara Perera, Wolf-Julian Neumann, Marco Reisert, Hang Si (+7 others)
<span title="2018-09-01">2018</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
Here we demonstrate the updated DBS and connectome pipelines of Lead-DBS using a single patient example with state-of-the-art high-field imaging as well as a retrospective cohort of patients scanned in  ...  The rapid development and emergence of these methods in DBS data analysis require us to revisit and revise the pipelines introduced in the original methods publication.  ...  TMH has received research support from the American Brain Foundation / American Academy of Neurology and NINDS grant K23NS099380.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2018.08.068">doi:10.1016/j.neuroimage.2018.08.068</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30179717">pmid:30179717</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6286150/">pmcid:PMC6286150</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/k2ondvutxndjhfxactwqvoj5ka">fatcat:k2ondvutxndjhfxactwqvoj5ka</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200213214833/https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6286150&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ae/4c/ae4c0263e7cc661188c4a05a3ff21d1ae27e5c40.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2018.08.068"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6286150" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Shaping Brain Structure: Genetic and Phylogenetic Axes of Macro Scale Organization of Cortical Thickness [article]

Sofie Louise Valk, Ting Xu, Daniel S. Margulies, Shahrzad Kahrabian Masouleh, Casey Paquola, Alexandros Goulas, Peter Kochunov, Jonathan Smallwood, B.T. Thomas Yeo, Boris C. Bernhardt, Simon B Eickhoff
<span title="2020-02-10">2020</span> <i title="Cold Spring Harbor Laboratory"> biorxiv/medrxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We found that both axes showed a high degree of correspondence in pairs of identical twins, suggesting a strong heritable component in humans.  ...  In a large-scale sample of twins (n=899) we found structural covariance of thickness to be organized along both an anterior-to-posterior and inferior-to-superior axes.  ...  In the following, we used diffusion mapping, a nonlinear dimensionality reduction method (29) . In brief, the algorithm estimates a low-dimensional embedding from a high-dimensional affinity matrix.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.02.10.939561">doi:10.1101/2020.02.10.939561</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lnilpyd7hngezluqgenl5r564q">fatcat:lnilpyd7hngezluqgenl5r564q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210718084707/https://hal.archives-ouvertes.fr/hal-03051915/document" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e2/67/e267b9acf4ab74fb33e6cb8dd3a0d83c54cff7cb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.02.10.939561"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>
&laquo; Previous Showing results 1 &mdash; 15 out of 58 results